Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0128800-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:1368900:1375574:1 gene:Os12g0128800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I. (Os12t0128800-01);Similar to cDNA clone:J033138B08, full insert sequence. (Os12t0128800-02)
Sequence

TGTTTTGAAGCTGGAGCCAACACATCAAACATTGACCCATGGTCCATCATTGGAGATGAA
TCCTCTGTTCACGTGACAACTGATCGCTCATCCTGTTTCAGTCAAAATCCTGTTGCTGTA
AGGATAGAGGTTGTCTGTGACGATTGTCCAGCCGGTGGTGTTGGAATTTACAATCCAGGA
TTTTGGGGCATGAATGTAGAAGAAGGAAAGGCATATAATCTGGTCATGCATATCAGATCA
TTAGAATCGGTGGAGTTGACAGCTTCACTCACATGCTCAAATGGATCGCAAAATCTTGCA
TCAAATTCTGTTCGAGAAACTAATTTGTCAACTTGGACAAAGATAGAGCTACAGTTACTA
GCTCAAGGGACATGCAGAACTTCAAGACTTGAACTAACAACTAGGAAAAGGGGAGTAATA
TGGCTTGATCAGGTGTCACTTATGCCTTCAGAAACATACAAGGGCCATGGTTTTCGCAAG
GAACTCATGTACATGCTTTTGGACTTAAAACCACGGTTTCTACGGTTTCCTGGGGGTTGC
TTTGTCGAAGGCAATTGGTTAAAAAATGCATTCAGGTGGAAGGAAACTATTGGTCCATGG
GAAGAGAGACCTGGACACTATGGAGATGTCTGGCACTACTGGACGGATGATGGCCTTGGG
TATTATGAGTTACTCGAGCTTGCTGAAGACTTGGGTGCTAACCCTGTATGGGTGCTCAAC
ATTGGGATGAGTCACCATGATGCAGTTAATGGAACTATGCTCGCACCTTTTATAAAGGAT
GCAACTGACAGTCTTGAGTTTGCAAAGGGGAGTGACAAATCAACATGGGGCTCTGTTAGA
GCCACGATGGGGCACCCTGAACCATTCCCACTGAAGTATGTTGCACTAGGGAATGAAGAT
TGTGCTCCATTCAAGCTGATATACCGAGAAAATTATCCCAAGTTCTACAACGCCATAAAA
GAGGCTTATCCTGACATCCAAATAATTTCAAACTGTGATGGCTCGTCTGGGCCACTTGAT
CATCCTGCCGATCTCTATGACTACCATATATATGAAAATGCATCCACTGTGTTTTTCAAG
AAGAATGAATTTGATAGGACATCACGTAATGGTCCAAAGGTATTTGTAAGTGAGTATGCT
GTTAATGGTGAGGATGCTGGCAATGGAAGCCTTCTTGCATCATTGGCAGAAGCTGCTTTC
CTAATTGGTTTAGAGAAAAATAGTGATGTCGTTCAGATGGCATGTTATGCACCACTCTTC
GTGAATGACAACGATCGCGTCTGGAACCCAGATGCGATTGTCTTCAACTCCTGGCAACAG
TATGGAACTCCTAGTTATTGGATGCAGACATATTTCCGTGAATCAAGCGGTGCTATGATT
CATCCAATTATGATCAGTTCCAGCTACTCTGATTTATTGGCTGCCTCTGCAATCACCTGG
CAAGACGCTGAGAATACCTTTCTGAGAGTGAAGATAGTAAACTTCGGGCCAAATGCTGTG
AACCTCACAATATCTTCAAGTGGACTTCAAGCTGGTGTAGATACGGCAAAATCAACTGTG
ACTGTTCTCACATCCAGCAACTTGCTGGATGAAAATTCATTTAGTGAACCAAACAAGGTC
GTGCCAGTTGCCAGCGAGTTGCCGAATGCAGCAGAACAGATGCAAGTCTTACATTTTCCT
TACTCAATTTGTTCGTTTGATCTTGCTCTGGTTTAG

