Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0104300-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:220457:225793:1 gene:Os12g0104300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:D53-like description:Clp, N-terminal domain containing protein. (Os12t0104300-01);Hypothetical conserved gene. (Os12t0104300-02)
Sequence	ATGCCCACTCCGGTGGCCGCCGCGAGGCAGTGCCTCTCGCCGGCCGCCGTCCCCGCCCTC GACGCCGCCGTCGCCTCCGCTCGCCGCCGCGCCCACGCCCAGACTACCTCCCTCCACCTC ATCTCCTCCCTCCTCGCCCCGCCCGCACCTCCCCTCCTCCGCGACGCCCTCGCCCGCGCC CGCAGCGCCGCCTACTCCCCACGCGTCCAGCTCAAGGCCCTCGACCTCTGCTTCGCCGTC TCCCTCGACAGGCTCCCCTCCGTCTCCGCCTCCTCCTCCTCTGGCGCCGCCGACGAGCCC CCCGTCTCCAACTCCCTCATGGCCGCCATCAAGCGCTCCCAGGCCAACCAGCGCCGCAAC CCGGACACCTTCCACTTCTACCACCAGGCCGCCACCGCCCAGACCCCCGCCGCCGTCAAG GTCGAGCTCTCCCACCTCGTCCTCGCCATCCTCGATGACCCCGTCGTCAGCCGCGTCTTC GCCGAGGCCGGATTCCGCAGCGGGGACATCAAGCTCGCCATCCTCCGCCCGGCTCCGCCC ATGCCGCTCCTCGGCCGCCTACCCACGCGCACCCGCCCGCCTCCTCTCTTCCTCTGCAGC TTCGCCGCCGCGGACGACGCCGACGTCCCTTCGCCTGCGGGGAACCTCGCGGGCGCGGGG GAGGAGAACTGCCGCCGCATCGCCGAGATCCTCTCCCGCGGCCGCAACCCCATGCTCGTC GGCGTCGGGGCCGCCTCCGCCGCGGACGACTTCGCGGCCGCCTCCCCGTATCGTATCATC CATGTCGACCCCAACACCATCGACCGCTCAGACCTCGGCGTGGCGGCGGCAATGGCCAGC GCCACCTCCGGCCTCATCATAAGCATCGGAGACCTCAAGCAGCTGGTCCCCGATGAGGAC GCGGAGGCGCAGGAGAATGGGCGGCGGGTGGTGGCGGAGGTGACGCGAGTGCTGGAGGCG CACAGCAAGGTCGGCCGCGTCTGGGTGATGGGGTGGTCGGCAACGTACGAGACCTACCTC GCCTTCCTCTCCAAATTCCCCTTGGTCGACAAGGATTGGGACCTCCAGCTGCTGCCAATC ACCGCGGTGCATGCTGCCCCTGCCGCCGCCGGCCCTGCTGCTGCTGGTGGACTCATGCCT CCGGCAACCACTGTTGCTGCCTTCTCCAAGCCAGCTGCAAGCTTGATGGACTCCTTTGTT CCTTTTGGAGGCTTTCTCTGTGATAACTACGAAGAGAACAGCCTGACAGCAAATTCATGC CCACAGGCCCTGCGGTGCCAGCAGTGCAATGATAAATATGAGCAAGAAGTTGCAACTATC ATTAGCGCAAGTGGCATTACAGCTGAAGACCATCACCAGGGAGGTCTTCCTTCACTGCTG CAGAATGGCAGCATGATGGGTCCTAACAATGGATTTGATCCAGTCAAGGTTAGAGATGAT CGGATGGTATTGAATTCAAAAATATTGAATCTACAGAAGAAGTGGAACGAGTACTGCCTG CGGCTCCACCAAGACTGCCAGAGGATCAACAGAGATCCTTACAAACCATTTCCACGCTAT