Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0101800-02
CDS Infomation	cds chromosome:IRGSP-1.0:12:82408:89955:1 gene:Os12g0101800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Nonphototrophic hypocotyl 1a. (Os12t0101800-01);Similar to Nonphototrophic hypocotyl 1a. (Os12t0101800-02)
Sequence	AAAAGAGAAAAAAATCAACAATTAATATTTACAGCTCGACAGAAGGATCACGCCCGTAGC TCAGTGTCTGAGCTCTTGTTGGCTCTCAAAAATCCACGCTCATTGTCAGAATCAAGCAAT AACACCTTAAAAAGAAAATCACAAGAATCCCTAAGCATGTCAATGACCGAAGTTCCTAGT AAGAGAAGCTCTGAAAGTGGATCTCGCCGAAATTCTCGTAGCGGAACAAGGAGCTCGCTT CAGAAGATCAATGAAGTACCTGATCAAGGGAATAGAACTAGAAAATCTGGTCTGCGTGCA TTTATGGGTTTTCTTGGTATGGGCCATGGAAGTGTAGAGAAGAACATGCTGAAACCTAGA GATGAAGATCCACTGATCGATAGTGATGATGAAAGACCTGAGAGCTTTGAAGATGAGTTT AGGAGGAAAGAAATGAGGAGGGGTATAGACTTGGCTACTACACTTGAACGTATTGAGAAG AATTTTGTCATCACAGATCCAAGGTTGCCTGATAATCCCATTATATTTGCATCCGATAGC TTTCTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGGTTTCTT CAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGATGCCATAGATAACCAG GCAGAGGTCACAGTTCAGCTCATAAATTATACAAAAAGTGGTAAAAAGTTTTGGAACCTC TTTCACTTGCAACCAATGCGTGATCAAAAGGGTGATGTTCAGTACTTTATTGGGGTTCAA TTGGATGGAACTGAGCATGTTCAGGATGATGCTGCAAAAGAGGGAGTCGTGCTGGTTAAG AAAACCGCAGATAATATCGATGAGGCTGCAAAGGAACTCCCGGATGCTAATTTGAGACCG GAAGATCTATGGGCTAACCACTCAAAAGTAGTCCTGCCAAATCCACATATGAAGGATACT GCATCATGGAGAGCCATCCAAAAGGTTCTCGAGAGTGGTGAAAGTATTGGTTTAAAACAT TTTAGGCCAGTAAAACCATTAGGATCTGGTGACACTGGAAGTGTACACTTGGTAGAGTTG TTGAATACAGGAGAATACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGC AATAAGGTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCATTC CTTCCAACATTATATGCATCATTTCAGACAAAAACGCATATATGCCTCATTACTGACTAC TGCCCGGGTGGTGAGCTCTTTGTGCTTCTAGATAATCAACCTCTGAAGGTTCTACATGAA GATGCAGTCAGGTTCTATGCTGCCGAAGTGGTTGTTGCACTAGAATACCTACATTGCCAA GGTATAATATACCGAGACTTAAAACCAGAGAATATCTTACTTCATAGAGATGGGCACATC TCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGGTCTTTCTTCCC GAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGTTACCCCATATTTTTTGCTGAA CCTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTGAGATTATT ACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAGGGATTCTTCTATATGAA ATGTTGTATGGTTATACACCTTTTAGAGGAAAAACGAGGCAACGGACATTTGCTAATATC TTGCACAAGGATATCAGATTTCCTGCTAGTATATCGGTCAGCCTAGCGGCGAGGCAGCTA ATGTATAGGTTGCTACATAGGGATCCTGCCAACAGGCTAGGGTCCTACGAGGGAGCCAAT GAGATAAAAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGGCG CCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGAAGGGACTAGTA ACAAATAACCGCACGGATATGTTCTGA

Peptide Sequence

PEP ID	Os12t0101800-02
PEP Infomation	pep chromosome:IRGSP-1.0:12:82408:89955:1 gene:Os12g0101800 transcript:Os12t0101800-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Nonphototrophic hypocotyl 1a. (Os12t0101800-01);Similar to Nonphototrophic hypocotyl 1a. (Os12t0101800-02)
Sequence	KREKNQQLIFTARQKDHARSSVSELLLALKNPRSLSESSNNTLKRKSQESLSMSMTEVPS KRSSESGSRRNSRSGTRSSLQKINEVPDQGNRTRKSGLRAFMGFLGMGHGSVEKNMLKPR DEDPLIDSDDERPESFEDEFRRKEMRRGIDLATTLERIEKNFVITDPRLPDNPIIFASDS FLQLTEYNREEILGRNCRFLQGPETDRATVRKIRDAIDNQAEVTVQLINYTKSGKKFWNL FHLQPMRDQKGDVQYFIGVQLDGTEHVQDDAAKEGVVLVKKTADNIDEAAKELPDANLRP EDLWANHSKVVLPNPHMKDTASWRAIQKVLESGESIGLKHFRPVKPLGSGDTGSVHLVEL LNTGEYFAMKAMDKSIMLNRNKVHRATAERQILDLLDHPFLPTLYASFQTKTHICLITDY CPGGELFVLLDNQPLKVLHEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENILLHRDGHI SLTDFDLSCLTSCRPQVFLPEDADEKKGRKNGSYPIFFAEPMRASNSFVGTEEYIAPEII TGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASISVSLAARQL MYRLLHRDPANRLGSYEGANEIKGHPFFRGINWPLIRATAPPKLEIPLFSKDDMEKKGLV TNNRTDMF

