Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0138500-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:1870710:1872237:1 gene:Os12g0138500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ankyrin-repeat protein. (Os12t0138500-01)
Sequence

GGTTTCTTGGAGATCCAACCCGGGAAGCAACTGGAGAGCATGGTGAAGGAGGCGTCGGTG
GACGACGTGATGAAGGTGCTGATGGCGTCGCGCAAGTTCGAGATGCAGGAGCTGTGGGCG
ACTTGCTCCCACCTCGTCGCGCGCTCCGGCCTCTCCGCCGATCTCCTCGCCAAGCACCTC
CCCATCGATGTGGTGGCCAAGATCGAGGAGATCCGCGCCAAGTCGCCGCTCGCCGCGGCG
GCCGCGCCGCGCTCGCCGTTCCTGACGCACCACTACCTCCCCATGAACCCGGCGTCCTCC
GCGGCGGACCGCGACAACAAGATCCGGCGCATGCGGCGCGCCCTCGACGCCGCCGACATC
GAGCTCGTCAAGCTGATGGTCATGGGCGAGGGCCTGGACCTCGACGACGCGCTCGCCGTG
CACTACGCCGTGCAGCACTGCAACCGCGACGTCGTCAAGGCGCTGCTCGAGCTCGGCGCC
GCCGACGTCAACTCCCGCGCCGGCCCGACAGGCAAAACCGCCCTGCACCTTGCGGCGGAG
ATGGTCTCCCCGGACATGGTGTCCGTGCTCCTCGACCACCACGCCGACCCGAACTCCAGG
ACGCTCGACGGCGTCACGCCGCTCGACGTGCTCCGCAGCCTCACCTCCGAGTTCCTCTTC
AAGGGCGCCGTGCCGGGGCTGACGCACATCGAGCCCAACAAGCTCAGGCTCTGCCTCGAG
CTCGTGCAGTCGGCGGTGATGGTGACCACGCGCGACGACGGTGCGCCTGTCACCGGAGGC
GAGGCCGGCGGAAGCGACGGCGGCAACTTCCCGCGGAGCGACGCCGACGACAGCTTGGTG
AGCCTGACGATGAACTCGACGCTAATGTACCAGGGCCAGGAAATGGCGGCGGCCGTGGCC
GCCGGCGAGGGGAGGAAAAGCAACAACGGCCGAGGGAGCCCGCCGCCCGCCATGTACTTC
CCCAATGGCTTCGCATAA

Peptide Sequence

PEP ID

Os12t0138500-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:1870710:1872237:1 gene:Os12g0138500 transcript:Os12t0138500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ankyrin-repeat protein. (Os12t0138500-01)
Sequence

GFLEIQPGKQLESMVKEASVDDVMKVLMASRKFEMQELWATCSHLVARSGLSADLLAKHL
PIDVVAKIEEIRAKSPLAAAAAPRSPFLTHHYLPMNPASSAADRDNKIRRMRRALDAADI
ELVKLMVMGEGLDLDDALAVHYAVQHCNRDVVKALLELGAADVNSRAGPTGKTALHLAAE
MVSPDMVSVLLDHHADPNSRTLDGVTPLDVLRSLTSEFLFKGAVPGLTHIEPNKLRLCLE
LVQSAVMVTTRDDGAPVTGGEAGGSDGGNFPRSDADDSLVSLTMNSTLMYQGQEMAAAVA
AGEGRKSNNGRGSPPPAMYFPNGFA

Transcript Sequence

Transcript ID

Os12t0138500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:1870710:1872237:1 gene:Os12g0138500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ankyrin-repeat protein. (Os12t0138500-01)
Sequence

GCTTCTGTCATCACTTGTCATGGAGCTTCTGACTCATCTTTACTAGGAAGGGTCTTTTCA
AGCCCTTGTTGTGTCTGTCCCTTCCTTACATCACATCCATCCCCATGCTTGCTTTCCTGA
TTTCTTAATTCGCATCATTTCGGCATTTCCATTGCTAGGGTTTCTTGGAGATCCAACCCG
GGAAGCAACTGGAGAGCATGGTGAAGGAGGCGTCGGTGGACGACGTGATGAAGGTGCTGA
TGGCGTCGCGCAAGTTCGAGATGCAGGAGCTGTGGGCGACTTGCTCCCACCTCGTCGCGC
GCTCCGGCCTCTCCGCCGATCTCCTCGCCAAGCACCTCCCCATCGATGTGGTGGCCAAGA
TCGAGGAGATCCGCGCCAAGTCGCCGCTCGCCGCGGCGGCCGCGCCGCGCTCGCCGTTCC
TGACGCACCACTACCTCCCCATGAACCCGGCGTCCTCCGCGGCGGACCGCGACAACAAGA
TCCGGCGCATGCGGCGCGCCCTCGACGCCGCCGACATCGAGCTCGTCAAGCTGATGGTCA
TGGGCGAGGGCCTGGACCTCGACGACGCGCTCGCCGTGCACTACGCCGTGCAGCACTGCA
ACCGCGACGTCGTCAAGGCGCTGCTCGAGCTCGGCGCCGCCGACGTCAACTCCCGCGCCG
GCCCGACAGGCAAAACCGCCCTGCACCTTGCGGCGGAGATGGTCTCCCCGGACATGGTGT
CCGTGCTCCTCGACCACCACGCCGACCCGAACTCCAGGACGCTCGACGGCGTCACGCCGC
TCGACGTGCTCCGCAGCCTCACCTCCGAGTTCCTCTTCAAGGGCGCCGTGCCGGGGCTGA
CGCACATCGAGCCCAACAAGCTCAGGCTCTGCCTCGAGCTCGTGCAGTCGGCGGTGATGG
TGACCACGCGCGACGACGGTGCGCCTGTCACCGGAGGCGAGGCCGGCGGAAGCGACGGCG
GCAACTTCCCGCGGAGCGACGCCGACGACAGCTTGGTGAGCCTGACGATGAACTCGACGC
TAATGTACCAGGGCCAGGAAATGGCGGCGGCCGTGGCCGCCGGCGAGGGGAGGAAAAGCA
ACAACGGCCGAGGGAGCCCGCCGCCCGCCATGTACTTCCCCAATGGCTTCGCATAAGTAA
TATTATTCCCTATCCTTCTCTTCTACTAGCCGTGTTGAGATTTGTGGGGTTATGCATGGT
TGACAAGATGAGCAGCAAATGGTGTAGCTAGCTACTATATAGCTAGGATAAATGGGCAAC
AATTTAGTGGT