Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0119800-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:944441:945546:-1 gene:Os12g0119800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Harpin-induced protein 1 containing protein, expressed. (Os12t0119800-01)
Sequence

ATGGCCTCCACCACCGCCACCGCCGCCGGCAACGGCAGCGGCAGCATCCTCCCCACCCAC
ACCACCACGGCGCCACCCTTCAGAGCCCATAAGGACGCCGACCTGGAATCCACGACGCGG
CGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTTGTGGTGCTCCTCGTC
CTTGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGACCCCACCACC
CACCTCGTCTCCACCCGCCTCACCGGCCTCTCCCCGCGCCTCTCCTTCCCGGCCACGTCG
GTCCAGCTCAACGTCACGCTGCTCATCACCGTGGCGGTGCACAACCCCAACCCGGCCTCC
TTCACCTACGCCACGGGGGGCCACACCGACCTCACCTACAGGGGCGCACACGTCGGCGAC
GCCGAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCAACGTCACCATGGCGCTC
ACCCTGCAGGCCGACCGCTTCGCCGGCGACCTCACGCAGCTCGTCTCCGACGTGATGGGC
GGGTCGGTGGCGCTGGACGCGAGCACTCGGATCCCCGGGAGGGTGGCCATCCTGGGCGTG
TTCAAGCGCCACGCGGTGGCGTACTCGGATTGCCATTTCGTGTTCGGCGTCACGGAGATG
GCCGTGCGTAGCCAGCAGTGCAGCGACCGCACCAAGCTCTGA

Peptide Sequence

PEP ID

Os12t0119800-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:944441:945546:-1 gene:Os12g0119800 transcript:Os12t0119800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Harpin-induced protein 1 containing protein, expressed. (Os12t0119800-01)
Sequence

MASTTATAAGNGSGSILPTHTTTAPPFRAHKDADLESTTRRRRRRCLCCCLLVTLVVLLV
LAITLLVLFLTVLRVRDPTTHLVSTRLTGLSPRLSFPATSVQLNVTLLITVAVHNPNPAS
FTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVSDVMG
GSVALDASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL

Transcript Sequence

Transcript ID

Os12t0119800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:944441:945546:-1 gene:Os12g0119800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Harpin-induced protein 1 containing protein, expressed. (Os12t0119800-01)
Sequence

ATCGAATCAAATTACTACTAGTCTCCCTTCCACGCCACGCACACGCACCCAATCCCCTAT
CGATCGAGAGACATGGCCTCCACCACCGCCACCGCCGCCGGCAACGGCAGCGGCAGCATC
CTCCCCACCCACACCACCACGGCGCCACCCTTCAGAGCCCATAAGGACGCCGACCTGGAA
TCCACGACGCGGCGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTTGTG
GTGCTCCTCGTCCTTGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGC
GACCCCACCACCCACCTCGTCTCCACCCGCCTCACCGGCCTCTCCCCGCGCCTCTCCTTC
CCGGCCACGTCGGTCCAGCTCAACGTCACGCTGCTCATCACCGTGGCGGTGCACAACCCC
AACCCGGCCTCCTTCACCTACGCCACGGGGGGCCACACCGACCTCACCTACAGGGGCGCA
CACGTCGGCGACGCCGAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCAACGTC
ACCATGGCGCTCACCCTGCAGGCCGACCGCTTCGCCGGCGACCTCACGCAGCTCGTCTCC
GACGTGATGGGCGGGTCGGTGGCGCTGGACGCGAGCACTCGGATCCCCGGGAGGGTGGCC
ATCCTGGGCGTGTTCAAGCGCCACGCGGTGGCGTACTCGGATTGCCATTTCGTGTTCGGC
GTCACGGAGATGGCCGTGCGTAGCCAGCAGTGCAGCGACCGCACCAAGCTCTGATTGATC
ATGTGATTCCAACTTAATTTGCAAGTTTCCAAGCACGCAACGTAAGGTGGGCATGCCGCA
TCGCGACGTGGGACAAGACGAGAAGCCGTATGATATGCTGCTTTGTTACGCAGGTGCACT
GCACTAGTAGTACATAGTAGAGTATTATATTCTACACGGGCGGCACATTAGTTCGTTACA
GATAGTATCAGATCAGGAATTCAGGATTCAGTGCTACGATTTTCTTCAATATTTCTTACT
GCGTGTTGGGATTGATTTGATTCATGTATATAACACGGTGTCAGTTTGGATATATATACA
GTAATTTCACTATTCTCTATTTCTTC