Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0708600-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:28991727:29000858:-1 gene:Os11g0708600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Mediator 34_2 description:Similar to RECQL1 protein. (Os11t0708600-01);Similar to ATP-dependent DNA helicase, RecQ family protein, expressed. (Os11t0708600-02)
Sequence

ATGTATGAGGAAGACAACATTCAGGGAGAATTGTTACTCGTTCAGGCAGAACTTGATGAC
ATCCAAGGGCAAATTAGTGCACTGATTGATCGTCAAGAGGAGCTGTATGAGCGTGAATCA
CAGCTGAAAGCTATGCTCGAAGTATCTAAAGCATCCAACAACACAATCAATAATACCCCT
TCAGTTGGTCCAAAAGATTGGTCTGGGAGCTTCTTATGGGACTCTCGGGCTGATGATGTT
CGTTTTAATGTATTTGGGATTTCTTCATACCGGCAGAATCAAAGAGAGATAATCAATGCC
ATCATGAGTGGAAGAGATGTACTGGTCATAATGGCTGCTGGTGGAGGGAAGAGCCTCTGC
TATCAACTACCTGCTGTACTTCATGATGGAATTACATTGGTTGTTAGTCCTTTGCTTTCC
CTTATCCAGGACCAGGTCATGGGACTAGCAGCTTTAGGTATACAAGCATACATGCTGGCT
TCAACTACCAATAAGGAAGTCGAGAAGTTCGTCTACAAGGCGCTTGATAAAGGTGAAGGA
GAACTGAAGATATTGTATGTGACACCTGAAAAGATATCCAAAAGTAAAAGGTTCATGTCT
AAGCTTGAGAAATGCCACCATGCAGGGCGTCTTTCTCTCATTGCAATAGATGAGGCACAC
TGCTGTAGTCAATGGGGCCATGATTTTCGCCCAGACTACAAGAATCTTGGCATTTTAAAG
GTCCAGTTTCCCAGTGTTCCTATGATAGCTTTAACTGCAACTGCGACAAATAAAGTGCAA
ATTGATTTGATAGAGATGCTTCATATCCCTAGATGTGTCAAGTTTGTCAGCACAATTAAC
AGGCCCAACCTTTTCTATAAAGTATTTGAGAAATCACCAGTTGGAAAGGTCGTCATTGAT
GAGATTGCAAACTTTATAAGTGAATCGTACCCGAATAATGAATCTGGGATTGTTTACTGC
TTTTCTAGGAAGGAATGTGAACAGGTCGCAAAAGAACTGTCTGAAAGGGGTATTTTAGCA
GATTATTATCATGCAGATATGGATGTTATTTCTCGTGAGAAAGTTCATATGCGCTGGAGC
AAAAGCAAATTGCAGGTCATTGTTGGAACAGTGGCGTTTGGAATGGGAATCAACAAGCCA
GATGTCAGGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATACTACCAGGAA
AGTGGAAGGGCAGGGAGAGATGGACTACCTTCAGAATGTATTCTGTATTATCGACCTGGT
GATGTTCCACGCCAAAGTTCAATGGTCTTCTATGAAAACTGTGGCCTGCAAAATCTTTAT
GACATAGTACGATATTGTCAGTCTAAGAGGAGCTGTCGTCGTGGTGCTTTCTTCCGGCAT
TTTGGAGAGGCTGCACAAGATTGCAATGGAATGTGTGACAACTGCACTTCTAGTCTTGAG
CTCAAGGAGATAGACGCTACCCGTATGATGATTTTACATCAGCTTGGAAATTTTACTGTT
GCACTGAATTACATACTTGATACTTGCATGTTCTTTAGTTTATATTTTTACAAAATGGTA
TTTTTGGGAG

Peptide Sequence

PEP ID

Os11t0708600-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:28991727:29000858:-1 gene:Os11g0708600 transcript:Os11t0708600-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Mediator 34_2 description:Similar to RECQL1 protein. (Os11t0708600-01);Similar to ATP-dependent DNA helicase, RecQ family protein, expressed. (Os11t0708600-02)
Sequence

MYEEDNIQGELLLVQAELDDIQGQISALIDRQEELYERESQLKAMLEVSKASNNTINNTP
SVGPKDWSGSFLWDSRADDVRFNVFGISSYRQNQREIINAIMSGRDVLVIMAAGGGKSLC
YQLPAVLHDGITLVVSPLLSLIQDQVMGLAALGIQAYMLASTTNKEVEKFVYKALDKGEG
ELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILK
VQFPSVPMIALTATATNKVQIDLIEMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVID
EIANFISESYPNNESGIVYCFSRKECEQVAKELSERGILADYYHADMDVISREKVHMRWS
KSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILYYRPG
DVPRQSSMVFYENCGLQNLYDIVRYCQSKRSCRRGAFFRHFGEAAQDCNGMCDNCTSSLE
LKEIDATRMMILHQLGNFTVALNYILDTCMFFSLYFYKMVFLG