Peptide Sequence

PEP ID

Os12t0128800-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:1368900:1375574:1 gene:Os12g0128800 transcript:Os12t0128800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I. (Os12t0128800-01);Similar to cDNA clone:J033138B08, full insert sequence. (Os12t0128800-02)
Sequence

CFEAGANTSNIDPWSIIGDESSVHVTTDRSSCFSQNPVAVRIEVVCDDCPAGGVGIYNPG
FWGMNVEEGKAYNLVMHIRSLESVELTASLTCSNGSQNLASNSVRETNLSTWTKIELQLL
AQGTCRTSRLELTTRKRGVIWLDQVSLMPSETYKGHGFRKELMYMLLDLKPRFLRFPGGC
FVEGNWLKNAFRWKETIGPWEERPGHYGDVWHYWTDDGLGYYELLELAEDLGANPVWVLN
IGMSHHDAVNGTMLAPFIKDATDSLEFAKGSDKSTWGSVRATMGHPEPFPLKYVALGNED
CAPFKLIYRENYPKFYNAIKEAYPDIQIISNCDGSSGPLDHPADLYDYHIYENASTVFFK
KNEFDRTSRNGPKVFVSEYAVNGEDAGNGSLLASLAEAAFLIGLEKNSDVVQMACYAPLF
VNDNDRVWNPDAIVFNSWQQYGTPSYWMQTYFRESSGAMIHPIMISSSYSDLLAASAITW
QDAENTFLRVKIVNFGPNAVNLTISSSGLQAGVDTAKSTVTVLTSSNLLDENSFSEPNKV
VPVASELPNAAEQMQVLHFPYSICSFDLALV

Transcript Sequence

Transcript ID

Os12t0128800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:1368900:1375574:1 gene:Os12g0128800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I. (Os12t0128800-01);Similar to cDNA clone:J033138B08, full insert sequence. (Os12t0128800-02)
Sequence

