Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0105700-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:302239:305271:-1 gene:Os12g0105700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Bacterial surface antigen (D15) family protein. (Os12t0105700-01)
Sequence	ATGGCCACCGCATCCTCTCCCGCTTCCGTCCAAGATTACCCCGACCTGCAAGAGGATGAT GACGACGACTTCCAAGACGACGACGACGACGACCTCGATGACGAAGACGAGGAGGACGAT GACCAAGAACCCTCCCCGTCCCCGTCCGACGAGGCTCGCCTCGAGTCCGTCCTGCGCCGC CTCACCGCGGAGGAGGTCCGGATCCGGGTGCACGATGTGGAGATCCGGGGCTGCTGCCGC ACGCGCCGCGCCGCGGTGGAGGCGGCGGTCGGCTCGGACCTGCCGCGTGCCGCCACCGTC AGAGACCTCGTGCGCGCTGCAGCCGCCGCCGCCGATCGGATCCGTCGCCTCGGCGCCTTC GACACCGTGTCCATCACCCTCGACGCCGCGCCGCCAGGGATCCCCGGTAACGCTGCCGTC ATCGTCCTTGTTGACGTCGCCGAGGCTCGTGGCCGCGCCGCCGGCGAACTCGGCATCTTC GCTAACAAAGGGACTAGATCATGTTCGGTTCAAGGTTCAGTGAAGTTGAAGAACCTATTT GGATATTGTGAGACATGGGATGCATCCGGTGATCTTGGATTAGATCAGACAGTGGAGCTA AGTACTGGAGTGGCAATACCAAGAATTGGAGCAATACCTACTCCACTGGTAGCTCGAATA TCATTTCTCTCTGAGGACTGGTTGAAGTCCTCACTCAAAGAACACATGATGGGTGTTTCT GTTGGTTTGCTCTCCACCATGAACCATAACCTCGCTTACAATCTGTCATGGCGAACTATA ACAGACCGAGCACTGATGTCATCCAATTCCATAAGGGGGCAGTTAGGGCATAGCCTTTTG TCCTCTATTAAATATGCATACAAGGTTGACCAGAGAGATTCAAGAATTCGACCGACACGA GGATATGCTTATCTATTTTCTTCTCAAGTTGGAGGCCTTGCACCAGAGAGCAAAGATGCA CGTTACATTAGACAGGAAATTGATCTTCGAGTGGCTTTACCGCTGGGTGTGTTGAATGGC GCCGTTAATGCTGGAGTGGCTGCTGGGATCATCCACCCATTGGCAAGGGGATCGACGGGC TCTATATCCCCACTTTCAGAGCAGTTCTACTTGGGTGGCAATAGGTCTCTTATGTGCCGC TTGGGTGGACCATCATCACTATTAGGTTTCAAGAAAAGAGGGCTGGGGACAGACTTGCGA AGCAGTACCCCAGAGAATTCTGAAAATGTTGCTTCCACTTCTCCTGAGCTAAGTGCACGG GGAGGTGACATTGCGGTCACAGCCTTTGCTGATCTGTCATTTGATATACCTCTGAAGCCT CTCAGGGAGCTGGGAATCCATGGCCATGCATTTGTCTCAGCTGGAAATCTTGCCAAACTA ACAGAGCCTGATCTCAGGAAATTCCCTCTTGCTGAGTTTCTACAAACATTCAGGAGTTCT GCAGGATTTGGTGTAGTTGTGCCAACAAGATTATTTCGCATAGAGGTGAATTACTGCCAC ATCCTAAAACAGTTTGATTATGACCTCGGGAAGGCGGGGATACAGTTGAACTTTTCTTCG CCCTAA

Peptide Sequence

PEP ID	Os12t0105700-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:302239:305271:-1 gene:Os12g0105700 transcript:Os12t0105700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Bacterial surface antigen (D15) family protein. (Os12t0105700-01)
Sequence	MATASSPASVQDYPDLQEDDDDDFQDDDDDDLDDEDEEDDDQEPSPSPSDEARLESVLRR LTAEEVRIRVHDVEIRGCCRTRRAAVEAAVGSDLPRAATVRDLVRAAAAAADRIRRLGAF DTVSITLDAAPPGIPGNAAVIVLVDVAEARGRAAGELGIFANKGTRSCSVQGSVKLKNLF GYCETWDASGDLGLDQTVELSTGVAIPRIGAIPTPLVARISFLSEDWLKSSLKEHMMGVS VGLLSTMNHNLAYNLSWRTITDRALMSSNSIRGQLGHSLLSSIKYAYKVDQRDSRIRPTR GYAYLFSSQVGGLAPESKDARYIRQEIDLRVALPLGVLNGAVNAGVAAGIIHPLARGSTG SISPLSEQFYLGGNRSLMCRLGGPSSLLGFKKRGLGTDLRSSTPENSENVASTSPELSAR GGDIAVTAFADLSFDIPLKPLRELGIHGHAFVSAGNLAKLTEPDLRKFPLAEFLQTFRSS AGFGVVVPTRLFRIEVNYCHILKQFDYDLGKAGIQLNFSSP

