Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0103000-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:136532:141056:-1 gene:Os12g0103000 gene_biotype:protein_coding transcript_biotype:protein_coding description:EF-Hand type domain containing protein. (Os12t0103000-01)
Sequence

ATGTCCGGGTCGGAGCACCCCATGGTGGCCGCCGCCCGCGCCGCCCTCGCCCACCTCCAA
CTTCCCTTGCCCCCCGCCCCCGCCGGATCCAATATGGATCATCATCTTCTTCCTCATTTC
CTCCACAGGTCTCCCCCCTCTCCATGCTTCCTCCTCCTCCGCACCCAACACAAGCCTAAA
CCGCCGCAGCCGCAGCTCCACCTCCTTCTCTGCACTGCTTTCGATTCCCTGGCCCATAGC
CTGCAGGAGGTCCTGGACAAGCACAAACCAAAGCTACATCTGGACACATTATTCCTCCAT
GGAAACCTCCCTTTCGCAAAGGTTGGGGTACCGCCGCCTCCCCCGCCACCCGCACCCCTC
CTCTCCCCACCGTCTGTCTCCGCCCACCACCAACACCAACCTGCAACTCCAACTGAAACC
GAAACCGAGGACACTGCTGCTAATGACTCTCCACCACCACGGACCCTGCCTGTTCGCCTG
CTCAACATCCCTGTTGACCGCCTACGCTCCACACTTTCCACACTTTCACTCACCGAGTTG
ATTGACCTAGTTCCACACCTGGTTGCTAGGTCCTTGCCATCCCCTGATACTCATCCAGAC
AAGAAGAAACTCTTCTCTGTACACCACTTCTTCCGATATGCAGAATTTGAAGGAAAGCGA
TTCTTTGAGGAGTTAGACAGAGATGGTGATGGTCAAGTCACCCTGGAAGACCTTGAGATT
GCAATGAGAAAGAGGCGATTGCCAAGGAGGTATGCTCGGGATTTTTTACGGCGCACCAGA
AGTAACTTGTTTTCAAAATCAATTGGGTGGAAACAATTTCTATCCTTGATGGAGCAGAAG
GAGCCAACAATATTGCGGGCATACACCACCCTGTGTTTGAGCAAGTCTGGGACACTTCAC
AAAAATCAAATTCTCACATCTTTAAAAGGTGCAGGCCTTCCGGCCAATGAAGATAATGCT
GCTGCCATGCTGCGGTACCTAAATGCAGATTCAGAAGAATCAATCTCCTACAGCCATTTT
CGCAATTTCATGCTCCTGCTTCCTTCAGAGCGCCTTGAAGATGACCCTCGGAACATTTGG
TTTGAAGCTGCTACTTTGGTTGCTGTTCCTCCACCGGTAGAAATATCAACTGGAAGTGTT
CTGAAGTCTGCTTTAGCTGGAGGTCTTGCTAGTGCACTTTCTACCTCCGTGATGCATCCC
ATTGATTCAATGAAGACACGTGTCCAAGCATCTTCTCTTTCTTTTCCTGATCTCATATCA
ACACTTCCACAAATTGGGCTCCGAGGACTTTATCGGGGTTCTATCCCCGCAATTCTTGGT
CAGTTTTCAAGCCATGGTTTGAGAACAGGAATATTTGAGGCAAGCAAGCTTGTGTTAAAA
AGTGTTGCTCCAACACTTTCAGATATTCAGGTGCAATCACTCTCTTCCTTCTGCAGCACC
ATCCTGGGAACAGCAGTCCGTATACCTTGTGAGGTTCTTAAGCAGCGTTTGCAGGCTGGA
ATCTTCAATAATGTAGGGGAGGCCATTGTTGGTACCATGCAAAAAGATGGTCCAAAGGGC
TTCTTCCGTGGCACTGGGGCCACTCTTTGCCGAGAGGTTCCTTTCTATGTTGCTGGAATG
TGTCTTTATGCAGAAGCTAAAAAGGCGGCACAGCATGTGTTGAACAGAGACTTGGAACCA
TGGGAAACTATTGCAGTGGGAGCGTTGTCTGGAGGGCTTGCAGCAGTTGTCACAACTCCC
TTTGATGTGATGAAGACTCGGATGATGACTGCTCCACCAGGCACCCCAGTCTCCATGCAG
TTGATAGTTTTCTCCATCCTTCGAAATGAGGGACCTCTCGGACTGTTCAAGGGTGCGATC
CCCCGCTTCTTCTGGATTGCTCCTCTCGGAGCAATGAACTTTGCAGGCTATGAGCTCGCC
AAGAAAGCAATGATCCAAACTGAGAGTGACTCCGCAGACTCTGTACATGAGAAGAGAACC
ACAGTGGGTTCCAGAGGATGA

