Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0117400-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:861211:863519:-1 gene:Os12g0117400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RPT2-like protein. (Os12t0117400-01)
Sequence	ATGGATCGGACCAGCCAGTGGGTCTCGTCGCCAGACATACCCGCCGATCTTCTCATCCGG ATCGCCGACGACGTCTTCCCTCTCCTTAAGGGGGTGATGGTGCCCAAGTGCGGCTACATC CGCAAGGCCGTCGCGGCGGCGCGCGGTGGCGCCACGGCCACCGTCGACCTCGACCTCTCC GCGCTGCCCGGCGGCGCCGACGCCTTCGACAAGGCTGCGCGCTACTGCTACGGCGCCAAC TTCGAGATATCCGTGCGCAACGCGGCCGCGCTCCTCTGCGCCGCCGCCTTCCTCGACATG CACCCAACGGACGGCGGCCTGGCGCGCCGCGTCGAGGAGTTCCTGGCCAAGGTCGGCCTC CGCACGCTGCCCGGCGCCGTCGCCGTGCTGCGCTACTGCGAGGGGCTCCTCCCGGCCGCC GAGGAGATCGGCGTCGTGCAGCGATCAGCTGACGCTATCGCGCTCAGGATCTGTAACGAG GTGCTGTTCCCGACGAGGTCGCCGCCCGAGTGGTGGACGGCGGAGCTCGCGGCCCTCTCG CCGGCGTCGTTCCACAAGGTCATCACGGCGCTGCGCTGCCGCCGCGCGGAGCCCGAGGTG CTTGTCGCTGCAGCCACCGCATACGCTGAGCTCTTGCTGGCCGAAGTGCTCGCCGCCGAC GGCCATGCTGCTGATCACTCCGGGATGCACCGCGCGCTTGTCGAGTCCGTGGTTGCCGTG CTCCCTTCCACGGACGACGCGCCCCTCCCCGCCGCGTTCCTCTGCCGCCTCCTCCATGTC GCCATCACCATCTGCGCATCCGCCAAGACGTGCCGTGACCTGGAGCTCCGCGTGGCGGCG GTGCTCGACCAGGCCACCGCGGGCGACCTGCTGACCGTCGCGCTCGACAGCGCCGGTGAG CGCGTCCAGAACGTCGACACCGTGCGCCGCATCATCACCGCCTTCGTGGAGCGCGACTCG GCGGCGTCATCGGGCGGCGCGAACGGCCGGAGCCGGAGGGCGTCCCTGAGCGGAGCCGGG GCGCTGCAGGGCGGCGGTGGCGCGATGCAGACGGTGGCGAAGACCGTGGACGAGGTCGCG GCGGAGATCGCGACGGAGGAGTCGCTGCCGATCTCCAAGTTCGTGGGGCTCGCCGGCGCG GTGCCGAAGGAGGCGCGCGCGACGCACGACTGCCTGTACCGCGCCGTCGACATCTACCTG AAGGCGCACCCGGCGCTGGAGGAGATGGAGAGGGAGAAGGTGTGCAGCGTGATGGACCCG CTGAAGCTGTCGTACCAGGGTCGCCTCCACGCGTCACAGAACAATCGGCTCCCGCTGCAG GCCGTGCTGAGCGCGCTCTACTACGACCGGCTCAAGCTCCGCAGCGGAGACGAGGGCGGC GGCGGGTGGGACGCGTATGGGAATGGCGTGATGAGGTCGTCGGCGGCGGGGTCGGCGAGG AAGCAGGCGAAGGAGGAGGCGTCGCTGGCGAGGGAGAACGAGGCGCTGCGGTCGGAGCTG GCGCGGATGCGGGCGTACGTGTCGGGGATGCAGCAGCAGAGCAAGGGGTCGTCGTCGTCG AGGGGGAAGAAGGGCTCGTGGTTGCGGACGTTGAGCCGGCTGAACCCGTTCAAGGCCGGC ATCTGGGGCAAGGACACGTCGGGCATCGTCGACGGGAAGACGGACGCCATGAATTCCGTC AAGTCCAAGAGGAGGAGGTTCTCCATTAGCTAG

Peptide Sequence

PEP ID	Os12t0117400-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:861211:863519:-1 gene:Os12g0117400 transcript:Os12t0117400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RPT2-like protein. (Os12t0117400-01)
Sequence	MDRTSQWVSSPDIPADLLIRIADDVFPLLKGVMVPKCGYIRKAVAAARGGATATVDLDLS ALPGGADAFDKAARYCYGANFEISVRNAAALLCAAAFLDMHPTDGGLARRVEEFLAKVGL RTLPGAVAVLRYCEGLLPAAEEIGVVQRSADAIALRICNEVLFPTRSPPEWWTAELAALS PASFHKVITALRCRRAEPEVLVAAATAYAELLLAEVLAADGHAADHSGMHRALVESVVAV LPSTDDAPLPAAFLCRLLHVAITICASAKTCRDLELRVAAVLDQATAGDLLTVALDSAGE RVQNVDTVRRIITAFVERDSAASSGGANGRSRRASLSGAGALQGGGGAMQTVAKTVDEVA AEIATEESLPISKFVGLAGAVPKEARATHDCLYRAVDIYLKAHPALEEMEREKVCSVMDP LKLSYQGRLHASQNNRLPLQAVLSALYYDRLKLRSGDEGGGGWDAYGNGVMRSSAAGSAR KQAKEEASLARENEALRSELARMRAYVSGMQQQSKGSSSSRGKKGSWLRTLSRLNPFKAG IWGKDTSGIVDGKTDAMNSVKSKRRRFSIS

