Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0134000-02
CDS Infomation	cds chromosome:IRGSP-1.0:12:1673082:1675149:1 gene:Os12g0134000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Hydroxymethylglutaryl-CoA lyase. (Os12t0134000-01);Similar to hydroxymethylglutaryl-CoA lyase. (Os12t0134000-02)
Sequence	GTAAAGATTGAACTGATACACAAATTGGTGGCTTCTGGTCTATCAGTAGTTGAAGCCACA AGTTTTGTGTCCCCAAAATGGGTGCCACAGCTAGCAGATGCAAAGGATGTGGTTGAAGGG ATTAAGCATGTGCCAGATGTGCGGTTTCCAGTGTTAACTCCTAACCTCAGAGGATTTGAG GCTGCTGTTGCAGCTGGTGCAAAAGAAGTTGCAGTTTTCGCATCTGCCTCTGAATCCTTT TCTAAGTCAAACCTTAATTGTACCATCAAGGAAAGCCTTGTTCGGTACCATGATGTTGTA ACTTCTGCCAAGAAACATGGAATACGAATCCGTGGGTATGTTTCATGTGTGGTTGGTTGC CCTGTTGAAGGCACAATTCATCCATCAAAGGTAGCATATGTAGCTAAGGAGCTTTATGAC ATGGGTTGCTCGGAGATCTCACTCGGAGACACGATTGGTGTTGGTACACCAGGTAGCGTA CTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGATCGCCGTCCATTTC CATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAACTGGGGATCAAC ATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGC AATGTCGCGACGGAGGACGTTGTGTACATGCTCCATGGACTGGGGATAGAGACCAATGTT GACCTCAACAAGCTCATGGATGCTGGAGATTACATCTCCAAGCATCTGGGAAGGCAGTCA GGCTCCAAGACCACCACTGCTCTCCGCAAGCTAACCACTTAA

Peptide Sequence

PEP ID	Os12t0134000-02
PEP Infomation	pep chromosome:IRGSP-1.0:12:1673082:1675149:1 gene:Os12g0134000 transcript:Os12t0134000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Hydroxymethylglutaryl-CoA lyase. (Os12t0134000-01);Similar to hydroxymethylglutaryl-CoA lyase. (Os12t0134000-02)
Sequence	VKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVVEGIKHVPDVRFPVLTPNLRGFE AAVAAGAKEVAVFASASESFSKSNLNCTIKESLVRYHDVVTSAKKHGIRIRGYVSCVVGC PVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSVLAMLEAVMSFVPVDKIAVHF HDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNV DLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT

Transcript Sequence

Transcript ID	Os12t0134000-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:1673082:1675149:1 gene:Os12g0134000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Hydroxymethylglutaryl-CoA lyase. (Os12t0134000-01);Similar to hydroxymethylglutaryl-CoA lyase. (Os12t0134000-02)
Sequence	GTAAAGATTGAACTGATACACAAATTGGTGGCTTCTGGTCTATCAGTAGTTGAAGCCACA AGTTTTGTGTCCCCAAAATGGGTGCCACAGCTAGCAGATGCAAAGGATGTGGTTGAAGGG ATTAAGCATGTGCCAGATGTGCGGTTTCCAGTGTTAACTCCTAACCTCAGAGGATTTGAG GCTGCTGTTGCAGCTGGTGCAAAAGAAGTTGCAGTTTTCGCATCTGCCTCTGAATCCTTT TCTAAGTCAAACCTTAATTGTACCATCAAGGAAAGCCTTGTTCGGTACCATGATGTTGTA ACTTCTGCCAAGAAACATGGAATACGAATCCGTGGGTATGTTTCATGTGTGGTTGGTTGC CCTGTTGAAGGCACAATTCATCCATCAAAGGTAGCATATGTAGCTAAGGAGCTTTATGAC ATGGGTTGCTCGGAGATCTCACTCGGAGACACGATTGGTGTTGGTACACCAGGTAGCGTA CTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGATCGCCGTCCATTTC CATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAACTGGGGATCAAC ATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGC AATGTCGCGACGGAGGACGTTGTGTACATGCTCCATGGACTGGGGATAGAGACCAATGTT GACCTCAACAAGCTCATGGATGCTGGAGATTACATCTCCAAGCATCTGGGAAGGCAGTCA GGCTCCAAGACCACCACTGCTCTCCGCAAGCTAACCACTTAAGTCCCTGATGATCATAAT AGGGATTCAGAAAAGAAGTCCGAAGATACATCGGTTGGCGTCAGTTTAATGTTTTTACAC AAGTCATATGTGATTGTAACCTGTAAACCGTCTCAATTTAGTCCCAATATGGGTGAAAGT AAACAGAAACCATATATGTATAGACACATTTGTGTTTAAGTTCTTGGATTGAATAATCAA TGCCCTTCATAC