Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0133500-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:1648260:1650685:1 gene:Os12g0133500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALCIUM-DEPENDENT PROTEIN KINASE 26 description:Similar to Calcium-dependent protein kinase (Fragment). (Os12t0133500-00)
Sequence

ATGGGCCAGTGCTGCACGGGTGGCGGGAAGGCCGTCGCCGGCGACGAGGCAGAGCCAGGG
ACCTCCAAGGCGGCGCCGCCGAGCCGCGGCACCTCCTCCAAAAATGGGTCCGCCAAGCAG
CAGCCGTGCTCGCCGGCGGCCAAGGCGGCGGCGACGGAAGCGGCGGCGGCGGCGTCGTCG
TCCAAGAAGCCGGCAGGCCCCATCGGCGAGGTGCTGGAGCGGCCGATGGAGGAGGTTCGC
ACGACGTACTCCATCGGCAAGGAGCTCGGGCGCGGGCAGTTCGGCGTGACCCACCTGTGC
ACCCACAAGGCCACCGGCGAGAAGCTGGCGTGCAAGACGATCGCGAAGCGGAAGCTGGCG
AACAAGGAGGACGTCGACGACGTCCGCCGCGAGGTGCAGATCATGCACCACCTCTCTGGC
CAGCCCAACATCGTCGACCTCCGCGGCGCCTACGAGGACAAGCACAACGTCCACCTCGTG
ATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACCGCATCATCGCGCGTGGCCACTACACG
GAGCGCGCCGCGGCGGCGCTCCTCCGCGCCATCGTCGGGATCGTGCACACCTGCCACTCC
ATGGGGGTGATCCACCGGGACCTCAAGCCGGAGAACTTCCTGCTGCTGAGCAAAGGGGAC
GACGCGCCGCTCAAGGCCACCGACTTCGGCCTCTCCGTCTTCTTCAAGGAAGGCGAGGTG
TTCCGCGACATCGTCGGCAGCGCCTACTACATCGCGCCGGAGGTGCTCAAGAGGAAGTAC
GGCCCCGAGGCCGACATCTGGAGCATCGGCGTCATGCTCTACATCTTCCTCGCCGGCGTG
CCGCCCTTCTGGGCCGAGTCGGAGAACGCCATCTTCGCCGCCATCCTTCGCGGACAGATC
GACCTCGCCAGTGAGCCATGGCCGAAGATCTCCTCTGGAGCCAAGGACCTCGTCAGGAAG
ATGCTCAACATCAACCCCAAGGAGAGGCTTACAGCATTCCAAGTGCTCAATCACCCGTGG
ATCAAAGAAGATGGGGATGCTCCTGATGTACCACTTGACAATGTTGTTCTCAACAGGCTC
AAGCAGTTCAGGGCCATGAACCAGTTCAAGAAAGCTGCACTGAGGATTATAGCCGGATGC
CTGTCAGAGGAGGAGATCAAGGGGCTGAAGGAGATGTTCAAGAACATCGACAAGGACAAT
AGTGGGACCATTACGCTTGAGGAGCTCAAAAATGGGTTAGCAAAGCAGGGCACCAAGTTT
TCAGACAACGAAATTGAGCAACTTATGGAAGCAGCTGATGCTGATGGCAATGGAATTATC
GACTATGAGGAGTTCGTCACCGCGACGGTGCACATGAACAAAATGGATCGAGAAGAGCAC
CTTTACACGGCATTCCAGTACTTTGACAAGGATAATAGTGGGTACATCACAAAGGAAGAG
CTCGAGCAAGCCTTGAAGGAACAAGGGTTATACGACGCCAACGAGATCAAGGATGTCATC
ACAGATGCAGACTCTAATAATGATGGGAGGATAGATTATTCAGAGTTTGTGGCCATGATG
AGGAAAGGATCAGGCTGTGCAGAAGCAACAAACCCAAAGAAGAAGAGGCGAGATCTAGTT
CTATAG

Peptide Sequence

PEP ID

Os12t0133500-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:1648260:1650685:1 gene:Os12g0133500 transcript:Os12t0133500-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALCIUM-DEPENDENT PROTEIN KINASE 26 description:Similar to Calcium-dependent protein kinase (Fragment). (Os12t0133500-00)
Sequence

MGQCCTGGGKAVAGDEAEPGTSKAAPPSRGTSSKNGSAKQQPCSPAAKAAATEAAAAASS
SKKPAGPIGEVLERPMEEVRTTYSIGKELGRGQFGVTHLCTHKATGEKLACKTIAKRKLA
NKEDVDDVRREVQIMHHLSGQPNIVDLRGAYEDKHNVHLVMELCAGGELFDRIIARGHYT
ERAAAALLRAIVGIVHTCHSMGVIHRDLKPENFLLLSKGDDAPLKATDFGLSVFFKEGEV
FRDIVGSAYYIAPEVLKRKYGPEADIWSIGVMLYIFLAGVPPFWAESENAIFAAILRGQI
DLASEPWPKISSGAKDLVRKMLNINPKERLTAFQVLNHPWIKEDGDAPDVPLDNVVLNRL
KQFRAMNQFKKAALRIIAGCLSEEEIKGLKEMFKNIDKDNSGTITLEELKNGLAKQGTKF
SDNEIEQLMEAADADGNGIIDYEEFVTATVHMNKMDREEHLYTAFQYFDKDNSGYITKEE
LEQALKEQGLYDANEIKDVITDADSNNDGRIDYSEFVAMMRKGSGCAEATNPKKKRRDLV
L