ATTGGTGTTCCCGCTGACAAAGAAAGATCAGCAAATCCAAGCAAAGGTTCTGAGTCAATT GGGGTTCAAAAGGATGTTATTAAACCTTGTGCAGTGTCTGCTGTACATTCCAGCTCAACT GCAAGGCCTATTTCATCTCCATCTGTCACCAACAAAAGAAATGAAGATCTTGTATTGAAC CTTCAAGCCAGGCATTCCAAGAGTGATGAAAACCTTCAAGAAAGGGGCATGCAATCCCAA CATGGCACCCTGTCGAATGCTGACAATCCGGATGATCATGCCTCACCATCATCTGCTGCA CCTGTGGAGACTGACTTGGTTTTGTGCACCCCTCGAGATTGTAGTTCGAAAGGTTCAAGT TCCACCTGCAGTAAACGTGTAGAGGATTCAGAGAGGTCTGTCCATCTGGTACCCAAGAAG GTGGATGATTTAAATCTGAAGCATCCACAACTCTCTGTTCAACCTAACTCTTGCTCCTGG AGTTCCATAAATGTTGGGAAAACATCACACAGTACACTACACTCAGTAGCTTCAGGAGGC TTCTCTGCCTTTGGCCAATGGCAGAAACGGTCACCCCTTGCTGCACAAAATTCTGATCTG AGCAATTACAAGCTACTTGTCGAACGCCTGTTCAAGGTAGTTGGAAGGCAGGAGGAAGCC GTGAGTGCTATTTGTGAATCCATTGTGCGGTGCCGGTCAACAGAGTCGCGCCGTGGTCCT AGCAGGAATGACATCTGGTTGTGTTTTCATGGTTCTGACAGCATGGCCAAGAAGAGAATC GCCGTGGCACTTGCAGAGCTCATGCACGGCAGCAAAGAGAACTTGATTTATCTGGACCTA AACCTTCAGGATTGGGATGACTCCAGTTTCAGAGGGAAGACTGGCATAGACTGCATTGTG GAGCAGTTGAGCAAGAAACGGCGATCTGTTCTCTTCCTTGACAACATTGATAGAGCTGAC TGCCTTGTTCAGGATAGTCTGTCTGATGCTATTAAGTCTGGCAGGTTCCAGGACATGCGA GGCAAGGTGGTTGACATTAATGACTCGATTGTGGTTTTGTCAAGAAGCATGATACATGGC AGCAAAAATGGGTTGGAAGAGGGCCTTTCATTTTCTGAAGAAAAGATTCTGGCAACTCGC GGACATCGACTGAAGATCCTGGTTGAACCGGGTAGGGCAATCACCAGTGGATGCCCTAGT GGTAAGGTGGTAGTTTCCCCAAGGCATTTTCTCACCAAAATTCAAGCATCTTTGTGCTCT GGTTCAATCAGCAAGAGAAAGCTCAGCATGTCTGATGACCAGGAAAAGCTACAAGAGTCG CCAAGCAGTTTGAAGCGACTGCATAGAACATCGAGTATACCGTTCGACCTGAACCTCCCT GTTGATGAGGATGAACCCTTTGATGCTGATGACGACAGTAGTAGCCATGAAAACTCATAT GGCAACACAGAAAAATCCATTGATGCCCTTTTGCATTCAGTTGATGGATCAATCAATTTT AAGCCGTTTGACTTTGATAAACTTGCGGATGACATGCTGCAGGAGTTCAGCAACATACTC AGGAAAAATCTGGGTGCTGAGTGCATGTTGGAGATTGATGTTGGTGCAATGGAGCAAATA CTTGCCGCAGCATGGAAATCAGAGGACAAGGGCCCTGTGCAGACCTGGCTGGAGCAGGTT TTTGCCAGGAGCCTTGACGAGCTGAAGCTCAAATATAAGCATGTGAGTAGCTCTACCCTT AGACTAGTGCCCTGTGAGGACACATTACCAACAGTGAAAGGAGATGGTTTAGGAGTTTTG CTCCCACCAAGAATAATTCTAGATTGTTGA

Peptide Sequence

