Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0116000-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:783597:788103:-1 gene:Os12g0116000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to PV72. (Os12t0116000-01);Similar to predicted protein. (Os12t0116000-02)
Sequence	ATGGAGCCATGGACACGTTGCTCATGCTGCTTAACTGAATCAGGTTCCCTTCCCTCTGCT TGCTTCACGAACTCGCGGAAATCCCGTCCCCTCCCAAAATCTCACCAACGAGTCCACCCC AAATCCATCCACGAATCTCTTCCTCACTCCAACTGCCTCCCTCCGCCGTCAAAATCCAAT CTTTCCTCTCACCTCCGCCGCTTTCGGCACGCCCCTTCAACCCCAAGATCGATACTCTCT CCACCAATCCGATCCAATCCGCAGCTGGGTTCCACGAATTGCAAAGGTCTAGGCGCGGAT TGGAGCATGGGGCTCCGATCCCCCAACTCGATGCTGTGGCTAGTACTACTGGTGTGGGCG GCGCTGCTGTGCGGTAGCTGCCATGGGAGGTTCGTGGTGGAGAAGAACAGCCTCAAGGTG ACGTCGCCCAGCGACATGAAGGGCACCTACGAGTGCGCCATTGGCAACTTCGGCGTGCCC CAGTACGGCGGCACCATGGTCGGCGTCGTCGCCTACCCCAAGGCCAACAAGAAGGCCTGC AAGAGCTTCGACGATTTTGACATCTCCTACAAGGCCAAACCGGGCTCACTCCCCACCTTC CTCCTCGTCGATAGGGGAGATTGCTTTTTCACAAAGAAGGCATGGAATGCACAAAACGCA GGAGCAGCAGCCATCCTTGTTGCTGATGACAAGACTGAACCCCTGATTACAATGGACACG CCTGAAGAGAGTGGAAATACAGACTATTTAGAGAATATCACCATTCCTTCTGCGCTGATA ACCAAGAGCTTTGGGGACAAGCTCAAGAAAGCAATTGATAATGGTGACATGGTTAATGTG AATTTGGATTGGAGGGAGTCCCTGCCTCACCCTGATGAGCGTGTTGAGTACGAATTTTGG ACTAACAGTAATGATGAGTGTGGCCCTAAATGTGATAGCCAGATTGATTTTGTCAAGAGC TTCAAAGGAGCAGCACAGGTACTTGAGAAGAAGGGATACACACAGTTCACTCCTCATTAC ATTACCTGGTATTGCCCAGATTCCTTCATTCTAAGCAAGCAGTGCAAGTCCCAGTGTATC AACCATGGGAGATATTGTGCACCTGACCCGGAACAGGATTTCAGCAAAGGGTATGATGGG AAAGATGTGGTAGTCCAGAATTTACGTCAAGTCTGTGTTTATAAAGTTGCTAAGGAGCAT GGAAAACCTTGGCTGTGGTGGGACTACGTGACAGATTTTGCAATCCGGTGCCCAATGAAG GAAAAGAAGTACACCAAGGAATGCGCTGATGGAGTTATCAAGTCACTTGGTCTTGATCAC AAAGCCATAGATAAGTGCATTGCTGATCCAGATGCTGATAAAGAAAATCCTGTGCTGAAA GCTGAACAGGATGCACAGATTGGCAAGGGCTCTCGTGGTGATGTTACCATCTTACCGACT CTTGTAATCAACAATAGACAATACAGAGGGAAACTTGATAAAGGAGCGGTTCTTAAGGCA ATTTGTGCTGGTTTTCGAGAAACCACTGAACCAGCTGTTTGCTTGAGTGAAGATATACAA ACAAATGAGTGCTTGGAGAACAATGGTGGCTGTTGGCAAGACAAGGCTGCTAACATCTCT GCATGCAAGGACACTTTTCGTGGAAGAGTTTGTGAATGTCCAGTTGTGAAAGGTGTTAAA TTTGTTGGTGATGGCTACACTCACTGTGAAGCTTCGGGATCTGGCCATTGTGAAATTAAC AATGGAGGGTGCTGGAAGGATTCCAGGCATGGCCGGACATATTCTGCCTGCACGAATGAT GGTTGTAAATGTCCGGATGGGTTCAAAGGTGATGGAGTCCACAAATGCGAAGATATTGAT