Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0136900-00
CDS Infomation	cds chromosome:IRGSP-1.0:12:1783558:1789565:1 gene:Os12g0136900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CA2+-ATPASE 5 description:Similar to Calcium-transporting ATPase 4, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4). (Os12t0136900-00)
Sequence	ATGGAGAAGCTGGACAGGTACCTGCAGGAGAACTTCGATGTGCCGGCCAAGAACCCGTCC GAGGAGGCGCAGCGGCGATGGCGGCAAGCCGTCGGCACCATCGTCAAGAATCGCCGCCGC CGCTTCCGCTGGGTGCCCGACCTCGAGCGCCGCTCCTTGGACAAGGCCAAGGTCCGCTCC ACCCAGGAAAAGATTCGGGTTGCCCTCTATGTGCAACAGGCTGCACTCATTTTTAGTGAT GGTGCCAAAAAGAAAGAATACAAACTAACAGGGGATATTATTAAAGCTGGATATGCCATC AATCCAGATGAGCTAGCATTGATCACAAGCAAGCATGATTCAAAAGCTTTAAAGATGCAT GGTGGGGTAGATGGGATATCTATAAAAGTTCGTTCATCATTTGATCATGGCATATATGCT AGTGAGTTAGATACAAGACAAAACATATATGGCGTCAACCGTTATGCAGAAAAGCCTTCA AGAAGTTTCTGGATGTTTGTTTGGGATGCATTGCAGGACATGACCCTTATAATTCTTATG GTATGTGCATTGCTATCTGTTGCAGTTGGTTTGGCAACAGAAGGTTGGCCAAAGGGCATG TATGATGGCTTGGGTATAATACTCAGCATTTTCTTAGTTGTTATGGTTACTGCTGTTAGT GATTATAAGCAGTCACTTCAGTTTAAGGAGCTAGACAATGAAAAGAAAAAGATATTTATC CATGTAACCAGAGATGGGCGTCGACAAAAGATCTCTATATATGACTTGGTAGTTGGTGAT ATAGTTCATCTGTCAATTGGAGATCAAGTACCTGCTGATGGACTGTATATACATGGGTAC TCCCTTTTGATTGATGAGTCCAGCTTATCTGGTGAGAGTGACCCAGTGTATGTTTCTCAA GACAAACCATTCATCTTGGCAGGAACTAAAGTGCAAGATGGATCTGCTAAGATGATAGTA ACTGCTGTCGGTATGCGCACTGAATGGGGAAAATTGATGAGCACATTGAGTGAGGGAGGA GAGGATGAGACACCACTGCAGGTTAAGCTAAATGGAGTTGCGACCATTATAGGAAAGATT GGACTGGTATTTGCCATATTAACATTTTTAGTTCTGCTGGTTAGATTTCTCATTGACAAA GGCATGACGGTTGGTTTGCTCAAATGGTATTCTACTGATGCATTGACTATAGTAAACTAC TTTGCAACAGCAGTAACCATTATAGTTGTTGCTGTACCTGAAGGATTGCCCTTGGCTGTT ACTTTGAGTCTTGCATTTGCAATGAAAAAGTTAATGAATGATAAAGCACTTGTTAGACAT CTTTCAGCGTGTGAAACAATGGGATCTGCTGGTACCATCTGCACGGACAAAACAGGAACT TTGACTACTAACCATATGGTTGTTGACAAAATATGGATATCTGAGGTTTCAAAGTCAGTT ACCAGTAACACCATTTCAGGAGAACTTAATTCTGTGGTTTCTTCTAGCACATTGAGTCTG CTTTTGCAGGGAATTTTTGAGAATACTAGCGCTGAGGTGGTCAAGGAAAAGGATGGCAAG CAAACTGTCTTAGGAACTCCAACAGAAAGAGCAATATTAGAATTTGGCTTGGGCTTGAAA GGAGATCATGATGCTGAGTATAGGGCCTGCACCAAGGTTAAGGTTGAGCCTTTCAATTCA GTCAAGAAGAAGATGGCAGTGCTGATTTCATTACCCAATGGCACGTCCAGATGGTTTTGC