PEP ID	Os12t0104300-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:220457:225793:1 gene:Os12g0104300 transcript:Os12t0104300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:D53-like description:Clp, N-terminal domain containing protein. (Os12t0104300-01);Hypothetical conserved gene. (Os12t0104300-02)
Sequence	MPTPVAAARQCLSPAAVPALDAAVASARRRAHAQTTSLHLISSLLAPPAPPLLRDALARA RSAAYSPRVQLKALDLCFAVSLDRLPSVSASSSSGAADEPPVSNSLMAAIKRSQANQRRN PDTFHFYHQAATAQTPAAVKVELSHLVLAILDDPVVSRVFAEAGFRSGDIKLAILRPAPP MPLLGRLPTRTRPPPLFLCSFAAADDADVPSPAGNLAGAGEENCRRIAEILSRGRNPMLV GVGAASAADDFAAASPYRIIHVDPNTIDRSDLGVAAAMASATSGLIISIGDLKQLVPDED AEAQENGRRVVAEVTRVLEAHSKVGRVWVMGWSATYETYLAFLSKFPLVDKDWDLQLLPI TAVHAAPAAAGPAAAGGLMPPATTVAAFSKPAASLMDSFVPFGGFLCDNYEENSLTANSC PQALRCQQCNDKYEQEVATIISASGITAEDHHQGGLPSLLQNGSMMGPNNGFDPVKVRDD RMVLNSKILNLQKKWNEYCLRLHQDCQRINRDPYKPFPRYIGVPADKERSANPSKGSESI GVQKDVIKPCAVSAVHSSSTARPISSPSVTNKRNEDLVLNLQARHSKSDENLQERGMQSQ HGTLSNADNPDDHASPSSAAPVETDLVLCTPRDCSSKGSSSTCSKRVEDSERSVHLVPKK VDDLNLKHPQLSVQPNSCSWSSINVGKTSHSTLHSVASGGFSAFGQWQKRSPLAAQNSDL SNYKLLVERLFKVVGRQEEAVSAICESIVRCRSTESRRGPSRNDIWLCFHGSDSMAKKRI AVALAELMHGSKENLIYLDLNLQDWDDSSFRGKTGIDCIVEQLSKKRRSVLFLDNIDRAD CLVQDSLSDAIKSGRFQDMRGKVVDINDSIVVLSRSMIHGSKNGLEEGLSFSEEKILATR GHRLKILVEPGRAITSGCPSGKVVVSPRHFLTKIQASLCSGSISKRKLSMSDDQEKLQES PSSLKRLHRTSSIPFDLNLPVDEDEPFDADDDSSSHENSYGNTEKSIDALLHSVDGSINF KPFDFDKLADDMLQEFSNILRKNLGAECMLEIDVGAMEQILAAAWKSEDKGPVQTWLEQV FARSLDELKLKYKHVSSSTLRLVPCEDTLPTVKGDGLGVLLPPRIILDC

Transcript Sequence

Transcript ID	Os12t0104300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:220457:225793:1 gene:Os12g0104300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:D53-like description:Clp, N-terminal domain containing protein. (Os12t0104300-01);Hypothetical conserved gene. (Os12t0104300-02)