Peptide Sequence

PEP ID

Os12t0103000-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:136532:141056:-1 gene:Os12g0103000 transcript:Os12t0103000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:EF-Hand type domain containing protein. (Os12t0103000-01)
Sequence

MSGSEHPMVAAARAALAHLQLPLPPAPAGSNMDHHLLPHFLHRSPPSPCFLLLRTQHKPK
PPQPQLHLLLCTAFDSLAHSLQEVLDKHKPKLHLDTLFLHGNLPFAKVGVPPPPPPPAPL
LSPPSVSAHHQHQPATPTETETEDTAANDSPPPRTLPVRLLNIPVDRLRSTLSTLSLTEL
IDLVPHLVARSLPSPDTHPDKKKLFSVHHFFRYAEFEGKRFFEELDRDGDGQVTLEDLEI
AMRKRRLPRRYARDFLRRTRSNLFSKSIGWKQFLSLMEQKEPTILRAYTTLCLSKSGTLH
KNQILTSLKGAGLPANEDNAAAMLRYLNADSEESISYSHFRNFMLLLPSERLEDDPRNIW
FEAATLVAVPPPVEISTGSVLKSALAGGLASALSTSVMHPIDSMKTRVQASSLSFPDLIS
TLPQIGLRGLYRGSIPAILGQFSSHGLRTGIFEASKLVLKSVAPTLSDIQVQSLSSFCST
ILGTAVRIPCEVLKQRLQAGIFNNVGEAIVGTMQKDGPKGFFRGTGATLCREVPFYVAGM
CLYAEAKKAAQHVLNRDLEPWETIAVGALSGGLAAVVTTPFDVMKTRMMTAPPGTPVSMQ
LIVFSILRNEGPLGLFKGAIPRFFWIAPLGAMNFAGYELAKKAMIQTESDSADSVHEKRT
TVGSRG

Transcript Sequence

Transcript ID

Os12t0103000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:136532:141056:-1 gene:Os12g0103000 gene_biotype:protein_coding transcript_biotype:protein_coding description:EF-Hand type domain containing protein. (Os12t0103000-01)
Sequence

