Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0110100-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:555086:558636:-1 gene:Os12g0110100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Esterase/lipase/thioesterase domain containing protein. (Os12t0110100-01)
Sequence

ATGGATAAAGAGCCAACCATGGAGGATTTGCCTTCAACGCTGGGGCAGCCTTCTACTTCT
GCATCATCGGTTGATGCTAGATATTCAGCCGACAGGACTGAAGATTCACAGCTCTTCCTC
TCCGTCCCAGCTTTAAACCAAGCTGCGTCTTATCTGGCCCAGACGGCCTCATATCTTACC
CAGTGCCTCCCTGTATCTGGTTACACAGCTATTTCTGAGGAAGGGCAAGAACTAGCAACT
CTGCCACCTGCGTCAACTGTTGGTGGATCCTCTTTTCAGGCTTCTTCCGAACAGTCAGCA
GACTCATCTCCTGGTGAAATTGATAATACTGGAAGCTCATCTCAAGAAATCACAGAACAG
ATGGCACCTTTGCGCGTCTTCCAGAATGGGGCTTCACTGTTTCAAGGTCTTGTAGAACGT
GCTCGGAAAACTGTTCGTGGCTCAGCCAATGATATTGGATGGCTTCAGCAGGATCAAAGC
TTACCTCCAACTGAGGACGGAACTGCCAGATTCTTGGAAATTCTTGATGCTGTGAGAAAA
AACGAACACAAGCTGCCTGATTCGATGGTCTATCTGTTGGTTCCAGGTTTGTTTAGTAAC
CATGGGCCTCTTTACTTTGTCAAGACAAAATCATATTTCTCCAAGATGGGTCTGGCTTGT
CACATTGCCAAGATTCACAGTGAGTCTTCAGTAAGTAAAAATGCAAGGGAGATAAAGGAA
TATATAGAAGAAATATACTGGGGATCGAAGAAGCGGGTGCTACTTCTCGGCCATAGCAAG
GGTGGTGTAGATGCAGCAGCAGCCCTCTCCCTTTACTGGCCACAACTGAAAGACAAGGTC
GCAGGTTTGGCTTTAGCTCAAAGCCCATATGGAGGAAGCCCGGTTGCTTCAGATATCTTG
CGAGAAGGCCAGCTTGGTGACTATGTCAGGTTACGTAAACTCATGGAGATTTTGGTATCA
AAAGTCCTTAAGGGTGATCTTCAGGCTCTGGAAGACCTGACATATGAGAGGAGGAAAGAA
TTCCTGCGGCAGAACCCATTGCCTCCTGAGGTTCCCATTGTCTCGTTCCACACAGAGGCT
AGCATCACTCCCAGTGTGCTTACAGCCCTCTCTCATGTTGCACACTTGGAGCTCCCAGCT
GCAGCTGATGGGAATCCTACTAGGATCCCAGTTGTAATGCCACTTTCAGCTGCAATGGCA
GCATGCTCACAACTTCTGGTGGCAAGGTATGGTGAGAAGAGTGATGGTCTTGTGACAAGG
AAGGATGCTGAAGTTCCTGGATCAGTAGTGGTCCGGCCAGAGCGGAAGTTGGACCATGCA
TGGATGGTTTATTCCTCACTCAATGAGGAACCTAGGGATCAGGCAGACACATCGCAGGTA
TGTGAAGCCCTGCTGACTCTGCTTGTTGAGGTTGCGCAGAAACGGAGGCATGAGATGGCT
ATGAAAGATGAATAA

Peptide Sequence

PEP ID

Os12t0110100-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:555086:558636:-1 gene:Os12g0110100 transcript:Os12t0110100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Esterase/lipase/thioesterase domain containing protein. (Os12t0110100-01)
Sequence

MDKEPTMEDLPSTLGQPSTSASSVDARYSADRTEDSQLFLSVPALNQAASYLAQTASYLT
QCLPVSGYTAISEEGQELATLPPASTVGGSSFQASSEQSADSSPGEIDNTGSSSQEITEQ
MAPLRVFQNGASLFQGLVERARKTVRGSANDIGWLQQDQSLPPTEDGTARFLEILDAVRK
NEHKLPDSMVYLLVPGLFSNHGPLYFVKTKSYFSKMGLACHIAKIHSESSVSKNAREIKE
YIEEIYWGSKKRVLLLGHSKGGVDAAAALSLYWPQLKDKVAGLALAQSPYGGSPVASDIL
REGQLGDYVRLRKLMEILVSKVLKGDLQALEDLTYERRKEFLRQNPLPPEVPIVSFHTEA
SITPSVLTALSHVAHLELPAAADGNPTRIPVVMPLSAAMAACSQLLVARYGEKSDGLVTR
KDAEVPGSVVVRPERKLDHAWMVYSSLNEEPRDQADTSQVCEALLTLLVEVAQKRRHEMA
MKDE