Sequence	ATCCCTTCCTTCCTTCCATTTTATTTTCTTTTATTTTCCCAACAAAGAGAAAAGAGGGTG AGGAGCCTCCATCCGCGAAAAGCAACTCCACCCGACAACCTGCCCCATGCACTTTCCGTT ATTCTCATTTCACCCCTCGCAATTTTACACTCCGCCCCCCATGCCCTCTCAAAACTAATT ACAATCCAGTCCTTCACCGGTCAGCGATGCCCACTCCGGTGGCCGCCGCGAGGCAGTGCC TCTCGCCGGCCGCCGTCCCCGCCCTCGACGCCGCCGTCGCCTCCGCTCGCCGCCGCGCCC ACGCCCAGACTACCTCCCTCCACCTCATCTCCTCCCTCCTCGCCCCGCCCGCACCTCCCC TCCTCCGCGACGCCCTCGCCCGCGCCCGCAGCGCCGCCTACTCCCCACGCGTCCAGCTCA AGGCCCTCGACCTCTGCTTCGCCGTCTCCCTCGACAGGCTCCCCTCCGTCTCCGCCTCCT CCTCCTCTGGCGCCGCCGACGAGCCCCCCGTCTCCAACTCCCTCATGGCCGCCATCAAGC GCTCCCAGGCCAACCAGCGCCGCAACCCGGACACCTTCCACTTCTACCACCAGGCCGCCA CCGCCCAGACCCCCGCCGCCGTCAAGGTCGAGCTCTCCCACCTCGTCCTCGCCATCCTCG ATGACCCCGTCGTCAGCCGCGTCTTCGCCGAGGCCGGATTCCGCAGCGGGGACATCAAGC TCGCCATCCTCCGCCCGGCTCCGCCCATGCCGCTCCTCGGCCGCCTACCCACGCGCACCC GCCCGCCTCCTCTCTTCCTCTGCAGCTTCGCCGCCGCGGACGACGCCGACGTCCCTTCGC CTGCGGGGAACCTCGCGGGCGCGGGGGAGGAGAACTGCCGCCGCATCGCCGAGATCCTCT CCCGCGGCCGCAACCCCATGCTCGTCGGCGTCGGGGCCGCCTCCGCCGCGGACGACTTCG CGGCCGCCTCCCCGTATCGTATCATCCATGTCGACCCCAACACCATCGACCGCTCAGACC TCGGCGTGGCGGCGGCAATGGCCAGCGCCACCTCCGGCCTCATCATAAGCATCGGAGACC TCAAGCAGCTGGTCCCCGATGAGGACGCGGAGGCGCAGGAGAATGGGCGGCGGGTGGTGG CGGAGGTGACGCGAGTGCTGGAGGCGCACAGCAAGGTCGGCCGCGTCTGGGTGATGGGGT GGTCGGCAACGTACGAGACCTACCTCGCCTTCCTCTCCAAATTCCCCTTGGTCGACAAGG ATTGGGACCTCCAGCTGCTGCCAATCACCGCGGTGCATGCTGCCCCTGCCGCCGCCGGCC CTGCTGCTGCTGGTGGACTCATGCCTCCGGCAACCACTGTTGCTGCCTTCTCCAAGCCAG CTGCAAGCTTGATGGACTCCTTTGTTCCTTTTGGAGGCTTTCTCTGTGATAACTACGAAG AGAACAGCCTGACAGCAAATTCATGCCCACAGGCCCTGCGGTGCCAGCAGTGCAATGATA AATATGAGCAAGAAGTTGCAACTATCATTAGCGCAAGTGGCATTACAGCTGAAGACCATC ACCAGGGAGGTCTTCCTTCACTGCTGCAGAATGGCAGCATGATGGGTCCTAACAATGGAT TTGATCCAGTCAAGGTTAGAGATGATCGGATGGTATTGAATTCAAAAATATTGAATCTAC AGAAGAAGTGGAACGAGTACTGCCTGCGGCTCCACCAAGACTGCCAGAGGATCAACAGAG ATCCTTACAAACCATTTCCACGCTATATTGGTGTTCCCGCTGACAAAGAAAGATCAGCAA ATCCAAGCAAAGGTTCTGAGTCAATTGGGGTTCAAAAGGATGTTATTAAACCTTGTGCAG TGTCTGCTGTACATTCCAGCTCAACTGCAAGGCCTATTTCATCTCCATCTGTCACCAACA AAAGAAATGAAGATCTTGTATTGAACCTTCAAGCCAGGCATTCCAAGAGTGATGAAAACC