AAAGGTGCATCAGAAATTATTTTGCAGATGTGCGACATGATGGTTGATGGCGATGGAAAT GCTATTCCCTTATCGGAAGCTCAGAGAAAGAACATCTTAGATACTATCAACTCATTTGCT TCAGACGCTTTAAGGACGCTGTGCCTGGCATATAAGGAAGTGGATGATGATATTGATGAC AATGCAGATAGTCCAACAAGTGGTTTTACTCTAATAGCCATTTTCGGTATCAAGGATCCT GTGCGCCCTGGAGTTAAGGATGCTGTTAAGACCTGTATGTCTGCTGGTATCACAGTAAGA ATGGTAACTGGTGATAATATAAATACAGCTAAAGCTATAGCTAAAGAGTGTGGAATATTG ACTGAAGATGGTGTAGCAATAGAAGGACCAGAATTCCATAGCAAGAGCACAGAAGAGATG AGGGACCTGATACTAAATATTCAGGTCATGGCCCGTTCTTTACCATTGGATAAGCATACA CTCGTGACAAACTTGCGAGGTATGTTTGATGAGGTGGTTTCTGTGACAGGTGATGGTACA AATGATGCTCCTGCATTACACGAAGCAGATATTGGGCTTGCTATGGGCATTGCAGGAACA GAGGTTGCCAAGGAGAGTGCAGATGTCATAGTACTTGACGATAATTTCACAACTATAATA AATGTTGCAAGATGGGGTCGTGCAGTTTATATTAACATCCAAAAGTTTGTGCAGTTTCAG TTGACTGTCAATATTGTTGCTTTAGTCATCAATTTTGTCTCAGCATGCATCATAGGGAGC GCTCCTCTCACTGCTGTGCAGCTGTTGTGGGTTAATATGATCATGGATACATTGGGAGCT TTAGCACTAGCAACAGAGCCTCCAAATGATGAAATGATGAAGAGGCCACCTGTCCGAAAA GGGGAAAGTTTCATTACCAAGTTCATGTGGAGAAATATCATGGGGCAAAGTTTATATCAG CTATTTGTACTTGGAGCTCTCATGTTTGGTGGGGAAAGGCTTCTGAACATCAAGGGTGCA GATTCCAAATCCATCATAAATACACTGATATTCAACTCCTTCGTGTTTTGTCAGGTATTC AATGAAATAAACAGCAGAGAAATGCAGAAGATCAATGTTTTCCGTGGCATCATCAGCAAT TGGATCTTCATTGCAGTCATAGCAGCAACCGTAGCATTTCAAGTGGTGATCATAGAGTTT CTTGGCACTTTCGCCAGTACTGTTCCACTCAACTGGCAACATTGGCTGCTCAGCGTCGGC CTTGGCTCCATCAGTCTGATTGTTGGTGTCATCTTGAAGTGTATACCAGTTGGTTCAGGT GAAACCTCTGCAACTCCAAATGGATACAGGCCACTTGCCAATGGCCCTGATGACATATAG

Peptide Sequence

PEP ID	Os12t0136900-00
PEP Infomation	pep chromosome:IRGSP-1.0:12:1783558:1789565:1 gene:Os12g0136900 transcript:Os12t0136900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CA2+-ATPASE 5 description:Similar to Calcium-transporting ATPase 4, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4). (Os12t0136900-00)
Sequence	MEKLDRYLQENFDVPAKNPSEEAQRRWRQAVGTIVKNRRRRFRWVPDLERRSLDKAKVRS TQEKIRVALYVQQAALIFSDGAKKKEYKLTGDIIKAGYAINPDELALITSKHDSKALKMH GGVDGISIKVRSSFDHGIYASELDTRQNIYGVNRYAEKPSRSFWMFVWDALQDMTLIILM VCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVSDYKQSLQFKELDNEKKKIFI HVTRDGRRQKISIYDLVVGDIVHLSIGDQVPADGLYIHGYSLLIDESSLSGESDPVYVSQ DKPFILAGTKVQDGSAKMIVTAVGMRTEWGKLMSTLSEGGEDETPLQVKLNGVATIIGKI