AGCCGTTGGATGGCCATCCAACGGTTGATGGATCGTCTTCAACCTCCAGCTCATGGCTAC
TCTCTCTCTCTCTCTCTCTCCTCTTGAACGATTCCCTCCTGCCTCCTCCCTCCCCGCACC
TGCACCTGCACCATCTCCGGCGTCTCTCGCGGCCGGATCCGCCGCCTCCTCACCCACCGC
CCAAGGCCTCCCCTCCCTGTATACGAAGCCCCGATGAACTGCTCCTCCCTCCACAACCCC
TCTATACCCCGCCAGATCCACTCCACGGCCCCACCCCAACCCAATATCCTAATCCATTCG
CCCTCTCTCGCCGGGGAAGAAAGCCAAAAGGAGGAGGAGGAGGCTCATCGGCGCAGGGAT
GCTCGGGATTCACCGGCCAGCTCGACCTCGTTTTGGTGGGGGTGGTGTGTGTGAGAGTGA
GTAACGAAGGCTTGAGGTTGAAGAAGCAACATGGATGGTTTGGATTTGTGATCTACTGCC
AAGAATATTTGGGGAGAAATCAATCACCTCATGTATGGCAAATGCAAGGATTTTTGAGGA
GAAATCAACCGGCTGATGTTTTGAAGCTGGAGCCAACACATCAAACATTGACCCATGGTC
CATCATTGGAGATGAATCCTCTGTTCACGTGACAACTGATCGCTCATCCTGTTTCAGTCA
AAATCCTGTTGCTGTAAGGATAGAGGTTGTCTGTGACGATTGTCCAGCCGGTGGTGTTGG
AATTTACAATCCAGGATTTTGGGGCATGAATGTAGAAGAAGGAAAGGCATATAATCTGGT
CATGCATATCAGATCATTAGAATCGGTGGAGTTGACAGCTTCACTCACATGCTCAAATGG
ATCGCAAAATCTTGCATCAAATTCTGTTCGAGAAACTAATTTGTCAACTTGGACAAAGAT
AGAGCTACAGTTACTAGCTCAAGGGACATGCAGAACTTCAAGACTTGAACTAACAACTAG
GAAAAGGGGAGTAATATGGCTTGATCAGGTGTCACTTATGCCTTCAGAAACATACAAGGG
CCATGGTTTTCGCAAGGAACTCATGTACATGCTTTTGGACTTAAAACCACGGTTTCTACG
GTTTCCTGGGGGTTGCTTTGTCGAAGGCAATTGGTTAAAAAATGCATTCAGGTGGAAGGA
AACTATTGGTCCATGGGAAGAGAGACCTGGACACTATGGAGATGTCTGGCACTACTGGAC
GGATGATGGCCTTGGGTATTATGAGTTACTCGAGCTTGCTGAAGACTTGGGTGCTAACCC
TGTATGGGTGCTCAACATTGGGATGAGTCACCATGATGCAGTTAATGGAACTATGCTCGC
ACCTTTTATAAAGGATGCAACTGACAGTCTTGAGTTTGCAAAGGGGAGTGACAAATCAAC
ATGGGGCTCTGTTAGAGCCACGATGGGGCACCCTGAACCATTCCCACTGAAGTATGTTGC
ACTAGGGAATGAAGATTGTGCTCCATTCAAGCTGATATACCGAGAAAATTATCCCAAGTT
CTACAACGCCATAAAAGAGGCTTATCCTGACATCCAAATAATTTCAAACTGTGATGGCTC
GTCTGGGCCACTTGATCATCCTGCCGATCTCTATGACTACCATATATATGAAAATGCATC
CACTGTGTTTTTCAAGAAGAATGAATTTGATAGGACATCACGTAATGGTCCAAAGGTATT
TGTAAGTGAGTATGCTGTTAATGGTGAGGATGCTGGCAATGGAAGCCTTCTTGCATCATT
GGCAGAAGCTGCTTTCCTAATTGGTTTAGAGAAAAATAGTGATGTCGTTCAGATGGCATG
TTATGCACCACTCTTCGTGAATGACAACGATCGCGTCTGGAACCCAGATGCGATTGTCTT
CAACTCCTGGCAACAGTATGGAACTCCTAGTTATTGGATGCAGACATATTTCCGTGAATC
AAGCGGTGCTATGATTCATCCAATTATGATCAGTTCCAGCTACTCTGATTTATTGGCTGC
CTCTGCAATCACCTGGCAAGACGCTGAGAATACCTTTCTGAGAGTGAAGATAGTAAACTT
CGGGCCAAATGCTGTGAACCTCACAATATCTTCAAGTGGACTTCAAGCTGGTGTAGATAC
GGCAAAATCAACTGTGACTGTTCTCACATCCAGCAACTTGCTGGATGAAAATTCATTTAG
TGAACCAAACAAGGTCGTGCCAGTTGCCAGCGAGTTGCCGAATGCAGCAGAACAGATGCA
AGTCTTACATTTTCCTTACTCAATTTGTTCGTTTGATCTTGCTCTGGTTTAGCCGTTTAA
TTAGCACAAGTTTATCAGGCTAACATGTTGGGACGCTGTTTCTGTCCTTAATGACATCCC
AGGATTTCATAGTGATCAAAAGCTAATTATTCCACTGTATCAGAGCCCATTAGGCCAAGG
ATGGTTTTAATTAAAGCTTAGTTTGAACAACTCGCTTTATTTATAATATATCCCTTTATT
GCTTCTAAGAAATCATCGAGTTGTTTGTTTGGATATTAGTAATGATATGGGAATTATTAA
GTTGACCAGATAAAAATGTAGAATGCATCAAAAAGGAACTTGGTATCAATGAGATCACGT
CTCCTTTTTGTTTGATAGCCATGGATATGATGTTTCTATAATATGGGGATGGTGATGAGT
CTCTCTTTTGTTTTCTTGCGGTAATGCAGCTCTGTTAATTTCTCTATTACGGTTTGGCAA
GATGGCCGGTGTCTCCGGATGTGATTTTTTTTGAGTAAATTTCACTTTGGACCTGTTTTA
TTGACCAAAGTTTCACCATG