Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0126000-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:1251405:1255942:-1 gene:Os12g0126000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Multi antimicrobial extrusion protein MatE family protein. (Os12t0126000-01)
Sequence

ATGGAGAGGCCGGGTGATGAACATGATGACTGCAGGACGGCTCCTCTGCTGGAGCCTAAG
CACGCTCATGGCGAAGGCAGCAACAACGACAAGCAAGAAGAAGATGAAGAGGAGGTTGGG
TCGTTGGGGCCGCGGGTGTTGGTGGAGAGCAAGAAGCTGTGGGTGGTGGCGGGTCCTTCC
ATCTGCGCGCGCTTCTCCACCTTCGGCGTCACCGTCATCAGCCAAGCCTTCATCGGCCAC
ATCGGCGCCACCGAGCTCGCCGGATACGCTCTCGTCTCCACCGTCCTCATGCGCTTCAGC
GGCGGCATCCTCCTAGGCATGGCAAGTGCATTGGAAACATTGTGTGGGCAATCATATGGC
GCCAAGCAATACCACATGTTGGGCATCTATCTACAACGTTCATGGATAGTTCTCTTGTGT
TGTGCAGTCCTCCTCCTCCCGATATACCTCTTCACCACTCCACTCCTAATTTTTCTTGGC
CAGGATCCTAAGATCGCTGCTATGGCCGGCACTATTTCATTGTGGTATATCCCTGTTATG
ATATCCAATGTTGGGAACTTCACGCTCCAAATGTACCTACAAGCACAGAGCAAGAACATG
ATTGTCACTTATCTTGCCATGCTCAATCTTGGGCTTCACCTTTTCCTATCATGGCTTTTA
ACGGTCCAGTTCCACCTTGGCCTTGCTGGGGTCATGGGCTCCATGGTCATTGCCTACTGG
ATTCCAGTATTTGGTCAGCTTGCTTTTGTCTTCTTTGGTGGTTGCCCTCTAACATGGACA
GGATTCTCATCTGCTGCTTTTACTGAACTCGGTGCTATTGTCAAGCTTTCACTGTCTTCT
GGAGTGATGCTTTGTGTGGAATTATGGTACAACACAATTTTGGTTCTCCTCACTGGTTAT
ATGAAGAATGCAGAGATTGCTCTTGATGCTCTTTCAATATGCCTTAATATCAATGGTTGG
GAGATGATGATTTCTATAGGGTTTTTATCTGCAACAGGAGTGCGGGTGGCAAATGAACTT
GGAGCTGGAAGCGCAAGAAGGGCTAAGTTTGCCATTTTCAATGTGGTCACCACTTCTTTC
TCGATAGGATTTATGTTGTTTGTGCTCTTCCTTATCTTTCGTGGAAGGCTTGCATACATA
TTTACTGAAAGTAAGGTAGTAGCAGATGCAGTTGCGGAGCTTTCTCCCTTGCTAGCCTTC
TCCATTTTGTTGAATAGTATTCAACCAGTGCTCTCAGGTGTCGCTGTTGGATCAGGTTGG
CAAAGTGTAGTTGCCTATGTTAATGTTACATCATATTACTTGTTCGGTATCCCTATTGGT
GTAATACTAGGCTATGTGCTAGGATTTCAAGTAAAGGGCATTTGGATTGGTATGCTTCTT
GGTACGCTAGTCCAGACTATTGTGCTTCTATTTATCACTCTTAGAACTGATTGGGAAAAA
CAGGTAGAGATTGCTCGACAGAGATTAAACCGCTGGTCTATGGATGAGAATGGGAGACAA
CAGAATCCGGGTGAAAATCCATGA

Peptide Sequence

PEP ID

Os12t0126000-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:1251405:1255942:-1 gene:Os12g0126000 transcript:Os12t0126000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Multi antimicrobial extrusion protein MatE family protein. (Os12t0126000-01)
Sequence

MERPGDEHDDCRTAPLLEPKHAHGEGSNNDKQEEDEEEVGSLGPRVLVESKKLWVVAGPS
ICARFSTFGVTVISQAFIGHIGATELAGYALVSTVLMRFSGGILLGMASALETLCGQSYG
AKQYHMLGIYLQRSWIVLLCCAVLLLPIYLFTTPLLIFLGQDPKIAAMAGTISLWYIPVM
ISNVGNFTLQMYLQAQSKNMIVTYLAMLNLGLHLFLSWLLTVQFHLGLAGVMGSMVIAYW
IPVFGQLAFVFFGGCPLTWTGFSSAAFTELGAIVKLSLSSGVMLCVELWYNTILVLLTGY
MKNAEIALDALSICLNINGWEMMISIGFLSATGVRVANELGAGSARRAKFAIFNVVTTSF
SIGFMLFVLFLIFRGRLAYIFTESKVVADAVAELSPLLAFSILLNSIQPVLSGVAVGSGW
QSVVAYVNVTSYYLFGIPIGVILGYVLGFQVKGIWIGMLLGTLVQTIVLLFITLRTDWEK
QVEIARQRLNRWSMDENGRQQNPGENP