GLVFAILTFLVLLVRFLIDKGMTVGLLKWYSTDALTIVNYFATAVTIIVVAVPEGLPLAV TLSLAFAMKKLMNDKALVRHLSACETMGSAGTICTDKTGTLTTNHMVVDKIWISEVSKSV TSNTISGELNSVVSSSTLSLLLQGIFENTSAEVVKEKDGKQTVLGTPTERAILEFGLGLK GDHDAEYRACTKVKVEPFNSVKKKMAVLISLPNGTSRWFCKGASEIILQMCDMMVDGDGN AIPLSEAQRKNILDTINSFASDALRTLCLAYKEVDDDIDDNADSPTSGFTLIAIFGIKDP VRPGVKDAVKTCMSAGITVRMVTGDNINTAKAIAKECGILTEDGVAIEGPEFHSKSTEEM RDLILNIQVMARSLPLDKHTLVTNLRGMFDEVVSVTGDGTNDAPALHEADIGLAMGIAGT EVAKESADVIVLDDNFTTIINVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACIIGS APLTAVQLLWVNMIMDTLGALALATEPPNDEMMKRPPVRKGESFITKFMWRNIMGQSLYQ LFVLGALMFGGERLLNIKGADSKSIINTLIFNSFVFCQVFNEINSREMQKINVFRGIISN WIFIAVIAATVAFQVVIIEFLGTFASTVPLNWQHWLLSVGLGSISLIVGVILKCIPVGSG ETSATPNGYRPLANGPDDI

Transcript Sequence

Transcript ID	Os12t0136900-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:1783558:1789565:1 gene:Os12g0136900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CA2+-ATPASE 5 description:Similar to Calcium-transporting ATPase 4, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4). (Os12t0136900-00)
Sequence	ACCGGCCGCGGCCGGAGATGGAGAAGCTGGACAGGTACCTGCAGGAGAACTTCGATGTGC CGGCCAAGAACCCGTCCGAGGAGGCGCAGCGGCGATGGCGGCAAGCCGTCGGCACCATCG TCAAGAATCGCCGCCGCCGCTTCCGCTGGGTGCCCGACCTCGAGCGCCGCTCCTTGGACA AGGCCAAGGTCCGCTCCACCCAGGAAAAGATTCGGGTTGCCCTCTATGTGCAACAGGCTG CACTCATTTTTAGTGATGGTGCCAAAAAGAAAGAATACAAACTAACAGGGGATATTATTA AAGCTGGATATGCCATCAATCCAGATGAGCTAGCATTGATCACAAGCAAGCATGATTCAA AAGCTTTAAAGATGCATGGTGGGGTAGATGGGATATCTATAAAAGTTCGTTCATCATTTG ATCATGGCATATATGCTAGTGAGTTAGATACAAGACAAAACATATATGGCGTCAACCGTT ATGCAGAAAAGCCTTCAAGAAGTTTCTGGATGTTTGTTTGGGATGCATTGCAGGACATGA CCCTTATAATTCTTATGGTATGTGCATTGCTATCTGTTGCAGTTGGTTTGGCAACAGAAG GTTGGCCAAAGGGCATGTATGATGGCTTGGGTATAATACTCAGCATTTTCTTAGTTGTTA TGGTTACTGCTGTTAGTGATTATAAGCAGTCACTTCAGTTTAAGGAGCTAGACAATGAAA AGAAAAAGATATTTATCCATGTAACCAGAGATGGGCGTCGACAAAAGATCTCTATATATG ACTTGGTAGTTGGTGATATAGTTCATCTGTCAATTGGAGATCAAGTACCTGCTGATGGAC TGTATATACATGGGTACTCCCTTTTGATTGATGAGTCCAGCTTATCTGGTGAGAGTGACC CAGTGTATGTTTCTCAAGACAAACCATTCATCTTGGCAGGAACTAAAGTGCAAGATGGAT CTGCTAAGATGATAGTAACTGCTGTCGGTATGCGCACTGAATGGGGAAAATTGATGAGCA