TTCAAGAAAGGGGCATGCAATCCCAACATGGCACCCTGTCGAATGCTGACAATCCGGATG ATCATGCCTCACCATCATCTGCTGCACCTGTGGAGACTGACTTGGTTTTGTGCACCCCTC GAGATTGTAGTTCGAAAGGTTCAAGTTCCACCTGCAGTAAACGTGTAGAGGATTCAGAGA GGTCTGTCCATCTGGTACCCAAGAAGGTGGATGATTTAAATCTGAAGCATCCACAACTCT CTGTTCAACCTAACTCTTGCTCCTGGAGTTCCATAAATGTTGGGAAAACATCACACAGTA CACTACACTCAGTAGCTTCAGGAGGCTTCTCTGCCTTTGGCCAATGGCAGAAACGGTCAC CCCTTGCTGCACAAAATTCTGATCTGAGCAATTACAAGCTACTTGTCGAACGCCTGTTCA AGGTAGTTGGAAGGCAGGAGGAAGCCGTGAGTGCTATTTGTGAATCCATTGTGCGGTGCC GGTCAACAGAGTCGCGCCGTGGTCCTAGCAGGAATGACATCTGGTTGTGTTTTCATGGTT CTGACAGCATGGCCAAGAAGAGAATCGCCGTGGCACTTGCAGAGCTCATGCACGGCAGCA AAGAGAACTTGATTTATCTGGACCTAAACCTTCAGGATTGGGATGACTCCAGTTTCAGAG GGAAGACTGGCATAGACTGCATTGTGGAGCAGTTGAGCAAGAAACGGCGATCTGTTCTCT TCCTTGACAACATTGATAGAGCTGACTGCCTTGTTCAGGATAGTCTGTCTGATGCTATTA AGTCTGGCAGGTTCCAGGACATGCGAGGCAAGGTGGTTGACATTAATGACTCGATTGTGG TTTTGTCAAGAAGCATGATACATGGCAGCAAAAATGGGTTGGAAGAGGGCCTTTCATTTT CTGAAGAAAAGATTCTGGCAACTCGCGGACATCGACTGAAGATCCTGGTTGAACCGGGTA GGGCAATCACCAGTGGATGCCCTAGTGGTAAGGTGGTAGTTTCCCCAAGGCATTTTCTCA CCAAAATTCAAGCATCTTTGTGCTCTGGTTCAATCAGCAAGAGAAAGCTCAGCATGTCTG ATGACCAGGAAAAGCTACAAGAGTCGCCAAGCAGTTTGAAGCGACTGCATAGAACATCGA GTATACCGTTCGACCTGAACCTCCCTGTTGATGAGGATGAACCCTTTGATGCTGATGACG ACAGTAGTAGCCATGAAAACTCATATGGCAACACAGAAAAATCCATTGATGCCCTTTTGC ATTCAGTTGATGGATCAATCAATTTTAAGCCGTTTGACTTTGATAAACTTGCGGATGACA TGCTGCAGGAGTTCAGCAACATACTCAGGAAAAATCTGGGTGCTGAGTGCATGTTGGAGA TTGATGTTGGTGCAATGGAGCAAATACTTGCCGCAGCATGGAAATCAGAGGACAAGGGCC CTGTGCAGACCTGGCTGGAGCAGGTTTTTGCCAGGAGCCTTGACGAGCTGAAGCTCAAAT ATAAGCATGTGAGTAGCTCTACCCTTAGACTAGTGCCCTGTGAGGACACATTACCAACAG TGAAAGGAGATGGTTTAGGAGTTTTGCTCCCACCAAGAATAATTCTAGATTGTTGATGAT ATTATCTGTATAGGGATCGCTGTAATTATCTGTAGTCCACAATAGTATAGCATTATTTGT TGGCTAAATAAGCTCTAGTCTAGCTGATGCATTGCCTTGGGTTCTCTAATTAGCTACTGC CAGTACTGTCATATCATTTTCTACCTCAGGGCCTTTTCCAGATATATGGGCATCCGAATG TATATTGGTTGTAACTACTATGGATTGTCAATATTTGATTGTTCTATATATACATGGACA CATGGTGCTCGGTC