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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0105500-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:289717:291513:-1 gene:Os12g0105500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphatidate cytidylyltransferase family protein, expressed. (Os12t0105500-01)
Sequence

ATGGAGAGTCAGGTGCTCCGGGACGCCGGCGCCGCCGTGCTCACCGGAGCCACCGCGCTC
GCCGTGCTTCGCTTCTGGGAAGAGGTCGGCAACCGCGCCCTCTTGGACCAGAAACTTTGC
AGGAAACTCGTGCACATTACTGTTGGCTTAGTATACTTCCTCATGTGGCCTTTGTTCAGT
GCGGATGATGTCTATGCTCCATTTCTTGCTTCCATTGTCATTGCATTCAACATCATAAAG
GTTACCTTGATTGGACTTGGTATTGTCAAAGATGATGGTGTCATTAACTCCATGACCAGG
AACGGAGACCCTAGAGAGCTTCTTAAAGGACCACTGTACTACGCTTGTGCTATGACTCTC
GCTACTGTTATTTTCTGGAGGACATCTCCCATTTCAATCGCTGTGATTTGCAACTTGTGT
GCCGGAGACGGTGTAGCTGACATAGCTGGAAGGCAGTTAGGCCGTATAAAGCTTCCTTAC
AACCCTGACAAATCTTACGCTGGATCCATTGCAATGTTCTTAGCTGGTTTCCTTGCATCA
ATCCTGTACATGTGCTACTTCCACCTCTTCGGATTTGTCGAGGAGAGCTGGACCATGGTG
ATTGCCTTTGGCGTGACATCGCTTTCTGCTGCAATTGTGGAGTCGCTCCCTATCAGCACA
CGCTTGGACGACAATCTGACTGTGCCACTCGCCTCTGTCCTCATTGGTGTCCTTGTTTTC
TATTATATTGGGGCCAGAAACCTGTGCTGCATGAGCGCTGACAGCAGCGATATTTCTGCA
CTTGTTCAGAATCAGATGTTCTTGGGCAGGTTCTAG

Peptide Sequence

PEP ID

Os12t0105500-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:289717:291513:-1 gene:Os12g0105500 transcript:Os12t0105500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphatidate cytidylyltransferase family protein, expressed. (Os12t0105500-01)
Sequence

MESQVLRDAGAAVLTGATALAVLRFWEEVGNRALLDQKLCRKLVHITVGLVYFLMWPLFS
ADDVYAPFLASIVIAFNIIKVTLIGLGIVKDDGVINSMTRNGDPRELLKGPLYYACAMTL
ATVIFWRTSPISIAVICNLCAGDGVADIAGRQLGRIKLPYNPDKSYAGSIAMFLAGFLAS
ILYMCYFHLFGFVEESWTMVIAFGVTSLSAAIVESLPISTRLDDNLTVPLASVLIGVLVF
YYIGARNLCCMSADSSDISALVQNQMFLGRF

Transcript Sequence

Transcript ID

Os12t0105500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:289717:291513:-1 gene:Os12g0105500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphatidate cytidylyltransferase family protein, expressed. (Os12t0105500-01)
Sequence

AAGGCGGTAAGAGAAGCATTGATTCACCCATGGAGAGTCAGGTGCTCCGGGACGCCGGCG
CCGCCGTGCTCACCGGAGCCACCGCGCTCGCCGTGCTTCGCTTCTGGGAAGAGGTCGGCA
ACCGCGCCCTCTTGGACCAGAAACTTTGCAGGAAACTCGTGCACATTACTGTTGGCTTAG
TATACTTCCTCATGTGGCCTTTGTTCAGTGCGGATGATGTCTATGCTCCATTTCTTGCTT
CCATTGTCATTGCATTCAACATCATAAAGGTTACCTTGATTGGACTTGGTATTGTCAAAG
ATGATGGTGTCATTAACTCCATGACCAGGAACGGAGACCCTAGAGAGCTTCTTAAAGGAC
CACTGTACTACGCTTGTGCTATGACTCTCGCTACTGTTATTTTCTGGAGGACATCTCCCA
TTTCAATCGCTGTGATTTGCAACTTGTGTGCCGGAGACGGTGTAGCTGACATAGCTGGAA
GGCAGTTAGGCCGTATAAAGCTTCCTTACAACCCTGACAAATCTTACGCTGGATCCATTG
CAATGTTCTTAGCTGGTTTCCTTGCATCAATCCTGTACATGTGCTACTTCCACCTCTTCG
GATTTGTCGAGGAGAGCTGGACCATGGTGATTGCCTTTGGCGTGACATCGCTTTCTGCTG
CAATTGTGGAGTCGCTCCCTATCAGCACACGCTTGGACGACAATCTGACTGTGCCACTCG
CCTCTGTCCTCATTGGTGTCCTTGTTTTCTATTATATTGGGGCCAGAAACCTGTGCTGCA
TGAGCGCTGACAGCAGCGATATTTCTGCACTTGTTCAGAATCAGATGTTCTTGGGCAGGT
TCTAGTGAGTAGCCGCCTTGCAGAGCTCAAAAACAACCGACTTACTAAAATCAGATTCGA
TTAGATGTAACAACGATGGATACAGGCTGCAAGAATCATAATTTTGTGATTGTATCTTGT
GATCAAGGAAAACAAAAAGTATCTGACTGTCTGATATTAGTAAAGCAAAACTCGAGGAGA
GGAAAAACACACCAGATAGCAATCTTCACTTTCAGGTCC