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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0127200-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:1309549:1310703:-1 gene:Os12g0127200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os12t0127200-01)
Sequence

ATGGCCGACCGCGTCCACCCCATGCCCGCTCCACCGCCGCCGTCCTCCTCCCCTCCGCCG
GGACACGACGCCGCCGCCGCCACGGAGACCACGCCGCTGCATCCCAGCTTCCGCGGCGCG
CCGCCGCCGTCTCCGGGCACGTACATCATCCAAATCCCCAAGGACCAGGTCCTCCGCGTC
CCGCCGCCGGACCGCGCGCGCCGCTACAAGAAGCTCGCGGCGCGGCCCGCACGCCGCCGC
CGGCTCCGCCACGCGTGCTGCGGCGCCTTCTGCGGGGTCCTCCTCCTGCTCCTCCTCGCC
GCCGCCTTCGTCGGCGTCGTCTACCTCGTCTTCCGCCCCCTCGCGCCGTCCTTCTCCGTC
GCCTCCCTCTCCATCCGCGGCCTCGACGCCCTCGCCGTGTCGTCGTTAACTCCGCAGATC
GACGCCGCCGTGCGCGCGGACAACGGCGCCAACAAGAAGACCGGCATCGACTACCGCGGC
GGCGGGGAGGTGACCGTCTCCTACTCCGGCGAGCGGCTCGCCGCCGGCCCGTGGCCCGCG
TTCCACCAGGCGCCGAGGAACGTGACGGTGTTCTCGACGGCGTTGGCCGGAGGAGGCGTG
AGCCTCACGGAGGAGCAGAGGAAGCAGCTCGCCGCGGATCAGGCCGCCGGCGCGGTGCCC
CTGGCTGTGGACGCGATCGTGCCGGTGAGGTTGAGGTTCGGGAAGGTGCTCCGGACGTGG
ACGGTGGACGTGAAGGCGAGGTGCGAGGTGACGGTGAACAAGCTGGCGGCGGCGCCGGCG
AACAGGGGGTGCATGGTCAAGGTCCGGCCGCTCTGGTGGTGGTGGTGA

Peptide Sequence

PEP ID

Os12t0127200-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:1309549:1310703:-1 gene:Os12g0127200 transcript:Os12t0127200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os12t0127200-01)
Sequence

MADRVHPMPAPPPPSSSPPPGHDAAAATETTPLHPSFRGAPPPSPGTYIIQIPKDQVLRV
PPPDRARRYKKLAARPARRRRLRHACCGAFCGVLLLLLLAAAFVGVVYLVFRPLAPSFSV
ASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYSGERLAAGPWPA
FHQAPRNVTVFSTALAGGGVSLTEEQRKQLAADQAAGAVPLAVDAIVPVRLRFGKVLRTW
TVDVKARCEVTVNKLAAAPANRGCMVKVRPLWWWW

Transcript Sequence

Transcript ID

Os12t0127200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:1309549:1310703:-1 gene:Os12g0127200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os12t0127200-01)
Sequence

GCACGCCACGCCACTCGGTCACTCTTCATTTCGTCGAACACCTTGCCTCACAACCACCCC
CCATGGCCGACCGCGTCCACCCCATGCCCGCTCCACCGCCGCCGTCCTCCTCCCCTCCGC
CGGGACACGACGCCGCCGCCGCCACGGAGACCACGCCGCTGCATCCCAGCTTCCGCGGCG
CGCCGCCGCCGTCTCCGGGCACGTACATCATCCAAATCCCCAAGGACCAGGTCCTCCGCG
TCCCGCCGCCGGACCGCGCGCGCCGCTACAAGAAGCTCGCGGCGCGGCCCGCACGCCGCC
GCCGGCTCCGCCACGCGTGCTGCGGCGCCTTCTGCGGGGTCCTCCTCCTGCTCCTCCTCG
CCGCCGCCTTCGTCGGCGTCGTCTACCTCGTCTTCCGCCCCCTCGCGCCGTCCTTCTCCG
TCGCCTCCCTCTCCATCCGCGGCCTCGACGCCCTCGCCGTGTCGTCGTTAACTCCGCAGA
TCGACGCCGCCGTGCGCGCGGACAACGGCGCCAACAAGAAGACCGGCATCGACTACCGCG
GCGGCGGGGAGGTGACCGTCTCCTACTCCGGCGAGCGGCTCGCCGCCGGCCCGTGGCCCG
CGTTCCACCAGGCGCCGAGGAACGTGACGGTGTTCTCGACGGCGTTGGCCGGAGGAGGCG
TGAGCCTCACGGAGGAGCAGAGGAAGCAGCTCGCCGCGGATCAGGCCGCCGGCGCGGTGC
CCCTGGCTGTGGACGCGATCGTGCCGGTGAGGTTGAGGTTCGGGAAGGTGCTCCGGACGT
GGACGGTGGACGTGAAGGCGAGGTGCGAGGTGACGGTGAACAAGCTGGCGGCGGCGCCGG
CGAACAGGGGGTGCATGGTCAAGGTCCGGCCGCTCTGGTGGTGGTGGTGATCGCCGGCGG
CGGCGGCGCCGCCGCTGATGGTTGGATGGGTAGTACATTAACGGCTACAGCCTAGTATAG
CTAGTAACAGCTGTGCATTGAACAGAGAGATATTACAGTACTTATTATACCTGTGAATTG
AATTAATTTCATAATTAGTGTCCAATTTTGGGGTGCATTTCAAGCTGTTGATGAGGGGAT
TAGTGGATTACCACCAGTGTAGCATTTTGCATACTTGCAGTTGCAGATGTAATTGGTGAA
ATACAGATGGTTTTC