Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0115900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:776617:779641:1 gene:Os12g0115900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Translation elongation factor P domain containing protein. (Os12t0115900-01)
Sequence

ATGGCTTCTCTCCGCCACGGCCACCTCTCTCCCTCCGGCGCCACTGCACCACCCTCCTCC
TTCGCCCAACTCCGCCGCCCTTCCTCCTGCCTCGCCGGACCACGACCTCTCCGCTCTCGT
CTCACCCGGGTGTACGCGCTTTCCAGCAACGATATCAGGGTGGGCTCCAACCTCGAGGTC
GACGGAGCTCCCTGGAAGGTTCTTGAATTTCTCCATGTCAAGCCTGGAAAAGGTGCTGCT
TTTGTAAGGACAAAAATGCGTAATTATATCACTGGCAACACAGTTGACAAAACCTTTCGA
GCTGGAAGTACGATCCCAGAGGCATCCATTTCAAAGGAAACTAAGCAATTTACCTACAAG
GATGGAGCCCAGTTTGTGTTCATGGATCTGACTACCTTTGAAGAAAGTCGCTTAAATGAG
TCAGATGTTGGCGACAGGCAGAAATGGTTGAAAGAAGGAATGGACTGCAATTTGTTATAC
TGGAATGGACGGATCATTGATTTTGATCTCCCCATCACCGTTAGGCTGACTGTAACTGAT
ACTGACCCAGGGCAAGGTGACAGTGCACAAGGAGGAACAAAACCAGCAACCGTGGAAACA
GGAGCTGTTGTCACAGTGCCCTCGTTTGTGAACGTAGGCGATGATATCCTGATTGATTCA
AGAACTGGCCAGTATATGAACAGAGCATAG

Peptide Sequence

PEP ID

Os12t0115900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:776617:779641:1 gene:Os12g0115900 transcript:Os12t0115900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Translation elongation factor P domain containing protein. (Os12t0115900-01)
Sequence

MASLRHGHLSPSGATAPPSSFAQLRRPSSCLAGPRPLRSRLTRVYALSSNDIRVGSNLEV
DGAPWKVLEFLHVKPGKGAAFVRTKMRNYITGNTVDKTFRAGSTIPEASISKETKQFTYK
DGAQFVFMDLTTFEESRLNESDVGDRQKWLKEGMDCNLLYWNGRIIDFDLPITVRLTVTD
TDPGQGDSAQGGTKPATVETGAVVTVPSFVNVGDDILIDSRTGQYMNRA

Transcript Sequence

Transcript ID

Os12t0115900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:776617:779641:1 gene:Os12g0115900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Translation elongation factor P domain containing protein. (Os12t0115900-01)
Sequence

ATCGTCTTCATCGCATCAGTTGAGCTGCCAGCTGAGCTATGGCTTCTCTCCGCCACGGCC
ACCTCTCTCCCTCCGGCGCCACTGCACCACCCTCCTCCTTCGCCCAACTCCGCCGCCCTT
CCTCCTGCCTCGCCGGACCACGACCTCTCCGCTCTCGTCTCACCCGGGTGTACGCGCTTT
CCAGCAACGATATCAGGGTGGGCTCCAACCTCGAGGTCGACGGAGCTCCCTGGAAGGTTC
TTGAATTTCTCCATGTCAAGCCTGGAAAAGGTGCTGCTTTTGTAAGGACAAAAATGCGTA
ATTATATCACTGGCAACACAGTTGACAAAACCTTTCGAGCTGGAAGTACGATCCCAGAGG
CATCCATTTCAAAGGAAACTAAGCAATTTACCTACAAGGATGGAGCCCAGTTTGTGTTCA
TGGATCTGACTACCTTTGAAGAAAGTCGCTTAAATGAGTCAGATGTTGGCGACAGGCAGA
AATGGTTGAAAGAAGGAATGGACTGCAATTTGTTATACTGGAATGGACGGATCATTGATT
TTGATCTCCCCATCACCGTTAGGCTGACTGTAACTGATACTGACCCAGGGCAAGGTGACA
GTGCACAAGGAGGAACAAAACCAGCAACCGTGGAAACAGGAGCTGTTGTCACAGTGCCCT
CGTTTGTGAACGTAGGCGATGATATCCTGATTGATTCAAGAACTGGCCAGTATATGAACA
GAGCATAGAAGAGATGAGAGACTAGACATCAACAGAGCATTAGTTTTTGTCTCCCCATTT
TTGGCCCATTCCCTCACCTCACCCAGGTTTGACTGTATTGTTTACAGCATTTGAACCCTC
GACAGGATCAAAATGCTTTCTCAAATTTTTGTACTGCATATGTGCGTACATATTTCACCA
GAGCAGATGATTAATGAGCC