Transcript Sequence

Transcript ID	Os12t0117400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:861211:863519:-1 gene:Os12g0117400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RPT2-like protein. (Os12t0117400-01)
Sequence	AGATCGCAGGAAATCGTATCTGCCTGCTTTTCGAGAGCTTAACAAGGGAGGGAGAGCTCC TTAATTGCCACGTCCCGGCCTTGCTCTTGATGCAAGCTAAGCTTCCACTTCCAACGGGGA CATCTCTTCTCTTGCACCTTCCTCTGCTCCTGCTTCTGCTTCCATGGATCGGACCAGCCA GTGGGTCTCGTCGCCAGACATACCCGCCGATCTTCTCATCCGGATCGCCGACGACGTCTT CCCTCTCCTTAAGGGGGTGATGGTGCCCAAGTGCGGCTACATCCGCAAGGCCGTCGCGGC GGCGCGCGGTGGCGCCACGGCCACCGTCGACCTCGACCTCTCCGCGCTGCCCGGCGGCGC CGACGCCTTCGACAAGGCTGCGCGCTACTGCTACGGCGCCAACTTCGAGATATCCGTGCG CAACGCGGCCGCGCTCCTCTGCGCCGCCGCCTTCCTCGACATGCACCCAACGGACGGCGG CCTGGCGCGCCGCGTCGAGGAGTTCCTGGCCAAGGTCGGCCTCCGCACGCTGCCCGGCGC CGTCGCCGTGCTGCGCTACTGCGAGGGGCTCCTCCCGGCCGCCGAGGAGATCGGCGTCGT GCAGCGATCAGCTGACGCTATCGCGCTCAGGATCTGTAACGAGGTGCTGTTCCCGACGAG GTCGCCGCCCGAGTGGTGGACGGCGGAGCTCGCGGCCCTCTCGCCGGCGTCGTTCCACAA GGTCATCACGGCGCTGCGCTGCCGCCGCGCGGAGCCCGAGGTGCTTGTCGCTGCAGCCAC CGCATACGCTGAGCTCTTGCTGGCCGAAGTGCTCGCCGCCGACGGCCATGCTGCTGATCA CTCCGGGATGCACCGCGCGCTTGTCGAGTCCGTGGTTGCCGTGCTCCCTTCCACGGACGA CGCGCCCCTCCCCGCCGCGTTCCTCTGCCGCCTCCTCCATGTCGCCATCACCATCTGCGC ATCCGCCAAGACGTGCCGTGACCTGGAGCTCCGCGTGGCGGCGGTGCTCGACCAGGCCAC CGCGGGCGACCTGCTGACCGTCGCGCTCGACAGCGCCGGTGAGCGCGTCCAGAACGTCGA CACCGTGCGCCGCATCATCACCGCCTTCGTGGAGCGCGACTCGGCGGCGTCATCGGGCGG CGCGAACGGCCGGAGCCGGAGGGCGTCCCTGAGCGGAGCCGGGGCGCTGCAGGGCGGCGG TGGCGCGATGCAGACGGTGGCGAAGACCGTGGACGAGGTCGCGGCGGAGATCGCGACGGA GGAGTCGCTGCCGATCTCCAAGTTCGTGGGGCTCGCCGGCGCGGTGCCGAAGGAGGCGCG CGCGACGCACGACTGCCTGTACCGCGCCGTCGACATCTACCTGAAGGCGCACCCGGCGCT GGAGGAGATGGAGAGGGAGAAGGTGTGCAGCGTGATGGACCCGCTGAAGCTGTCGTACCA GGGTCGCCTCCACGCGTCACAGAACAATCGGCTCCCGCTGCAGGCCGTGCTGAGCGCGCT CTACTACGACCGGCTCAAGCTCCGCAGCGGAGACGAGGGCGGCGGCGGGTGGGACGCGTA TGGGAATGGCGTGATGAGGTCGTCGGCGGCGGGGTCGGCGAGGAAGCAGGCGAAGGAGGA GGCGTCGCTGGCGAGGGAGAACGAGGCGCTGCGGTCGGAGCTGGCGCGGATGCGGGCGTA CGTGTCGGGGATGCAGCAGCAGAGCAAGGGGTCGTCGTCGTCGAGGGGGAAGAAGGGCTC GTGGTTGCGGACGTTGAGCCGGCTGAACCCGTTCAAGGCCGGCATCTGGGGCAAGGACAC GTCGGGCATCGTCGACGGGAAGACGGACGCCATGAATTCCGTCAAGTCCAAGAGGAGGAG GTTCTCCATTAGCTAGGCTAGCTTAGTGTTGAGATGATCCATGTCATCTCGTGCTAGCTA CATATATGCGTTGTCAATGACTGTATATTGATTGATTGGTTATTCGCAAGAAACATGACT GTTCTTGTGTAGTCT