GTGGCCTCTTCTTCCTCCTCCGCGGCCGGGGACGGGGAACTACCCCCCGCCGGCCGCCGC
AAATCCTCCTGCTCGTCGTCGTGGTGAGCTATGTCCGGGTCGGAGCACCCCATGGTGGCC
GCCGCCCGCGCCGCCCTCGCCCACCTCCAACTTCCCTTGCCCCCCGCCCCCGCCGGATCC
AATATGGATCATCATCTTCTTCCTCATTTCCTCCACAGGTCTCCCCCCTCTCCATGCTTC
CTCCTCCTCCGCACCCAACACAAGCCTAAACCGCCGCAGCCGCAGCTCCACCTCCTTCTC
TGCACTGCTTTCGATTCCCTGGCCCATAGCCTGCAGGAGGTCCTGGACAAGCACAAACCA
AAGCTACATCTGGACACATTATTCCTCCATGGAAACCTCCCTTTCGCAAAGGTTGGGGTA
CCGCCGCCTCCCCCGCCACCCGCACCCCTCCTCTCCCCACCGTCTGTCTCCGCCCACCAC
CAACACCAACCTGCAACTCCAACTGAAACCGAAACCGAGGACACTGCTGCTAATGACTCT
CCACCACCACGGACCCTGCCTGTTCGCCTGCTCAACATCCCTGTTGACCGCCTACGCTCC
ACACTTTCCACACTTTCACTCACCGAGTTGATTGACCTAGTTCCACACCTGGTTGCTAGG
TCCTTGCCATCCCCTGATACTCATCCAGACAAGAAGAAACTCTTCTCTGTACACCACTTC
TTCCGATATGCAGAATTTGAAGGAAAGCGATTCTTTGAGGAGTTAGACAGAGATGGTGAT
GGTCAAGTCACCCTGGAAGACCTTGAGATTGCAATGAGAAAGAGGCGATTGCCAAGGAGG
TATGCTCGGGATTTTTTACGGCGCACCAGAAGTAACTTGTTTTCAAAATCAATTGGGTGG
AAACAATTTCTATCCTTGATGGAGCAGAAGGAGCCAACAATATTGCGGGCATACACCACC
CTGTGTTTGAGCAAGTCTGGGACACTTCACAAAAATCAAATTCTCACATCTTTAAAAGGT
GCAGGCCTTCCGGCCAATGAAGATAATGCTGCTGCCATGCTGCGGTACCTAAATGCAGAT
TCAGAAGAATCAATCTCCTACAGCCATTTTCGCAATTTCATGCTCCTGCTTCCTTCAGAG
CGCCTTGAAGATGACCCTCGGAACATTTGGTTTGAAGCTGCTACTTTGGTTGCTGTTCCT
CCACCGGTAGAAATATCAACTGGAAGTGTTCTGAAGTCTGCTTTAGCTGGAGGTCTTGCT
AGTGCACTTTCTACCTCCGTGATGCATCCCATTGATTCAATGAAGACACGTGTCCAAGCA
TCTTCTCTTTCTTTTCCTGATCTCATATCAACACTTCCACAAATTGGGCTCCGAGGACTT
TATCGGGGTTCTATCCCCGCAATTCTTGGTCAGTTTTCAAGCCATGGTTTGAGAACAGGA
ATATTTGAGGCAAGCAAGCTTGTGTTAAAAAGTGTTGCTCCAACACTTTCAGATATTCAG
GTGCAATCACTCTCTTCCTTCTGCAGCACCATCCTGGGAACAGCAGTCCGTATACCTTGT
GAGGTTCTTAAGCAGCGTTTGCAGGCTGGAATCTTCAATAATGTAGGGGAGGCCATTGTT
GGTACCATGCAAAAAGATGGTCCAAAGGGCTTCTTCCGTGGCACTGGGGCCACTCTTTGC
CGAGAGGTTCCTTTCTATGTTGCTGGAATGTGTCTTTATGCAGAAGCTAAAAAGGCGGCA
CAGCATGTGTTGAACAGAGACTTGGAACCATGGGAAACTATTGCAGTGGGAGCGTTGTCT
GGAGGGCTTGCAGCAGTTGTCACAACTCCCTTTGATGTGATGAAGACTCGGATGATGACT
GCTCCACCAGGCACCCCAGTCTCCATGCAGTTGATAGTTTTCTCCATCCTTCGAAATGAG
GGACCTCTCGGACTGTTCAAGGGTGCGATCCCCCGCTTCTTCTGGATTGCTCCTCTCGGA
GCAATGAACTTTGCAGGCTATGAGCTCGCCAAGAAAGCAATGATCCAAACTGAGAGTGAC
TCCGCAGACTCTGTACATGAGAAGAGAACCACAGTGGGTTCCAGAGGATGACAGATCCAA
ATTCACCTGGTTACTCTATATGGTGTAAAGAAAGGACAAGCCATGCAACAGAAATGTTTT
TGCCCTTGTTGCAAAGAATTAGAACC