Transcript Sequence

Transcript ID

Os11t0708600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:28991727:29000858:-1 gene:Os11g0708600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Mediator 34_2 description:Similar to RECQL1 protein. (Os11t0708600-01);Similar to ATP-dependent DNA helicase, RecQ family protein, expressed. (Os11t0708600-02)
Sequence

GTGGTGTGGTGCGGTGCGAGCCGGACGCAGGCGTCGCCTCGCCTCGTCGCGCGCGCGGCT
GTAGAGAGAGAAGCCTCGTAGACACCCTAGCCTCCTCCACCGGCCTTGCCCTCCTCGCGC
GCACGGCCTCCTCCACCGGCCTTGGCCTCCTCGCGCGCACGGCGGGCGGGGCGTGCAGGT
TTGGGGGAGTAGCGACGGCGACGCGCCCGACCTCCGTCCACCTGCCTCCATATCGGTTCG
GGCTGCAGCATGTATGAGGAAGACAACATTCAGGGAGAATTGTTACTCGTTCAGGCAGAA
CTTGATGACATCCAAGGGCAAATTAGTGCACTGATTGATCGTCAAGAGGAGCTGTATGAG
CGTGAATCACAGCTGAAAGCTATGCTCGAAGTATCTAAAGCATCCAACAACACAATCAAT
AATACCCCTTCAGTTGGTCCAAAAGATTGGTCTGGGAGCTTCTTATGGGACTCTCGGGCT
GATGATGTTCGTTTTAATGTATTTGGGATTTCTTCATACCGGCAGAATCAAAGAGAGATA
ATCAATGCCATCATGAGTGGAAGAGATGTACTGGTCATAATGGCTGCTGGTGGAGGGAAG
AGCCTCTGCTATCAACTACCTGCTGTACTTCATGATGGAATTACATTGGTTGTTAGTCCT
TTGCTTTCCCTTATCCAGGACCAGGTCATGGGACTAGCAGCTTTAGGTATACAAGCATAC
ATGCTGGCTTCAACTACCAATAAGGAAGTCGAGAAGTTCGTCTACAAGGCGCTTGATAAA
GGTGAAGGAGAACTGAAGATATTGTATGTGACACCTGAAAAGATATCCAAAAGTAAAAGG
TTCATGTCTAAGCTTGAGAAATGCCACCATGCAGGGCGTCTTTCTCTCATTGCAATAGAT
GAGGCACACTGCTGTAGTCAATGGGGCCATGATTTTCGCCCAGACTACAAGAATCTTGGC
ATTTTAAAGGTCCAGTTTCCCAGTGTTCCTATGATAGCTTTAACTGCAACTGCGACAAAT
AAAGTGCAAATTGATTTGATAGAGATGCTTCATATCCCTAGATGTGTCAAGTTTGTCAGC
ACAATTAACAGGCCCAACCTTTTCTATAAAGTATTTGAGAAATCACCAGTTGGAAAGGTC
GTCATTGATGAGATTGCAAACTTTATAAGTGAATCGTACCCGAATAATGAATCTGGGATT
GTTTACTGCTTTTCTAGGAAGGAATGTGAACAGGTCGCAAAAGAACTGTCTGAAAGGGGT
ATTTTAGCAGATTATTATCATGCAGATATGGATGTTATTTCTCGTGAGAAAGTTCATATG
CGCTGGAGCAAAAGCAAATTGCAGGTCATTGTTGGAACAGTGGCGTTTGGAATGGGAATC
AACAAGCCAGATGTCAGGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATAC
TACCAGGAAAGTGGAAGGGCAGGGAGAGATGGACTACCTTCAGAATGTATTCTGTATTAT
CGACCTGGTGATGTTCCACGCCAAAGTTCAATGGTCTTCTATGAAAACTGTGGCCTGCAA
AATCTTTATGACATAGTACGATATTGTCAGTCTAAGAGGAGCTGTCGTCGTGGTGCTTTC
TTCCGGCATTTTGGAGAGGCTGCACAAGATTGCAATGGAATGTGTGACAACTGCACTTCT
AGTCTTGAGCTCAAGGAGATAGACGCTACCCGTATGATGATTTTACATCAGCTTGGAAAT
TTTACTGTTGCACTGAATTACATACTTGATACTTGCATGTTCTTTAGTTTATATTTTTAC
AAAATGGTATTTTTGGGAG