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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0130900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:1494588:1495560:-1 gene:Os12g0130900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0130900-01)
Sequence

GTTGGGCGGCGGCGGCGGTGGCTGATAGGGTGGTTGGAGGAGCGAGGCGATCCCGTCCAC
CTCGCCGCGCCATCCCTCGCTGCCGCCAAGCAGATCCATGCGCGGGCGCTCCGGGCCGGT
GTGCCCACCTCCCACCCGCTCCTCGCCAAGCACCTCCTCTTCCACCTCGCCGTCCTCCGC
GCGCCGCCGCTCCGCTACGCCGTGGCGGTACTCTCCCGCCTCCTCCCGCACGGGCCACTA
GACCCGTTCCCCCTCAACACCGTGCACCGCATCGCTGCGGGCTCGTTCCGCCCGTGCGTC
GCGCTCGAGCTCCACCGCCGCCGCCTCGCGCCGCCCGACACGCACACCTACCCGTCGCTG
CTCCAGGCTTGCTCGCGCCTCCTCGCGCTCCGCGAAGGGGAGTGCCTCCATACCGAGGCC
GCCAAGAACGGGTTCGTCCAAAACTCGCCCGTTCATCTCTACGGCGCGTGTGGCCTGTTC
GAGAGCGTGCACAAGGTGTTCGATGAAATGCCGGTGCATGGGCAGAACCTCGTCTCGTGG
AATTCGATGCTCAACAGCTTTGCGGCCAACGGGCGCCCTAACGAGGTTCTCACTGTCTTC
CGGGAGATGCTGGGCGTCAACTTTGCGCCAGATGGAGTCACCATAGTCAGTGTTCTAACC
GCTTGTGCAGAGATTGGGGCGCTTGCTCTTGGGAGGAGGGTTCATGTGTATGCGGAAAAG
GTTGTGTTGGTGGACAATTCGCATGTGAGCAATGCCCTGATTAATCTGTATGCCAAGTGT
GGTATTGTCAACGATGCAAGGCTGATATGA

Peptide Sequence

PEP ID

Os12t0130900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:1494588:1495560:-1 gene:Os12g0130900 transcript:Os12t0130900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0130900-01)
Sequence

VGRRRRWLIGWLEERGDPVHLAAPSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAVLR
APPLRYAVAVLSRLLPHGPLDPFPLNTVHRIAAGSFRPCVALELHRRRLAPPDTHTYPSL
LQACSRLLALREGECLHTEAAKNGFVQNSPVHLYGACGLFESVHKVFDEMPVHGQNLVSW
NSMLNSFAANGRPNEVLTVFREMLGVNFAPDGVTIVSVLTACAEIGALALGRRVHVYAEK
VVLVDNSHVSNALINLYAKCGIVNDARLI

Transcript Sequence

Transcript ID

Os12t0130900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:1494588:1495560:-1 gene:Os12g0130900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0130900-01)
Sequence

AACAGAGAACCGATTCTTTCCCCCAATCTCGCTGCTTCTCTCTCGAGTCTACAGGCGGCG
GCGGCGGCTAGAGCACAGCTCCTCCCACCGGCGAGCAGGAGAGGGGTCGGCGGCGGCGAG
AGGGCTAGGCTGGGGGGAGAGGGCTAGGTTGGGCGGCGGCGGCGGTGGCTGATAGGGTGG
TTGGAGGAGCGAGGCGATCCCGTCCACCTCGCCGCGCCATCCCTCGCTGCCGCCAAGCAG
ATCCATGCGCGGGCGCTCCGGGCCGGTGTGCCCACCTCCCACCCGCTCCTCGCCAAGCAC
CTCCTCTTCCACCTCGCCGTCCTCCGCGCGCCGCCGCTCCGCTACGCCGTGGCGGTACTC
TCCCGCCTCCTCCCGCACGGGCCACTAGACCCGTTCCCCCTCAACACCGTGCACCGCATC
GCTGCGGGCTCGTTCCGCCCGTGCGTCGCGCTCGAGCTCCACCGCCGCCGCCTCGCGCCG
CCCGACACGCACACCTACCCGTCGCTGCTCCAGGCTTGCTCGCGCCTCCTCGCGCTCCGC
GAAGGGGAGTGCCTCCATACCGAGGCCGCCAAGAACGGGTTCGTCCAAAACTCGCCCGTT
CATCTCTACGGCGCGTGTGGCCTGTTCGAGAGCGTGCACAAGGTGTTCGATGAAATGCCG
GTGCATGGGCAGAACCTCGTCTCGTGGAATTCGATGCTCAACAGCTTTGCGGCCAACGGG
CGCCCTAACGAGGTTCTCACTGTCTTCCGGGAGATGCTGGGCGTCAACTTTGCGCCAGAT
GGAGTCACCATAGTCAGTGTTCTAACCGCTTGTGCAGAGATTGGGGCGCTTGCTCTTGGG
AGGAGGGTTCATGTGTATGCGGAAAAGGTTGTGTTGGTGGACAATTCGCATGTGAGCAAT
GCCCTGATTAATCTGTATGCCAAGTGTGGTATTGTCAACGATGCAAGGCTGATATGACTT
CATATGATTGTGT