Transcript Sequence

Transcript ID

Os12t0110100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:555086:558636:-1 gene:Os12g0110100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Esterase/lipase/thioesterase domain containing protein. (Os12t0110100-01)
Sequence

GGAAGACCAGAAAAGTCTGGACTCTGGAAGAAAGAAAGCGGCGCGGCGGCCGGCGGGGCA
CGGCACGGTGGACATCACAGGGAAGGAGAAACGCTTCTTCCCGTTGTTCCCAAATCCCAA
TCCGTGGGAGCGCAGTCGCAGGCCAACGATCGAGTGGAGTCGAGCACAAGGAAAAGGAAC
GCATCGCCATCGCCATCGCCATCGCCTCCCTCCCTGTCCTGTCCAGCTCACCTCCAAACC
CTCCATCTTCTTGATTTACTATACTTGATTCCGTACAACCGCTCATGGATAAAGAGCCAA
CCATGGAGGATTTGCCTTCAACGCTGGGGCAGCCTTCTACTTCTGCATCATCGGTTGATG
CTAGATATTCAGCCGACAGGACTGAAGATTCACAGCTCTTCCTCTCCGTCCCAGCTTTAA
ACCAAGCTGCGTCTTATCTGGCCCAGACGGCCTCATATCTTACCCAGTGCCTCCCTGTAT
CTGGTTACACAGCTATTTCTGAGGAAGGGCAAGAACTAGCAACTCTGCCACCTGCGTCAA
CTGTTGGTGGATCCTCTTTTCAGGCTTCTTCCGAACAGTCAGCAGACTCATCTCCTGGTG
AAATTGATAATACTGGAAGCTCATCTCAAGAAATCACAGAACAGATGGCACCTTTGCGCG
TCTTCCAGAATGGGGCTTCACTGTTTCAAGGTCTTGTAGAACGTGCTCGGAAAACTGTTC
GTGGCTCAGCCAATGATATTGGATGGCTTCAGCAGGATCAAAGCTTACCTCCAACTGAGG
ACGGAACTGCCAGATTCTTGGAAATTCTTGATGCTGTGAGAAAAAACGAACACAAGCTGC
CTGATTCGATGGTCTATCTGTTGGTTCCAGGTTTGTTTAGTAACCATGGGCCTCTTTACT
TTGTCAAGACAAAATCATATTTCTCCAAGATGGGTCTGGCTTGTCACATTGCCAAGATTC
ACAGTGAGTCTTCAGTAAGTAAAAATGCAAGGGAGATAAAGGAATATATAGAAGAAATAT
ACTGGGGATCGAAGAAGCGGGTGCTACTTCTCGGCCATAGCAAGGGTGGTGTAGATGCAG
CAGCAGCCCTCTCCCTTTACTGGCCACAACTGAAAGACAAGGTCGCAGGTTTGGCTTTAG
CTCAAAGCCCATATGGAGGAAGCCCGGTTGCTTCAGATATCTTGCGAGAAGGCCAGCTTG
GTGACTATGTCAGGTTACGTAAACTCATGGAGATTTTGGTATCAAAAGTCCTTAAGGGTG
ATCTTCAGGCTCTGGAAGACCTGACATATGAGAGGAGGAAAGAATTCCTGCGGCAGAACC
CATTGCCTCCTGAGGTTCCCATTGTCTCGTTCCACACAGAGGCTAGCATCACTCCCAGTG
TGCTTACAGCCCTCTCTCATGTTGCACACTTGGAGCTCCCAGCTGCAGCTGATGGGAATC
CTACTAGGATCCCAGTTGTAATGCCACTTTCAGCTGCAATGGCAGCATGCTCACAACTTC
TGGTGGCAAGGTATGGTGAGAAGAGTGATGGTCTTGTGACAAGGAAGGATGCTGAAGTTC
CTGGATCAGTAGTGGTCCGGCCAGAGCGGAAGTTGGACCATGCATGGATGGTTTATTCCT
CACTCAATGAGGAACCTAGGGATCAGGCAGACACATCGCAGGTATGTGAAGCCCTGCTGA
CTCTGCTTGTTGAGGTTGCGCAGAAACGGAGGCATGAGATGGCTATGAAAGATGAATAAA
AATGTTAGTGTTGCTCTGACAGATATTTGTAATCGTAGACTTCTGTTGTTGAATGTACTG
TCCAAACTTATGCTGAAACTGCTTCTGGGCCACTTTTTTTTGTTTGGTTTACAGAAGCTT
CATATATCAACTGAATCTGAAAGGTGAAAAGGGCAACAATGGAAGCGTTTCTCTTTTTTT
TTTTAATTTACCATAAGGAAATTGTATGATTTGGTCGTTTCTCATGTCTCATGGTATTCC
CCTTCCCAATCAGGTGATTCGTCTACTAGGTCTGAATTTGATTATGGTTGTAAGTGTATT
TAGGCATGATTCCATGAGTCATGGGTATGCAACAGCTTGAGATCGCAATGTATAGAACTC
TTTATATCCTAGTCTGTTGCAGATTCTTC