CATTGAGTGAGGGAGGAGAGGATGAGACACCACTGCAGGTTAAGCTAAATGGAGTTGCGA CCATTATAGGAAAGATTGGACTGGTATTTGCCATATTAACATTTTTAGTTCTGCTGGTTA GATTTCTCATTGACAAAGGCATGACGGTTGGTTTGCTCAAATGGTATTCTACTGATGCAT TGACTATAGTAAACTACTTTGCAACAGCAGTAACCATTATAGTTGTTGCTGTACCTGAAG GATTGCCCTTGGCTGTTACTTTGAGTCTTGCATTTGCAATGAAAAAGTTAATGAATGATA AAGCACTTGTTAGACATCTTTCAGCGTGTGAAACAATGGGATCTGCTGGTACCATCTGCA CGGACAAAACAGGAACTTTGACTACTAACCATATGGTTGTTGACAAAATATGGATATCTG AGGTTTCAAAGTCAGTTACCAGTAACACCATTTCAGGAGAACTTAATTCTGTGGTTTCTT CTAGCACATTGAGTCTGCTTTTGCAGGGAATTTTTGAGAATACTAGCGCTGAGGTGGTCA AGGAAAAGGATGGCAAGCAAACTGTCTTAGGAACTCCAACAGAAAGAGCAATATTAGAAT TTGGCTTGGGCTTGAAAGGAGATCATGATGCTGAGTATAGGGCCTGCACCAAGGTTAAGG TTGAGCCTTTCAATTCAGTCAAGAAGAAGATGGCAGTGCTGATTTCATTACCCAATGGCA CGTCCAGATGGTTTTGCAAAGGTGCATCAGAAATTATTTTGCAGATGTGCGACATGATGG TTGATGGCGATGGAAATGCTATTCCCTTATCGGAAGCTCAGAGAAAGAACATCTTAGATA CTATCAACTCATTTGCTTCAGACGCTTTAAGGACGCTGTGCCTGGCATATAAGGAAGTGG ATGATGATATTGATGACAATGCAGATAGTCCAACAAGTGGTTTTACTCTAATAGCCATTT TCGGTATCAAGGATCCTGTGCGCCCTGGAGTTAAGGATGCTGTTAAGACCTGTATGTCTG CTGGTATCACAGTAAGAATGGTAACTGGTGATAATATAAATACAGCTAAAGCTATAGCTA AAGAGTGTGGAATATTGACTGAAGATGGTGTAGCAATAGAAGGACCAGAATTCCATAGCA AGAGCACAGAAGAGATGAGGGACCTGATACTAAATATTCAGGTCATGGCCCGTTCTTTAC CATTGGATAAGCATACACTCGTGACAAACTTGCGAGGTATGTTTGATGAGGTGGTTTCTG TGACAGGTGATGGTACAAATGATGCTCCTGCATTACACGAAGCAGATATTGGGCTTGCTA TGGGCATTGCAGGAACAGAGGTTGCCAAGGAGAGTGCAGATGTCATAGTACTTGACGATA ATTTCACAACTATAATAAATGTTGCAAGATGGGGTCGTGCAGTTTATATTAACATCCAAA AGTTTGTGCAGTTTCAGTTGACTGTCAATATTGTTGCTTTAGTCATCAATTTTGTCTCAG CATGCATCATAGGGAGCGCTCCTCTCACTGCTGTGCAGCTGTTGTGGGTTAATATGATCA TGGATACATTGGGAGCTTTAGCACTAGCAACAGAGCCTCCAAATGATGAAATGATGAAGA GGCCACCTGTCCGAAAAGGGGAAAGTTTCATTACCAAGTTCATGTGGAGAAATATCATGG GGCAAAGTTTATATCAGCTATTTGTACTTGGAGCTCTCATGTTTGGTGGGGAAAGGCTTC TGAACATCAAGGGTGCAGATTCCAAATCCATCATAAATACACTGATATTCAACTCCTTCG TGTTTTGTCAGGTATTCAATGAAATAAACAGCAGAGAAATGCAGAAGATCAATGTTTTCC GTGGCATCATCAGCAATTGGATCTTCATTGCAGTCATAGCAGCAACCGTAGCATTTCAAG TGGTGATCATAGAGTTTCTTGGCACTTTCGCCAGTACTGTTCCACTCAACTGGCAACATT GGCTGCTCAGCGTCGGCCTTGGCTCCATCAGTCTGATTGTTGGTGTCATCTTGAAGTGTA TACCAGTTGGTTCAGGTGAAACCTCTGCAACTCCAAATGGATACAGGCCACTTGCCAATG GCCCTGATGACATATAG