Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0138900-02
CDS Infomation	cds chromosome:IRGSP-1.0:12:1889124:1894864:1 gene:Os12g0138900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plastid isopropylmalate synthase (Fragment). (Os12t0138900-01);Similar to Plastid isopropylmalate synthase (Fragment). (Os12t0138900-02)
Sequence	ATGGCCTCCTCCCTCCTCTCCTCCCCAAAACCCTCCTCCTTCTCCTCCGCAAACCCCACC TCCACTCCACGCCCACGCGCCCAAACTCTCTCCCCCTTCCGCGCCGCCGCCCCACGCTTC TCCCATGGCCTCGCCACCGCCGCCGCCGCCGCAAACCCTAGCGCCTCCCGCCGCTGCTAC CACCGCGCCTTCGCCCGCCCCGTCCGGGCGTCCATGGCGCAGCCGCGGCGCCCGGAGTAC GTCCCCAACCGCATCGACGACCCCAACTACGTCCGCATCTTCGACACCACCCTCCGCGAC GGGGAGCAGTCCCCCGGGGCCACCATGACCAGCGCCGAGAAGCTCGTCGTCGCGCGCCAG CTCGCCCGCCTCGGCGTCGACATCATCGAGGCCGGGTTCCCGGCCTCCTCCCCCGACGAC CTCGACGCCGTGCGCTCCATCGCCATCGAGGTCGGGAACACGCCCGTCGGGGAGGACGGC CACGTGCCGGTCATCTGTGGCCTCTCGAGATGCAATAAGCGAGACATTGATGCTGCCTGG GAGGCCGTGCGGCACGCGCGGCGGCCGCGCATCCACACCTTCATTGCCACCAGCGAGATC CATATGCAGCACAAGCTAAGGAAGACGCCCGAGCAGGTGGTGGCCATTGCCAAGGAAATG GTGGCCTACGCCCGCAGCCTAGGCTGCCCTGATGTCGAGTTCAGCCCTGAAGACGCTGGC AGGTCAAACAGAGAGTTTCTATATCATATACTAGAGGAAGTCATAAAAGCTGGAGCAACA ACACTCAATATCCCAGACACTGTTGGATACACTCTTCCTTATGAATTTGGGAAACTAATT GCTGATATAAAAGCAAACACTCCAGGAATTGAAAATGCCATTATTTCTACTCATTGCCAG AATGACCTTGGTCTAGCAACCGCAAATACATTAGCGGGCGCTCATGCAGGAGCACGGCAA TTAGAGGTGACTATCAATGGTATTGGTGAAAGGGCTGGAAATGCTTCTTTGGAAGAGGTT GTGATGGCAATTAAATGTCGTCGAGAACTCTTAGGAGGTCTGTATACTGGAATCAATACC CAACATATCACTATGTCAAGCAAAATGGTACAAGAGCACAGTGGACTTCATGTACAACCA CATAAAGCTATTGTCGGTGCCAATGCCTTTGCACATGAAAGTGGAATTCATCAGGATGGG ATGCTTAAGTACAAAGGAACTTATGAAATAATTTCTCCTGATGATATTGGTCTAACACGT GCAAATGAGTTTGGTATTGTTCTTGGGAAGCTCAGTGGAAGGCATGCTGTGAGATCTAAA CTAGTGGAGCTTGGATATGAAATCACTGACAAGGAATTTGAGGATTTCTTTAAACGCTAC AAAGAGGTTGCAGAGAAGAAAAAGCGTGTAACTGATGAAGACATTGAGGCGCTGTTGTCT GATGAGATATTTCAGCCCAAGGTTTTTTGGTCCCTTGCTGATGTACAGGCAACTTGTGGA ACACTTGGTCTGTCTACAGCAACTGTCAAACTGATAGGTCCGGATGGAGATGAGAAGATT