GAATGCAAGGAAAGGACTGCATGCCAGTGCAAGGAATGTAAATGCAAGAACACATGGGGA AGCTATGAGTGCGGTTGCAGTGGCGGCTTGCTTTATATGAAGGAGCATGATACATGCATA AGCAAAAATGCAGCAACAGAGGTAGGATGGAACTTCTTGTGGGTGATCTTCTTTGGCCTA GTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGGAGGTACATGGAT TCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTGGACAACCAAGGAGATGTTCCC AATCATTCTCACCATATCGAGCTATGA

Peptide Sequence

PEP ID	Os12t0116000-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:783597:788103:-1 gene:Os12g0116000 transcript:Os12t0116000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to PV72. (Os12t0116000-01);Similar to predicted protein. (Os12t0116000-02)
Sequence	MEPWTRCSCCLTESGSLPSACFTNSRKSRPLPKSHQRVHPKSIHESLPHSNCLPPPSKSN LSSHLRRFRHAPSTPRSILSPPIRSNPQLGSTNCKGLGADWSMGLRSPNSMLWLVLLVWA ALLCGSCHGRFVVEKNSLKVTSPSDMKGTYECAIGNFGVPQYGGTMVGVVAYPKANKKAC KSFDDFDISYKAKPGSLPTFLLVDRGDCFFTKKAWNAQNAGAAAILVADDKTEPLITMDT PEESGNTDYLENITIPSALITKSFGDKLKKAIDNGDMVNVNLDWRESLPHPDERVEYEFW TNSNDECGPKCDSQIDFVKSFKGAAQVLEKKGYTQFTPHYITWYCPDSFILSKQCKSQCI NHGRYCAPDPEQDFSKGYDGKDVVVQNLRQVCVYKVAKEHGKPWLWWDYVTDFAIRCPMK EKKYTKECADGVIKSLGLDHKAIDKCIADPDADKENPVLKAEQDAQIGKGSRGDVTILPT LVINNRQYRGKLDKGAVLKAICAGFRETTEPAVCLSEDIQTNECLENNGGCWQDKAANIS ACKDTFRGRVCECPVVKGVKFVGDGYTHCEASGSGHCEINNGGCWKDSRHGRTYSACTND GCKCPDGFKGDGVHKCEDIDECKERTACQCKECKCKNTWGSYECGCSGGLLYMKEHDTCI SKNAATEVGWNFLWVIFFGLVVAGIAGYAVYKYRIRRYMDSEIRAIMAQYMPLDNQGDVP NHSHHIEL

Transcript Sequence

Transcript ID	Os12t0116000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:783597:788103:-1 gene:Os12g0116000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to PV72. (Os12t0116000-01);Similar to predicted protein. (Os12t0116000-02)
Sequence	ATGGAGCCATGGACACGTTGCTCATGCTGCTTAACTGAATCAGGTTCCCTTCCCTCTGCT TGCTTCACGAACTCGCGGAAATCCCGTCCCCTCCCAAAATCTCACCAACGAGTCCACCCC AAATCCATCCACGAATCTCTTCCTCACTCCAACTGCCTCCCTCCGCCGTCAAAATCCAAT CTTTCCTCTCACCTCCGCCGCTTTCGGCACGCCCCTTCAACCCCAAGATCGATACTCTCT CCACCAATCCGATCCAATCCGCAGCTGGGTTCCACGAATTGCAAAGGTCTAGGCGCGGAT TGGAGCATGGGGCTCCGATCCCCCAACTCGATGCTGTGGCTAGTACTACTGGTGTGGGCG GCGCTGCTGTGCGGTAGCTGCCATGGGAGGTTCGTGGTGGAGAAGAACAGCCTCAAGGTG ACGTCGCCCAGCGACATGAAGGGCACCTACGAGTGCGCCATTGGCAACTTCGGCGTGCCC