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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0140200-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:1940077:1940676:-1 gene:Os12g0140200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0140200-00)
Sequence

ATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTTCCCTCCCATCGAG
AACTTGAGCTTCGAAGGCATCCCCCGTTATACTTTCAAGATTGGCAACCGGATCCACTGC
ACCAACTTGATGTACCGCCCAGGTAGTCGGACGCTATTAACGCAGGAAGAAGCTCATGAG
ATCATTCGCGAGCGCTTGAGGTCTGACATTCGTCGGGGCCGCATAGAACTGGACGCCGAC
TTCTTGCAGCAGCTTGTTGATCAGGTTCGCGATCATATTCTTCAGCGTCAGCGCCGTGGC
ACTGCCACTGCCATTGCCATGGATGGAGTAGTGGAGGTGGAGGATGCGTACAGGAACGGT
GGGTTCGGCGCTGTCCCCGCGTCGAGCAAGGCCATGGCCGAGCTGCAGGAGGCGATGGCA
AGCGACGCCAGGGAACGCGGGTGCGCTGTGTGCCTGGAGGATTTCGAGGCGGGAGAGAAG
CTGACGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTGGCTCCGC
CTCAGCCATCGCTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAG

Peptide Sequence

PEP ID

Os12t0140200-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:1940077:1940676:-1 gene:Os12g0140200 transcript:Os12t0140200-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0140200-00)
Sequence

MEVDASAVARALPRDFPPIENLSFEGIPRYTFKIGNRIHCTNLMYRPGSRTLLTQEEAHE
IIRERLRSDIRRGRIELDADFLQQLVDQVRDHILQRQRRGTATAIAMDGVVEVEDAYRNG
GFGAVPASSKAMAELQEAMASDARERGCAVCLEDFEAGEKLTRMPCSHCFHATCILDWLR
LSHRCPLCRFPMPTQDQSY

Transcript Sequence

Transcript ID

Os12t0140200-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:1940077:1940676:-1 gene:Os12g0140200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0140200-00)
Sequence

ATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTTCCCTCCCATCGAG
AACTTGAGCTTCGAAGGCATCCCCCGTTATACTTTCAAGATTGGCAACCGGATCCACTGC
ACCAACTTGATGTACCGCCCAGGTAGTCGGACGCTATTAACGCAGGAAGAAGCTCATGAG
ATCATTCGCGAGCGCTTGAGGTCTGACATTCGTCGGGGCCGCATAGAACTGGACGCCGAC
TTCTTGCAGCAGCTTGTTGATCAGGTTCGCGATCATATTCTTCAGCGTCAGCGCCGTGGC
ACTGCCACTGCCATTGCCATGGATGGAGTAGTGGAGGTGGAGGATGCGTACAGGAACGGT
GGGTTCGGCGCTGTCCCCGCGTCGAGCAAGGCCATGGCCGAGCTGCAGGAGGCGATGGCA
AGCGACGCCAGGGAACGCGGGTGCGCTGTGTGCCTGGAGGATTTCGAGGCGGGAGAGAAG
CTGACGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTGGCTCCGC
CTCAGCCATCGCTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAG