Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0101800-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:75290:89955:1 gene:Os12g0101800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Nonphototrophic hypocotyl 1a. (Os12t0101800-01);Similar to Nonphototrophic hypocotyl 1a. (Os12t0101800-02)
Sequence	ATGGCTTCCAAAGGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAG CAGAGGGGTTACCAGCTGCCCCGTGACTCCCGGGGATCACTCGAGGTGTTCAACCCCTCA TCCGCTTCCTCCTTCCGCACTGCTGCTGCCGCCCCCAAGTCCGCCTCCCCCTTCCTTGCT ATTCCCGACAGGGAAGAGGATAATGTGGTGGCACAGCAGCGGGCAGCAGAGTGGGGCCTC GTCCTCCAGACCGACCACCACACAGGCCTCCCCCAGGGCGTCTCCGCACGACCCTCCTCT GGCTCTGCACGCACCAGCTCTGAGGACAACCCACAGCAACAGCAGAGCGCCGCCGCCATC CCACGGGTGTCGGAGGAGCTACGGGCGGCACTATCAGCGTTCCAACAGACGTTTGTGGTG TCTGATGCCACCCACCCCAACCACCCCATCATGTACGCCAGCGCTGGCTTCTTCAACATG ACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTGCCGCTTCCTTCAAGGCTCTGGC ACCGACCCCCATGAGATTGACAAGATCAGGCAATCCCTCGCAAATGGCTCCAACTATTGT GGCCGCATCCTCAACTACAAGAAGGACGGCACGCCATTCTGGAACCTCTTAACCATTGCC CCTATCAAGGATGAGGACGGCAGGCTCCTCAAGTTCATCGGGATGCAAGTGGAAGTTAGT AAATACACTGAAGGGAAAAAGGATACTGTTGTTCGTCCAAATGGACTTTCAGAATCACTC ATCAAATACGATGCTCGACAGAAGGATCACGCCCGTAGCTCAGTGTCTGAGCTCTTGTTG GCTCTCAAAAATCCACGCTCATTGTCAGAATCAAGCAATAACACCTTAAAAAGAAAATCA CAAGAATCCCTAAGCATGTCAATGACCGAAGTTCCTAGTAAGAGAAGCTCTGAAAGTGGA TCTCGCCGAAATTCTCGTAGCGGAACAAGGAGCTCGCTTCAGAAGATCAATGAAGTACCT GATCAAGGGAATAGAACTAGAAAATCTGGTCTGCGTGCATTTATGGGTTTTCTTGGTATG GGCCATGGAAGTGTAGAGAAGAACATGCTGAAACCTAGAGATGAAGATCCACTGATCGAT AGTGATGATGAAAGACCTGAGAGCTTTGAAGATGAGTTTAGGAGGAAAGAAATGAGGAGG GGTATAGACTTGGCTACTACACTTGAACGTATTGAGAAGAATTTTGTCATCACAGATCCA AGGTTGCCTGATAATCCCATTATATTTGCATCCGATAGCTTTCTGCAATTGACAGAATAC AACCGTGAAGAAATATTAGGGAGAAACTGCAGGTTTCTTCAAGGCCCTGAAACTGATCGT GCAACAGTTAGGAAGATAAGAGATGCCATAGATAACCAGGCAGAGGTCACAGTTCAGCTC ATAAATTATACAAAAAGTGGTAAAAAGTTTTGGAACCTCTTTCACTTGCAACCAATGCGT GATCAAAAGGGTGATGTTCAGTACTTTATTGGGGTTCAATTGGATGGAACTGAGCATGTT CAGGATGATGCTGCAAAAGAGGGAGTCGTGCTGGTTAAGAAAACCGCAGATAATATCGAT GAGGCTGCAAAGGAACTCCCGGATGCTAATTTGAGACCGGAAGATCTATGGGCTAACCAC TCAAAAGTAGTCCTGCCAAATCCACATATGAAGGATACTGCATCATGGAGAGCCATCCAA AAGGTTCTCGAGAGTGGTGAAAGTATTGGTTTAAAACATTTTAGGCCAGTAAAACCATTA GGATCTGGTGACACTGGAAGGTAA

Peptide Sequence