Transcript Sequence

Transcript ID

Os12t0126000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:1251405:1255942:-1 gene:Os12g0126000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Multi antimicrobial extrusion protein MatE family protein. (Os12t0126000-01)
Sequence

TGTGCTAGGAGAAATGGAGAGGCCGGGTGATGAACATGATGACTGCAGGACGGCTCCTCT
GCTGGAGCCTAAGCACGCTCATGGCGAAGGCAGCAACAACGACAAGCAAGAAGAAGATGA
AGAGGAGGTTGGGTCGTTGGGGCCGCGGGTGTTGGTGGAGAGCAAGAAGCTGTGGGTGGT
GGCGGGTCCTTCCATCTGCGCGCGCTTCTCCACCTTCGGCGTCACCGTCATCAGCCAAGC
CTTCATCGGCCACATCGGCGCCACCGAGCTCGCCGGATACGCTCTCGTCTCCACCGTCCT
CATGCGCTTCAGCGGCGGCATCCTCCTAGGCATGGCAAGTGCATTGGAAACATTGTGTGG
GCAATCATATGGCGCCAAGCAATACCACATGTTGGGCATCTATCTACAACGTTCATGGAT
AGTTCTCTTGTGTTGTGCAGTCCTCCTCCTCCCGATATACCTCTTCACCACTCCACTCCT
AATTTTTCTTGGCCAGGATCCTAAGATCGCTGCTATGGCCGGCACTATTTCATTGTGGTA
TATCCCTGTTATGATATCCAATGTTGGGAACTTCACGCTCCAAATGTACCTACAAGCACA
GAGCAAGAACATGATTGTCACTTATCTTGCCATGCTCAATCTTGGGCTTCACCTTTTCCT
ATCATGGCTTTTAACGGTCCAGTTCCACCTTGGCCTTGCTGGGGTCATGGGCTCCATGGT
CATTGCCTACTGGATTCCAGTATTTGGTCAGCTTGCTTTTGTCTTCTTTGGTGGTTGCCC
TCTAACATGGACAGGATTCTCATCTGCTGCTTTTACTGAACTCGGTGCTATTGTCAAGCT
TTCACTGTCTTCTGGAGTGATGCTTTGTGTGGAATTATGGTACAACACAATTTTGGTTCT
CCTCACTGGTTATATGAAGAATGCAGAGATTGCTCTTGATGCTCTTTCAATATGCCTTAA
TATCAATGGTTGGGAGATGATGATTTCTATAGGGTTTTTATCTGCAACAGGAGTGCGGGT
GGCAAATGAACTTGGAGCTGGAAGCGCAAGAAGGGCTAAGTTTGCCATTTTCAATGTGGT
CACCACTTCTTTCTCGATAGGATTTATGTTGTTTGTGCTCTTCCTTATCTTTCGTGGAAG
GCTTGCATACATATTTACTGAAAGTAAGGTAGTAGCAGATGCAGTTGCGGAGCTTTCTCC
CTTGCTAGCCTTCTCCATTTTGTTGAATAGTATTCAACCAGTGCTCTCAGGTGTCGCTGT
TGGATCAGGTTGGCAAAGTGTAGTTGCCTATGTTAATGTTACATCATATTACTTGTTCGG
TATCCCTATTGGTGTAATACTAGGCTATGTGCTAGGATTTCAAGTAAAGGGCATTTGGAT
TGGTATGCTTCTTGGTACGCTAGTCCAGACTATTGTGCTTCTATTTATCACTCTTAGAAC
TGATTGGGAAAAACAGGTAGAGATTGCTCGACAGAGATTAAACCGCTGGTCTATGGATGA
GAATGGGAGACAACAGAATCCGGGTGAAAATCCATGATCTAAAACTTCTGCACACTTGTA
ATGAATTATGGTGATCTATGAATCAGCTTGTTCTAATGGGATTGCCCTCAGAGTTTAAGA
TCCTTCAAGGTGACATCATCCTTCAATGAACCTATAAATGGCTTGGAATGATGTTTTTCC
CCATGTGTCACACCATGGAAAAACCGTGATGTTATTGAAGGAACCTTATATATATATGGT
CGTAAATTATCC