Transcript Sequence

Transcript ID	Os12t0101800-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:82408:89955:1 gene:Os12g0101800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Nonphototrophic hypocotyl 1a. (Os12t0101800-01);Similar to Nonphototrophic hypocotyl 1a. (Os12t0101800-02)
Sequence	GTTTTATCCATAAGGTCTTGGAAATTTACAACTTTTGGTTTCAAACTAAAAAAGAGAAAA AAATCAACAATTAATATTTACAGCTCGACAGAAGGATCACGCCCGTAGCTCAGTGTCTGA GCTCTTGTTGGCTCTCAAAAATCCACGCTCATTGTCAGAATCAAGCAATAACACCTTAAA AAGAAAATCACAAGAATCCCTAAGCATGTCAATGACCGAAGTTCCTAGTAAGAGAAGCTC TGAAAGTGGATCTCGCCGAAATTCTCGTAGCGGAACAAGGAGCTCGCTTCAGAAGATCAA TGAAGTACCTGATCAAGGGAATAGAACTAGAAAATCTGGTCTGCGTGCATTTATGGGTTT TCTTGGTATGGGCCATGGAAGTGTAGAGAAGAACATGCTGAAACCTAGAGATGAAGATCC ACTGATCGATAGTGATGATGAAAGACCTGAGAGCTTTGAAGATGAGTTTAGGAGGAAAGA AATGAGGAGGGGTATAGACTTGGCTACTACACTTGAACGTATTGAGAAGAATTTTGTCAT CACAGATCCAAGGTTGCCTGATAATCCCATTATATTTGCATCCGATAGCTTTCTGCAATT GACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGGTTTCTTCAAGGCCCTGA AACTGATCGTGCAACAGTTAGGAAGATAAGAGATGCCATAGATAACCAGGCAGAGGTCAC AGTTCAGCTCATAAATTATACAAAAAGTGGTAAAAAGTTTTGGAACCTCTTTCACTTGCA ACCAATGCGTGATCAAAAGGGTGATGTTCAGTACTTTATTGGGGTTCAATTGGATGGAAC TGAGCATGTTCAGGATGATGCTGCAAAAGAGGGAGTCGTGCTGGTTAAGAAAACCGCAGA TAATATCGATGAGGCTGCAAAGGAACTCCCGGATGCTAATTTGAGACCGGAAGATCTATG GGCTAACCACTCAAAAGTAGTCCTGCCAAATCCACATATGAAGGATACTGCATCATGGAG AGCCATCCAAAAGGTTCTCGAGAGTGGTGAAAGTATTGGTTTAAAACATTTTAGGCCAGT AAAACCATTAGGATCTGGTGACACTGGAAGTGTACACTTGGTAGAGTTGTTGAATACAGG AGAATACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAGGTTCA CAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCATTCCTTCCAACATT ATATGCATCATTTCAGACAAAAACGCATATATGCCTCATTACTGACTACTGCCCGGGTGG TGAGCTCTTTGTGCTTCTAGATAATCAACCTCTGAAGGTTCTACATGAAGATGCAGTCAG GTTCTATGCTGCCGAAGTGGTTGTTGCACTAGAATACCTACATTGCCAAGGTATAATATA CCGAGACTTAAAACCAGAGAATATCTTACTTCATAGAGATGGGCACATCTCCCTTACAGA CTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGGTCTTTCTTCCCGAAGATGCTGA TGAGAAAAAAGGGAGAAAAAACGGGAGTTACCCCATATTTTTTGCTGAACCTATGCGAGC ATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTGAGATTATTACAGGAGCTGG CCATACAAGCGCTGTTGATTGGTGGGCTCTAGGGATTCTTCTATATGAAATGTTGTATGG TTATACACCTTTTAGAGGAAAAACGAGGCAACGGACATTTGCTAATATCTTGCACAAGGA TATCAGATTTCCTGCTAGTATATCGGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTT GCTACATAGGGATCCTGCCAACAGGCTAGGGTCCTACGAGGGAGCCAATGAGATAAAAGG ACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGGCGCCTCCAAAGTT GGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGAAGGGACTAGTAACAAATAACCG CACGGATATGTTCTGAAGACCCTGATGATGATCTTCAATAAAAGAGAGGGACATATATTG TTGCTTGCTTTGCGTGCGTAGGCCAAGATTAAGATTATGTCATGTAAATATGTAATGTAT CGTACAGACCTTGTTGTGTTTGAACCTAGTATGCGATCCATCATCTTAATAAGATGCAAT GCAGCGCAATGTGTGCCAGTGAACAGTAATGAGCTTGACTTGAGTTTATAGTAGTCTAGT ATAGTGAGTAGAGGAAAAAAAGAGTAAATTGTATTGACGGTACGTAAACTTGTCAAGTGG GTGCAATTTAGTATACGAACTTGTAAAACACTCATTTGGATGTATGAATTTGTTTGATGT GTGTGAACC