Transcript Sequence

Transcript ID	Os12t0105700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:302239:305271:-1 gene:Os12g0105700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Bacterial surface antigen (D15) family protein. (Os12t0105700-01)
Sequence	AGTGTTATTCGTTGCTTGTGAAAAGGCATCCTTGAGTTTGAGTGAGTAGAGTCGTCGTCT TCGTCTCCCAATTCAGTTGAGATCCCCTTCCGATCGTCCAACATTCCAATGGCCACCGCA TCCTCTCCCGCTTCCGTCCAAGATTACCCCGACCTGCAAGAGGATGATGACGACGACTTC CAAGACGACGACGACGACGACCTCGATGACGAAGACGAGGAGGACGATGACCAAGAACCC TCCCCGTCCCCGTCCGACGAGGCTCGCCTCGAGTCCGTCCTGCGCCGCCTCACCGCGGAG GAGGTCCGGATCCGGGTGCACGATGTGGAGATCCGGGGCTGCTGCCGCACGCGCCGCGCC GCGGTGGAGGCGGCGGTCGGCTCGGACCTGCCGCGTGCCGCCACCGTCAGAGACCTCGTG CGCGCTGCAGCCGCCGCCGCCGATCGGATCCGTCGCCTCGGCGCCTTCGACACCGTGTCC ATCACCCTCGACGCCGCGCCGCCAGGGATCCCCGGTAACGCTGCCGTCATCGTCCTTGTT GACGTCGCCGAGGCTCGTGGCCGCGCCGCCGGCGAACTCGGCATCTTCGCTAACAAAGGG ACTAGATCATGTTCGGTTCAAGGTTCAGTGAAGTTGAAGAACCTATTTGGATATTGTGAG ACATGGGATGCATCCGGTGATCTTGGATTAGATCAGACAGTGGAGCTAAGTACTGGAGTG GCAATACCAAGAATTGGAGCAATACCTACTCCACTGGTAGCTCGAATATCATTTCTCTCT GAGGACTGGTTGAAGTCCTCACTCAAAGAACACATGATGGGTGTTTCTGTTGGTTTGCTC TCCACCATGAACCATAACCTCGCTTACAATCTGTCATGGCGAACTATAACAGACCGAGCA CTGATGTCATCCAATTCCATAAGGGGGCAGTTAGGGCATAGCCTTTTGTCCTCTATTAAA TATGCATACAAGGTTGACCAGAGAGATTCAAGAATTCGACCGACACGAGGATATGCTTAT CTATTTTCTTCTCAAGTTGGAGGCCTTGCACCAGAGAGCAAAGATGCACGTTACATTAGA CAGGAAATTGATCTTCGAGTGGCTTTACCGCTGGGTGTGTTGAATGGCGCCGTTAATGCT GGAGTGGCTGCTGGGATCATCCACCCATTGGCAAGGGGATCGACGGGCTCTATATCCCCA CTTTCAGAGCAGTTCTACTTGGGTGGCAATAGGTCTCTTATGTGCCGCTTGGGTGGACCA TCATCACTATTAGGTTTCAAGAAAAGAGGGCTGGGGACAGACTTGCGAAGCAGTACCCCA GAGAATTCTGAAAATGTTGCTTCCACTTCTCCTGAGCTAAGTGCACGGGGAGGTGACATT GCGGTCACAGCCTTTGCTGATCTGTCATTTGATATACCTCTGAAGCCTCTCAGGGAGCTG GGAATCCATGGCCATGCATTTGTCTCAGCTGGAAATCTTGCCAAACTAACAGAGCCTGAT CTCAGGAAATTCCCTCTTGCTGAGTTTCTACAAACATTCAGGAGTTCTGCAGGATTTGGT GTAGTTGTGCCAACAAGATTATTTCGCATAGAGGTGAATTACTGCCACATCCTAAAACAG TTTGATTATGACCTCGGGAAGGCGGGGATACAGTTGAACTTTTCTTCGCCCTAATTTCTT TCTGCCACAAGATGAATAGCTGTATTTTCCTTTTCCCCTCACTATGACCCTCAGCTCTTG GTCTTTTTCTTCCTCCACAATTAATCTCTCCAGAAAAAAGGGCCCAGAAACTGTGGGTGA TGAATTCTTGTCCTGGTCTATGATGTGATATTGACACCTGTAAAGTTTACAATCAAAACG GAAATGAAAGTCGTGAGAAGCATCAGTTTGCAATGCTTTTCTCCATGC