Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0121400-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:1012305:1015316:-1 gene:Os12g0121400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Snf7 family protein. (Os12t0121400-00)
Sequence

ATGCTGAAGAAACTGCTATCAAAGCCCAAGAGCAAGAAGAAGAAGGAGGCTGCCTCCTCT
GCCCTCCCCACTTTGGATAGGCTTCATGAGACTCTAGAAATGCTGGAGAAGAAAGAGTGT
TTCCTTCAGAAAAAGGCTTCTGCAGAAGTCGAAAGAGCTAAGGACTATACAAAAGCTAAG
AACAAAAGCGCTGCAATTCAATGTCTAAAGAAAAAGAAGTTGTATGAAACACAGATTGAG
CAGCTAGCAAACTTCCAATTACGGGTTCATGATCAGATAATAATGCTTGAGAGTGCAAAG
GCAACCACAGATACTGTTGATGCTTTGCGCTCTGGATCATCTGCTGTCAAAGCTATTCAC
CAGTCAGTGAGTATCGATGACATTGAAAATGCCATTGAAGAGGCAAATGAACACACAGAG
AATATGAGGCAGATACAGGAGGCCCTTGCAACACCAATTGGCGCTTCTGCTGATTTTGAC
GAGGATGAGCTAGAAGCAGAGCTGGAAGATCTAGAGGAGGAAGAGCTCGAGAATGATCTG
CCTGAACCACCTCAGAGGACAAGTATGGAACCTTCAGCGAGAGTTACGACTACTCAACCA
GCCAATGATTTGGCTGAACTGACCAAACTTCAAGCAGAGATGGCGCTTTGA

Peptide Sequence

PEP ID

Os12t0121400-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:1012305:1015316:-1 gene:Os12g0121400 transcript:Os12t0121400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Snf7 family protein. (Os12t0121400-00)
Sequence

MLKKLLSKPKSKKKKEAASSALPTLDRLHETLEMLEKKECFLQKKASAEVERAKDYTKAK
NKSAAIQCLKKKKLYETQIEQLANFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIH
QSVSIDDIENAIEEANEHTENMRQIQEALATPIGASADFDEDELEAELEDLEEEELENDL
PEPPQRTSMEPSARVTTTQPANDLAELTKLQAEMAL

Transcript Sequence

Transcript ID

Os12t0121400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:1012305:1015316:-1 gene:Os12g0121400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Snf7 family protein. (Os12t0121400-00)
Sequence

CCTTGGCCATCTCTGCCTTTTCCTTCCTACTTTTCTCAAGGAATCTGCTTCCAACCACCT
TTCCCTTTGCTTCCCCTTCCCCTCTCTTAATCTTCAATCCTACTGGAGAGGCTATATACA
TTCATCATTCACCTCTTTATTCCCACACAGGCTATCGTCACCCGAGATTGAAGATCAAGT
GAGTGTTACAAGAAGATGCTGAAGAAACTGCTATCAAAGCCCAAGAGCAAGAAGAAGAAG
GAGGCTGCCTCCTCTGCCCTCCCCACTTTGGATAGGCTTCATGAGACTCTAGAAATGCTG
GAGAAGAAAGAGTGTTTCCTTCAGAAAAAGGCTTCTGCAGAAGTCGAAAGAGCTAAGGAC
TATACAAAAGCTAAGAACAAAAGCGCTGCAATTCAATGTCTAAAGAAAAAGAAGTTGTAT
GAAACACAGATTGAGCAGCTAGCAAACTTCCAATTACGGGTTCATGATCAGATAATAATG
CTTGAGAGTGCAAAGGCAACCACAGATACTGTTGATGCTTTGCGCTCTGGATCATCTGCT
GTCAAAGCTATTCACCAGTCAGTGAGTATCGATGACATTGAAAATGCCATTGAAGAGGCA
AATGAACACACAGAGAATATGAGGCAGATACAGGAGGCCCTTGCAACACCAATTGGCGCT
TCTGCTGATTTTGACGAGGATGAGCTAGAAGCAGAGCTGGAAGATCTAGAGGAGGAAGAG
CTCGAGAATGATCTGCCTGAACCACCTCAGAGGACAAGTATGGAACCTTCAGCGAGAGTT
ACGACTACTCAACCAGCCAATGATTTGGCTGAACTGACCAAACTTCAAGCAGAGATGGCG
CTTTGACCGCAGTTTGGACGGAATTGTCTGTATTTTGCTGACATCCTGTTTGTGTAGTGT
ACTCGTTTTTTAACATGTTGTAAATTCAGTTTGCTGTAGAAAAAGCCCTTCCTTTTATGC
TAATCACTGTGTTTCTTCTTCGC