Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0132300-02
CDS Infomation

cds chromosome:IRGSP-1.0:12:1559859:1561568:-1 gene:Os12g0132300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALMODULIN-LIKE PROTEIN 3 description:Similar to Calmodulin (CaM). (Os12t0132300-02)
Sequence

ATGGACCACCTGACAAAGGAGCAGATCGCCGAGTTCCGGGAGGCATTCAACCTGTTCGAC
AAAGATGGAGACGGGACGATCACGAGCAAGGAGCTTGGGACGGTGATGGGGTCGCTGGGG
CAGTCGCCGACGGAGGCGGAGCTGAAGAAGATGGTGGAGGAGGTGGACGCGGACGGCAGC
GGCAGCATCGAGTTCGAGGAGTTCCTGGGCCTCCTCGCCCGCAAGCTTCGCGACACCGGC
GCCGAGGACGACATCCGCGACGCCTTCCGCGTCTTCGACAAGGACCAGAACGGCTTCATC
ACCCCCGACGAGCTCCGCCACGTCATGGCCAACCTCAGCGACCCCCTCTCCGACGACGAG
CTCGCCGACATGCTCCACGAGGCCGACTCCGACGGCGACGGCCAGATCAACTACAACGAG
TTCCTCAAGGTCATGATGGCAAAGCGAAGGCAGAATATGATGGAGGGACATGGAAGTGGA
GGCCATCGGTCAAGTAACTCCCACAAGAAATCCGGCTGCTGCGGCCCGAATTCCTCATGT
ACCATCCTCTGA

Peptide Sequence

PEP ID

Os12t0132300-02
PEP Infomation

pep chromosome:IRGSP-1.0:12:1559859:1561568:-1 gene:Os12g0132300 transcript:Os12t0132300-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALMODULIN-LIKE PROTEIN 3 description:Similar to Calmodulin (CaM). (Os12t0132300-02)
Sequence

MDHLTKEQIAEFREAFNLFDKDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGS
GSIEFEEFLGLLARKLRDTGAEDDIRDAFRVFDKDQNGFITPDELRHVMANLSDPLSDDE
LADMLHEADSDGDGQINYNEFLKVMMAKRRQNMMEGHGSGGHRSSNSHKKSGCCGPNSSC
TIL

Transcript Sequence

Transcript ID

Os12t0132300-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:1559859:1561568:-1 gene:Os12g0132300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALMODULIN-LIKE PROTEIN 3 description:Similar to Calmodulin (CaM). (Os12t0132300-02)
Sequence

ATCGATCACGATCACTGCACTGCAAGCCTTCAACCTGGAGCAAGTGAGCCATGCCATATT
GGCATACGATACGCGAGCAAGTGCCCTCCTTTTTATAGCCAACAGCAAGAGCAAGGCAGA
TATTAGATAGAATGAAAGTTGGGGAATCAATCAGCGGCAGCTTAATCCTCTCGTCATCTC
CATCAATCCATCGTCATTAATCAGAGAATTTGCTTCTTGTGTTACTAATAATCTTTGAGG
GGAGGCAATTAATGGACCACCTGACAAAGGAGCAGATCGCCGAGTTCCGGGAGGCATTCA
ACCTGTTCGACAAAGATGGAGACGGGACGATCACGAGCAAGGAGCTTGGGACGGTGATGG
GGTCGCTGGGGCAGTCGCCGACGGAGGCGGAGCTGAAGAAGATGGTGGAGGAGGTGGACG
CGGACGGCAGCGGCAGCATCGAGTTCGAGGAGTTCCTGGGCCTCCTCGCCCGCAAGCTTC
GCGACACCGGCGCCGAGGACGACATCCGCGACGCCTTCCGCGTCTTCGACAAGGACCAGA
ACGGCTTCATCACCCCCGACGAGCTCCGCCACGTCATGGCCAACCTCAGCGACCCCCTCT
CCGACGACGAGCTCGCCGACATGCTCCACGAGGCCGACTCCGACGGCGACGGCCAGATCA
ACTACAACGAGTTCCTCAAGGTCATGATGGCAAAGCGAAGGCAGAATATGATGGAGGGAC
ATGGAAGTGGAGGCCATCGGTCAAGTAACTCCCACAAGAAATCCGGCTGCTGCGGCCCGA
ATTCCTCATGTACCATCCTCTGAAAAAGATGTAGGTTTCAGGTTTGCAACTGTTCTGATG
AGGATTGTATAGTTCAGAGTTTTTTTTTTGTCACCTCAATTTCTGGTTACACTTGTTCTG
GGGCTATGCAAACAAGAAAATCAAACAACTACACAGTGTAAATGAAAATGAATAATGCTG
GCCAATTAATATACTTGTTCCTCACAAGATTCTGATTTACATACAAAACTTGACACACAA
AACCCATTGAGTGATCAGCTTCACTTGAGCTATCACAAGGGTTCTCTGACAAATAAGAGC
AGCATTTACAACACTAGTGGAGACCAAACATAGTTTACAGGGCCACTCACATCTAATTAC
AGATGCAATGAACATGCTTTCTGCTTTTCCAGCCTCTAGAAATGGGAATGCTGATTCAAA
AGAATGGGATGCTAAAATAGTTCACCCATTCCTCCTCTCCCAAGTTACTCTAGGAAAGTT
GATTTTGAAGATCATCTGATTTCCAAACAACATCCTTTAAGGTTCTGGAGAGGTTCTTGT
AGAACTGCAACACATTACAAGTTTGAAGTGATTCAGTACAAGCCATTCAACCAAATGTTG
C