Transcript Sequence

Transcript ID

Os12t0133500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:1648260:1650685:1 gene:Os12g0133500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALCIUM-DEPENDENT PROTEIN KINASE 26 description:Similar to Calcium-dependent protein kinase (Fragment). (Os12t0133500-00)
Sequence

CTCCGTCGCCGGAGCAGGCACGCGCGCATCCCCCGACGCCATGGGCCAGTGCTGCACGGG
TGGCGGGAAGGCCGTCGCCGGCGACGAGGCAGAGCCAGGGACCTCCAAGGCGGCGCCGCC
GAGCCGCGGCACCTCCTCCAAAAATGGGTCCGCCAAGCAGCAGCCGTGCTCGCCGGCGGC
CAAGGCGGCGGCGACGGAAGCGGCGGCGGCGGCGTCGTCGTCCAAGAAGCCGGCAGGCCC
CATCGGCGAGGTGCTGGAGCGGCCGATGGAGGAGGTTCGCACGACGTACTCCATCGGCAA
GGAGCTCGGGCGCGGGCAGTTCGGCGTGACCCACCTGTGCACCCACAAGGCCACCGGCGA
GAAGCTGGCGTGCAAGACGATCGCGAAGCGGAAGCTGGCGAACAAGGAGGACGTCGACGA
CGTCCGCCGCGAGGTGCAGATCATGCACCACCTCTCTGGCCAGCCCAACATCGTCGACCT
CCGCGGCGCCTACGAGGACAAGCACAACGTCCACCTCGTGATGGAGCTCTGCGCCGGCGG
CGAGCTCTTCGACCGCATCATCGCGCGTGGCCACTACACGGAGCGCGCCGCGGCGGCGCT
CCTCCGCGCCATCGTCGGGATCGTGCACACCTGCCACTCCATGGGGGTGATCCACCGGGA
CCTCAAGCCGGAGAACTTCCTGCTGCTGAGCAAAGGGGACGACGCGCCGCTCAAGGCCAC
CGACTTCGGCCTCTCCGTCTTCTTCAAGGAAGGCGAGGTGTTCCGCGACATCGTCGGCAG
CGCCTACTACATCGCGCCGGAGGTGCTCAAGAGGAAGTACGGCCCCGAGGCCGACATCTG
GAGCATCGGCGTCATGCTCTACATCTTCCTCGCCGGCGTGCCGCCCTTCTGGGCCGAGTC
GGAGAACGCCATCTTCGCCGCCATCCTTCGCGGACAGATCGACCTCGCCAGTGAGCCATG
GCCGAAGATCTCCTCTGGAGCCAAGGACCTCGTCAGGAAGATGCTCAACATCAACCCCAA
GGAGAGGCTTACAGCATTCCAAGTGCTCAATCACCCGTGGATCAAAGAAGATGGGGATGC
TCCTGATGTACCACTTGACAATGTTGTTCTCAACAGGCTCAAGCAGTTCAGGGCCATGAA
CCAGTTCAAGAAAGCTGCACTGAGGATTATAGCCGGATGCCTGTCAGAGGAGGAGATCAA
GGGGCTGAAGGAGATGTTCAAGAACATCGACAAGGACAATAGTGGGACCATTACGCTTGA
GGAGCTCAAAAATGGGTTAGCAAAGCAGGGCACCAAGTTTTCAGACAACGAAATTGAGCA
ACTTATGGAAGCAGCTGATGCTGATGGCAATGGAATTATCGACTATGAGGAGTTCGTCAC
CGCGACGGTGCACATGAACAAAATGGATCGAGAAGAGCACCTTTACACGGCATTCCAGTA
CTTTGACAAGGATAATAGTGGGTACATCACAAAGGAAGAGCTCGAGCAAGCCTTGAAGGA
ACAAGGGTTATACGACGCCAACGAGATCAAGGATGTCATCACAGATGCAGACTCTAATAA
TGATGGGAGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAGGATCAGGCTGTGC
AGAAGCAACAAACCCAAAGAAGAAGAGGCGAGATCTAGTTCTATAGCGAAACAGGGTAGT
GTGTATAGTGGCTGGTTTGTGCACAATTTCAAACATGATGTGCATTTACCACGAGTGTAA
TGTATACAATGGAATTTTCTTTCCAATTGCATATTTACATTTCAGGTTGGGCTCAGGTTC
ATGTTTGGTCTTGCACATTGTCCTGGCTAGTTGTTGGGAAGATGGATTTGTTCCTTCTTT
CTGTTCAGTCATCTTGTACACTACATGATTGAATCCTACCTGATTAGAAAGCCCAAAAGA
TTACTGGTACATTCAAC