GCATGTGCAGTTGGAACAGGTCCAGTTGATGCAGCTTACAAGGCTGTTGATGATATAATA CAGATCCCAACTGTTCTTCGAGAATATAGCATGACATCGGTCACAGAAGGCATTGATGCA ATTGCAACTACTAGAGTGGTTGTCACTGGAGATGTCAGCGACTCTAAACATGCTTTGACT GGTCACTCCTTCAACCGGGCATTCAGTGGGAGTGGTGCCGCACTGGATATTGTTGTTTCC AGTGTGCGAGCTTACCTGAGTGCCCTGAACAAGATGTCCAGTTTTGTTGGGGCTATCAAG GCTAGTAGTGAAGTATCTGAAAGCCAAAGAGTTCAAACCACAGAATGA

Peptide Sequence

PEP ID	Os12t0138900-02
PEP Infomation	pep chromosome:IRGSP-1.0:12:1889124:1894864:1 gene:Os12g0138900 transcript:Os12t0138900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plastid isopropylmalate synthase (Fragment). (Os12t0138900-01);Similar to Plastid isopropylmalate synthase (Fragment). (Os12t0138900-02)
Sequence	MASSLLSSPKPSSFSSANPTSTPRPRAQTLSPFRAAAPRFSHGLATAAAAANPSASRRCY HRAFARPVRASMAQPRRPEYVPNRIDDPNYVRIFDTTLRDGEQSPGATMTSAEKLVVARQ LARLGVDIIEAGFPASSPDDLDAVRSIAIEVGNTPVGEDGHVPVICGLSRCNKRDIDAAW EAVRHARRPRIHTFIATSEIHMQHKLRKTPEQVVAIAKEMVAYARSLGCPDVEFSPEDAG RSNREFLYHILEEVIKAGATTLNIPDTVGYTLPYEFGKLIADIKANTPGIENAIISTHCQ NDLGLATANTLAGAHAGARQLEVTINGIGERAGNASLEEVVMAIKCRRELLGGLYTGINT QHITMSSKMVQEHSGLHVQPHKAIVGANAFAHESGIHQDGMLKYKGTYEIISPDDIGLTR ANEFGIVLGKLSGRHAVRSKLVELGYEITDKEFEDFFKRYKEVAEKKKRVTDEDIEALLS DEIFQPKVFWSLADVQATCGTLGLSTATVKLIGPDGDEKIACAVGTGPVDAAYKAVDDII QIPTVLREYSMTSVTEGIDAIATTRVVVTGDVSDSKHALTGHSFNRAFSGSGAALDIVVS SVRAYLSALNKMSSFVGAIKASSEVSESQRVQTTE

Transcript Sequence

Transcript ID	Os12t0138900-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:1889124:1894864:1 gene:Os12g0138900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plastid isopropylmalate synthase (Fragment). (Os12t0138900-01);Similar to Plastid isopropylmalate synthase (Fragment). (Os12t0138900-02)
Sequence	CGCCACAAACCCCGGCGACCACCATGGCCTCCTCCCTCCTCTCCTCCCCAAAACCCTCCT CCTTCTCCTCCGCAAACCCCACCTCCACTCCACGCCCACGCGCCCAAACTCTCTCCCCCT TCCGCGCCGCCGCCCCACGCTTCTCCCATGGCCTCGCCACCGCCGCCGCCGCCGCAAACC CTAGCGCCTCCCGCCGCTGCTACCACCGCGCCTTCGCCCGCCCCGTCCGGGCGTCCATGG CGCAGCCGCGGCGCCCGGAGTACGTCCCCAACCGCATCGACGACCCCAACTACGTCCGCA