PEP ID	Os12t0101800-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:75290:89955:1 gene:Os12g0101800 transcript:Os12t0101800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Nonphototrophic hypocotyl 1a. (Os12t0101800-01);Similar to Nonphototrophic hypocotyl 1a. (Os12t0101800-02)
Sequence	MASKGTEGGHGGVERKEQQQQRGYQLPRDSRGSLEVFNPSSASSFRTAAAAPKSASPFLA IPDREEDNVVAQQRAAEWGLVLQTDHHTGLPQGVSARPSSGSARTSSEDNPQQQQSAAAI PRVSEELRAALSAFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSG TDPHEIDKIRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLLKFIGMQVEVS KYTEGKKDTVVRPNGLSESLIKYDARQKDHARSSVSELLLALKNPRSLSESSNNTLKRKS QESLSMSMTEVPSKRSSESGSRRNSRSGTRSSLQKINEVPDQGNRTRKSGLRAFMGFLGM GHGSVEKNMLKPRDEDPLIDSDDERPESFEDEFRRKEMRRGIDLATTLERIEKNFVITDP RLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIRDAIDNQAEVTVQL INYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVQDDAAKEGVVLVKKTADNID EAAKELPDANLRPEDLWANHSKVVLPNPHMKDTASWRAIQKVLESGESIGLKHFRPVKPL GSGDTGR

Transcript Sequence

Transcript ID	Os12t0101800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:75290:89955:1 gene:Os12g0101800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Nonphototrophic hypocotyl 1a. (Os12t0101800-01);Similar to Nonphototrophic hypocotyl 1a. (Os12t0101800-02)
Sequence	GGGGGGGGCAAAGAAGAGGAATTTAATTATAAGAGGAAGAGGGAGAAGAAGAGCTTAGGT ACAGGCTCCAGTACAAGAGATCGATCGAGAGACAGAGGATCGGAGAGGAGGAAGAAGGAG AATCCAAGTACTGGGAGGCAATTAATTTGAGTTGAGATCGACTTGAGAGCTAGCAGAGGC TCATCTCATCTAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAGGGGTTACC AGCTGCCCCGTGACTCCCGGGGATCACTCGAGGTGTTCAACCCCTCATCCGCTTCCTCCT TCCGCACTGCTGCTGCCGCCCCCAAGTCCGCCTCCCCCTTCCTTGCTATTCCCGACAGGG AAGAGGATAATGTGGTGGCACAGCAGCGGGCAGCAGAGTGGGGCCTCGTCCTCCAGACCG ACCACCACACAGGCCTCCCCCAGGGCGTCTCCGCACGACCCTCCTCTGGCTCTGCACGCA CCAGCTCTGAGGACAACCCACAGCAACAGCAGAGCGCCGCCGCCATCCCACGGGTGTCGG AGGAGCTACGGGCGGCACTATCAGCGTTCCAACAGACGTTTGTGGTGTCTGATGCCACCC ACCCCAACCACCCCATCATGTACGCCAGCGCTGGCTTCTTCAACATGACCGGCTATACCT CCAAGGAGGTTGTCGGCAGGAACTGCCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATG AGATTGACAAGATCAGGCAATCCCTCGCAAATGGCTCCAACTATTGTGGCCGCATCCTCA ACTACAAGAAGGACGGCACGCCATTCTGGAACCTCTTAACCATTGCCCCTATCAAGGATG AGGACGGCAGGCTCCTCAAGTTCATCGGGATGCAAGTGGAAGTTAGTAAATACACTGAAG GGAAAAAGGATACTGTTGTTCGTCCAAATGGACTTTCAGAATCACTCATCAAATACGATG CTCGACAGAAGGATCACGCCCGTAGCTCAGTGTCTGAGCTCTTGTTGGCTCTCAAAAATC CACGCTCATTGTCAGAATCAAGCAATAACACCTTAAAAAGAAAATCACAAGAATCCCTAA GCATGTCAATGACCGAAGTTCCTAGTAAGAGAAGCTCTGAAAGTGGATCTCGCCGAAATT