CAGTACGGCGGCACCATGGTCGGCGTCGTCGCCTACCCCAAGGCCAACAAGAAGGCCTGC AAGAGCTTCGACGATTTTGACATCTCCTACAAGGCCAAACCGGGCTCACTCCCCACCTTC CTCCTCGTCGATAGGGGAGATTGCTTTTTCACAAAGAAGGCATGGAATGCACAAAACGCA GGAGCAGCAGCCATCCTTGTTGCTGATGACAAGACTGAACCCCTGATTACAATGGACACG CCTGAAGAGAGTGGAAATACAGACTATTTAGAGAATATCACCATTCCTTCTGCGCTGATA ACCAAGAGCTTTGGGGACAAGCTCAAGAAAGCAATTGATAATGGTGACATGGTTAATGTG AATTTGGATTGGAGGGAGTCCCTGCCTCACCCTGATGAGCGTGTTGAGTACGAATTTTGG ACTAACAGTAATGATGAGTGTGGCCCTAAATGTGATAGCCAGATTGATTTTGTCAAGAGC TTCAAAGGAGCAGCACAGGTACTTGAGAAGAAGGGATACACACAGTTCACTCCTCATTAC ATTACCTGGTATTGCCCAGATTCCTTCATTCTAAGCAAGCAGTGCAAGTCCCAGTGTATC AACCATGGGAGATATTGTGCACCTGACCCGGAACAGGATTTCAGCAAAGGGTATGATGGG AAAGATGTGGTAGTCCAGAATTTACGTCAAGTCTGTGTTTATAAAGTTGCTAAGGAGCAT GGAAAACCTTGGCTGTGGTGGGACTACGTGACAGATTTTGCAATCCGGTGCCCAATGAAG GAAAAGAAGTACACCAAGGAATGCGCTGATGGAGTTATCAAGTCACTTGGTCTTGATCAC AAAGCCATAGATAAGTGCATTGCTGATCCAGATGCTGATAAAGAAAATCCTGTGCTGAAA GCTGAACAGGATGCACAGATTGGCAAGGGCTCTCGTGGTGATGTTACCATCTTACCGACT CTTGTAATCAACAATAGACAATACAGAGGGAAACTTGATAAAGGAGCGGTTCTTAAGGCA ATTTGTGCTGGTTTTCGAGAAACCACTGAACCAGCTGTTTGCTTGAGTGAAGATATACAA ACAAATGAGTGCTTGGAGAACAATGGTGGCTGTTGGCAAGACAAGGCTGCTAACATCTCT GCATGCAAGGACACTTTTCGTGGAAGAGTTTGTGAATGTCCAGTTGTGAAAGGTGTTAAA TTTGTTGGTGATGGCTACACTCACTGTGAAGCTTCGGGATCTGGCCATTGTGAAATTAAC AATGGAGGGTGCTGGAAGGATTCCAGGCATGGCCGGACATATTCTGCCTGCACGAATGAT GGTTGTAAATGTCCGGATGGGTTCAAAGGTGATGGAGTCCACAAATGCGAAGATATTGAT GAATGCAAGGAAAGGACTGCATGCCAGTGCAAGGAATGTAAATGCAAGAACACATGGGGA AGCTATGAGTGCGGTTGCAGTGGCGGCTTGCTTTATATGAAGGAGCATGATACATGCATA AGCAAAAATGCAGCAACAGAGGTAGGATGGAACTTCTTGTGGGTGATCTTCTTTGGCCTA GTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGGAGGTACATGGAT TCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTGGACAACCAAGGAGATGTTCCC AATCATTCTCACCATATCGAGCTATGAAAAGAGTGAGGATAGCATGCAACTTCCCCCCAT GTTGCCCAAATGGGATGAGAAGAGGTGAACAACTCCTGGAGATCATGACACAGCCTGACG ATATGTGTAGTAGTATCACTCTGACGATCTTATGTTTAGCAAATTTAGCCCATGTAAATT TCTGGATTATCCTGTGGCCGCATAATTTCAATCGTACCTGGCTGCTTTGCTCCCATATAG CGCTGGGGAAATATGGAGATTGCAAAATTAGGCAAGTTTGTGATCTCGAGGAAGAACACT AGTATGGCATTTCCCACCAAAAAAGACTAGTTTGGAAAGCATGAATTTTGTATAGAATTT TCGTGTGAATCAGTTTTGCTTGGTTCTTGCGG