TCTTCGACACCACCCTCCGCGACGGGGAGCAGTCCCCCGGGGCCACCATGACCAGCGCCG AGAAGCTCGTCGTCGCGCGCCAGCTCGCCCGCCTCGGCGTCGACATCATCGAGGCCGGGT TCCCGGCCTCCTCCCCCGACGACCTCGACGCCGTGCGCTCCATCGCCATCGAGGTCGGGA ACACGCCCGTCGGGGAGGACGGCCACGTGCCGGTCATCTGTGGCCTCTCGAGATGCAATA AGCGAGACATTGATGCTGCCTGGGAGGCCGTGCGGCACGCGCGGCGGCCGCGCATCCACA CCTTCATTGCCACCAGCGAGATCCATATGCAGCACAAGCTAAGGAAGACGCCCGAGCAGG TGGTGGCCATTGCCAAGGAAATGGTGGCCTACGCCCGCAGCCTAGGCTGCCCTGATGTCG AGTTCAGCCCTGAAGACGCTGGCAGGTCAAACAGAGAGTTTCTATATCATATACTAGAGG AAGTCATAAAAGCTGGAGCAACAACACTCAATATCCCAGACACTGTTGGATACACTCTTC CTTATGAATTTGGGAAACTAATTGCTGATATAAAAGCAAACACTCCAGGAATTGAAAATG CCATTATTTCTACTCATTGCCAGAATGACCTTGGTCTAGCAACCGCAAATACATTAGCGG GCGCTCATGCAGGAGCACGGCAATTAGAGGTGACTATCAATGGTATTGGTGAAAGGGCTG GAAATGCTTCTTTGGAAGAGGTTGTGATGGCAATTAAATGTCGTCGAGAACTCTTAGGAG GTCTGTATACTGGAATCAATACCCAACATATCACTATGTCAAGCAAAATGGTACAAGAGC ACAGTGGACTTCATGTACAACCACATAAAGCTATTGTCGGTGCCAATGCCTTTGCACATG AAAGTGGAATTCATCAGGATGGGATGCTTAAGTACAAAGGAACTTATGAAATAATTTCTC CTGATGATATTGGTCTAACACGTGCAAATGAGTTTGGTATTGTTCTTGGGAAGCTCAGTG GAAGGCATGCTGTGAGATCTAAACTAGTGGAGCTTGGATATGAAATCACTGACAAGGAAT TTGAGGATTTCTTTAAACGCTACAAAGAGGTTGCAGAGAAGAAAAAGCGTGTAACTGATG AAGACATTGAGGCGCTGTTGTCTGATGAGATATTTCAGCCCAAGGTTTTTTGGTCCCTTG CTGATGTACAGGCAACTTGTGGAACACTTGGTCTGTCTACAGCAACTGTCAAACTGATAG GTCCGGATGGAGATGAGAAGATTGCATGTGCAGTTGGAACAGGTCCAGTTGATGCAGCTT ACAAGGCTGTTGATGATATAATACAGATCCCAACTGTTCTTCGAGAATATAGCATGACAT CGGTCACAGAAGGCATTGATGCAATTGCAACTACTAGAGTGGTTGTCACTGGAGATGTCA GCGACTCTAAACATGCTTTGACTGGTCACTCCTTCAACCGGGCATTCAGTGGGAGTGGTG CCGCACTGGATATTGTTGTTTCCAGTGTGCGAGCTTACCTGAGTGCCCTGAACAAGATGT CCAGTTTTGTTGGGGCTATCAAGGCTAGTAGTGAAGTATCTGAAAGCCAAAGAGTTCAAA CCACAGAATGAGTCTTGACGCTCCTTGGTTTTCATATCGGATGGTTCTATGTTTCACATT CCCAGCAAGGAGTATGTGCTTGTTGAAACATGGTTTTTCCGTTTAGTGCATCTGGAGGAT GTTCTGGGTTTCTTTGGTGGAGCCTGACTTAAGGTTGAACATCCAGGAAGTTTTGGGGTA TGTAGTGTATAATTCATATTTGAAAATTGTATTTCCAATAAGACAATAATAAATAATTGT TTGACATATGAGTATTGCAAAACTATTACTGTAAGAAATTAATCGTGAGACC