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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0124200-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:1169749:1170460:-1 gene:Os12g0124200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPS16A description:Similar to 40S ribosomal protein S16. (Os12t0124200-01)
Sequence

ATGGCCGCCGCGCTCACCCGCCCGCCTCCAGGCACGGTCCAGTGCTTCGGGCGCAAGAAG
ACGGCGGTGGCCGTCTCCTACTGCAAGCCGGGGCGCGGGCTGATCAAGGTGAACGGCGTC
CCGATCGAGCTGATCAGGCCGGAGATGCTCCGCCTCAAGGCGTTCGAGCCCATCCTGCTC
GCGGGGCGCTCGCGCTTCAAGGACATCGACATGAGGATCCGCGTCCGCGGCGGTGGGAAG
ACGTCGCAGATCTACGCGATCCGCCAGGCCATCGCCAAGGCCCTCGTCGCCTACTACCAG
AAGTACGTCGACGAGGCGTCCAAGAAGGAGGTCAAGGACATCTTTGCCCGCTACGACCGC
ACCCTCCTCGTCGCCGACCCCAGGCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGCGCC
CGCGCAAGGTTCCAGAAGTCGTACCGCTGA

Peptide Sequence

PEP ID

Os12t0124200-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:1169749:1170460:-1 gene:Os12g0124200 transcript:Os12t0124200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPS16A description:Similar to 40S ribosomal protein S16. (Os12t0124200-01)
Sequence

MAAALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILL
AGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDR
TLLVADPRRCEPKKFGGRGARARFQKSYR

Transcript Sequence

Transcript ID

Os12t0124200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:1169749:1170460:-1 gene:Os12g0124200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPS16A description:Similar to 40S ribosomal protein S16. (Os12t0124200-01)
Sequence

CCCTTCGCCGCCGCCTCTCTCCCGCACCAAGCTGCCTGAGCCCTAGCCGCCGCCGCCGCC
GCCGCGCGCCACCACCGCAACCATGGCCGCCGCGCTCACCCGCCCGCCTCCAGGCACGGT
CCAGTGCTTCGGGCGCAAGAAGACGGCGGTGGCCGTCTCCTACTGCAAGCCGGGGCGCGG
GCTGATCAAGGTGAACGGCGTCCCGATCGAGCTGATCAGGCCGGAGATGCTCCGCCTCAA
GGCGTTCGAGCCCATCCTGCTCGCGGGGCGCTCGCGCTTCAAGGACATCGACATGAGGAT
CCGCGTCCGCGGCGGTGGGAAGACGTCGCAGATCTACGCGATCCGCCAGGCCATCGCCAA
GGCCCTCGTCGCCTACTACCAGAAGTACGTCGACGAGGCGTCCAAGAAGGAGGTCAAGGA
CATCTTTGCCCGCTACGACCGCACCCTCCTCGTCGCCGACCCCAGGCGCTGCGAGCCCAA
GAAGTTCGGTGGTCGCGGCGCCCGCGCAAGGTTCCAGAAGTCGTACCGCTGAGCGCTCGC
CGGACCGATTCGGAGCGGTGTTCTCTTTTCCACCCTATCAATGGAGCTACTTGGCTTGTT
CTACATCTATCTAGCTACTGCATTACTTTCAAGTTTAGTCTTTTAAAACTTAGCCCTGAA
CCTTGCCTTTTTGACATTGTGAAATGGATGTGATTGAAATGTTTAAGACTCT