CTCGTAGCGGAACAAGGAGCTCGCTTCAGAAGATCAATGAAGTACCTGATCAAGGGAATA GAACTAGAAAATCTGGTCTGCGTGCATTTATGGGTTTTCTTGGTATGGGCCATGGAAGTG TAGAGAAGAACATGCTGAAACCTAGAGATGAAGATCCACTGATCGATAGTGATGATGAAA GACCTGAGAGCTTTGAAGATGAGTTTAGGAGGAAAGAAATGAGGAGGGGTATAGACTTGG CTACTACACTTGAACGTATTGAGAAGAATTTTGTCATCACAGATCCAAGGTTGCCTGATA ATCCCATTATATTTGCATCCGATAGCTTTCTGCAATTGACAGAATACAACCGTGAAGAAA TATTAGGGAGAAACTGCAGGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGA AGATAAGAGATGCCATAGATAACCAGGCAGAGGTCACAGTTCAGCTCATAAATTATACAA AAAGTGGTAAAAAGTTTTGGAACCTCTTTCACTTGCAACCAATGCGTGATCAAAAGGGTG ATGTTCAGTACTTTATTGGGGTTCAATTGGATGGAACTGAGCATGTTCAGGATGATGCTG CAAAAGAGGGAGTCGTGCTGGTTAAGAAAACCGCAGATAATATCGATGAGGCTGCAAAGG AACTCCCGGATGCTAATTTGAGACCGGAAGATCTATGGGCTAACCACTCAAAAGTAGTCC TGCCAAATCCACATATGAAGGATACTGCATCATGGAGAGCCATCCAAAAGGTTCTCGAGA GTGGTGAAAGTATTGGTTTAAAACATTTTAGGCCAGTAAAACCATTAGGATCTGGTGACA CTGGAAGGTAATCATTTCATGGTTTGGTTAAATTGGATAAACATTGAATTGTTGCCTTTT ATTGCTAATACATTTGACTCATTTTACAATTGTTGTTTCAACAATGTGTATTATGATTGG AATTGAAGTGTACACTTGGTAGAGTTGTTGAATACAGGAGAATACTTTGCCATGAAAGCT ATGGATAAAAGCATCATGCTTAACCGCAATAAGGTTCACAGAGCTACTGCTGAACGCCAA ATCCTTGATCTATTAGATCACCCATTCCTTCCAACATTATATGCATCATTTCAGACAAAA ACGCATATATGCCTCATTACTGACTACTGCCCGGGTGGTGAGCTCTTTGTGCTTCTAGAT AATCAACCTCTGAAGGTTCTACATGAAGATGCAGTCAGGTTCTATGCTGCCGAAGTGGTT GTTGCACTAGAATACCTACATTGCCAAGGTATAATATACCGAGACTTAAAACCAGAGAAT ATCTTACTTCATAGAGATGGGCACATCTCCCTTACAGACTTCGATTTGTCTTGTCTAACA TCTTGCAGACCGCAGGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAAC GGGAGTTACCCCATATTTTTTGCTGAACCTATGCGAGCATCCAATTCATTTGTTGGCACG GAGGAGTACATTGCGCCTGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGG TGGGCTCTAGGGATTCTTCTATATGAAATGTTGTATGGTTATACACCTTTTAGAGGAAAA ACGAGGCAACGGACATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATA TCGGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCTGCCAAC AGGCTAGGGTCCTACGAGGGAGCCAATGAGATAAAAGGACATCCCTTTTTCCGTGGTATA AATTGGCCTCTTATACGCGCCACGGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAG GATGACATGGAGAAGAAGGGACTAGTAACAAATAACCGCACGGATATGTTCTGAAGACCC TGATGATGATCTTCAATAAAAGAGAGGGACATATATTGTTGCTTGCTTTGCGTGCGTAGG CCAAGATTAAGATTATGTCATGTAAATATGTAATGTATCGTACAGACCTTGTTGTGTTTG AACCTAGTATGCGATCCATCATCTTAATAAGATGCAATGCAGCGCAATGTGTGCCAGTGA ACAGTAATGAGCTTGACTTGAGTTTATAGTAGTCTAGTATAGTGAGTAGAGGAAAAAAAG AGTAAATTGTATTGACGGTACGTAAACTTGTCAAGTGGGTGCAATTTAGTATACGAACTT GTAAAACACTCATTTGGATGTATGAATTTGTTTGATGTGTGTGAACC