Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0704800-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:28853530:28857356:-1 gene:Os11g0704800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 18, RHOMBOID 18 description:Similar to Membrane protein. (Os11t0704800-01)
Sequence

ATGAAGCCGTCTCCCGCCGCCAACCTGGACGTCCGCGTGGAGAGGCCTAGGCCACCGCCG
GTGCACCCTCACCGGCCGGGAAGTCTCAGGGCGCGCCCCTACTACCGCCGATGGACGCCC
TGGATCGTCGCCGCCATCGCCCTCTCCTGCGTCGTCGTCTTCCTCGTCTCCATGTATGTC
AACGATTGCCCCCGCCGCAACTCCGGGGACTGCGCCGCCGGCTTCCTCGGCCGCTTCGCC
TTCCAGCCGCTCAAGGAGAATCCCCTCCTCGGCCCTTCCTCCGCCACGTTACTGAAGATG
GGAGCTCTAGATGTAACTAAGGTTGTCCATGGTCACCAAGGATGGCGTCTAATTACATGC
ATCTGGCTTCATGCTGGAGTTGTTCATTTGCTCATCAATATGCTATGCCTTCTATTTATC
GGCATTCGACTTGAACAAGAGTTTGGGTTTGTGAGGATTGGTCTGGTTTATCTCATCTCT
GGTCTTGGTGGGAGCTTGATGTCTGCCCTCTTCATCCGATCAAGTATCTCTGTTGGTGCC
TCTGGTGCTTTGTTTGGATTGATTGGGTCCATGCTTTCTGAACTCATAACGAATTGGTCG
CTCTATGCAAACAAGGTGGCAGCACTACTAACACTAGTGTTTGTAATTGTGGTGAATTTG
GCTCTTGGGATACTTCCCAGGGTAGATAACTTTGCGCACATTGGGGGCCTTATATCCGGG
TTCCTTCTTGGATTTGTTATGTTTATTCGTCCACAGTTTGCATGGATTAATCAGAGAAGA
GTAGCACCTGGACAACAACCTGCTCCTGTGAAACGCAAGCACAAGACATACCAATATATA
CTGTGGTTAGCTGCTGCCATTATGCTAATTGTCGGATTTACAGTGGCTATAGTACTGCTT
CTCCGAGGATATAATGCAAACGACCACTGCTCTTGGTGTCACTATCTCAGCTGTGTTCCT
ACGAAAAGATGGAAATGCAACTCATCACCAACATATTGCACGGTAATGCAACAAGCGAAT
ACATTAAACTTGACATGTGAAGGCACAAACGTACACCGGAGCTACCTTATAGCGGATGCC
ACGCAAGATAAGATCAACCAACTCTGCAACCAACTTTGCAGTTAG

Peptide Sequence

PEP ID

Os11t0704800-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:28853530:28857356:-1 gene:Os11g0704800 transcript:Os11t0704800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 18, RHOMBOID 18 description:Similar to Membrane protein. (Os11t0704800-01)
Sequence

MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYV
NDCPRRNSGDCAAGFLGRFAFQPLKENPLLGPSSATLLKMGALDVTKVVHGHQGWRLITC
IWLHAGVVHLLINMLCLLFIGIRLEQEFGFVRIGLVYLISGLGGSLMSALFIRSSISVGA
SGALFGLIGSMLSELITNWSLYANKVAALLTLVFVIVVNLALGILPRVDNFAHIGGLISG
FLLGFVMFIRPQFAWINQRRVAPGQQPAPVKRKHKTYQYILWLAAAIMLIVGFTVAIVLL
LRGYNANDHCSWCHYLSCVPTKRWKCNSSPTYCTVMQQANTLNLTCEGTNVHRSYLIADA
TQDKINQLCNQLCS

Transcript Sequence

Transcript ID

Os11t0704800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:28853530:28857356:-1 gene:Os11g0704800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 18, RHOMBOID 18 description:Similar to Membrane protein. (Os11t0704800-01)
Sequence

CTCTCTCGCTGGCAAGCAAACTCCAATTCATTCATCAACCGCCGTCTCTTCCATTCTCAA
CTCCAATCCTCATTCCATTTCCATATTCCGTCTGTCTGTCTCCAAGTCCCATGAAGCCGT
CTCCCGCCGCCAACCTGGACGTCCGCGTGGAGAGGCCTAGGCCACCGCCGGTGCACCCTC
ACCGGCCGGGAAGTCTCAGGGCGCGCCCCTACTACCGCCGATGGACGCCCTGGATCGTCG
CCGCCATCGCCCTCTCCTGCGTCGTCGTCTTCCTCGTCTCCATGTATGTCAACGATTGCC
CCCGCCGCAACTCCGGGGACTGCGCCGCCGGCTTCCTCGGCCGCTTCGCCTTCCAGCCGC
TCAAGGAGAATCCCCTCCTCGGCCCTTCCTCCGCCACGTTACTGAAGATGGGAGCTCTAG
ATGTAACTAAGGTTGTCCATGGTCACCAAGGATGGCGTCTAATTACATGCATCTGGCTTC
ATGCTGGAGTTGTTCATTTGCTCATCAATATGCTATGCCTTCTATTTATCGGCATTCGAC
TTGAACAAGAGTTTGGGTTTGTGAGGATTGGTCTGGTTTATCTCATCTCTGGTCTTGGTG
GGAGCTTGATGTCTGCCCTCTTCATCCGATCAAGTATCTCTGTTGGTGCCTCTGGTGCTT
TGTTTGGATTGATTGGGTCCATGCTTTCTGAACTCATAACGAATTGGTCGCTCTATGCAA
ACAAGGTGGCAGCACTACTAACACTAGTGTTTGTAATTGTGGTGAATTTGGCTCTTGGGA
TACTTCCCAGGGTAGATAACTTTGCGCACATTGGGGGCCTTATATCCGGGTTCCTTCTTG
GATTTGTTATGTTTATTCGTCCACAGTTTGCATGGATTAATCAGAGAAGAGTAGCACCTG
GACAACAACCTGCTCCTGTGAAACGCAAGCACAAGACATACCAATATATACTGTGGTTAG
CTGCTGCCATTATGCTAATTGTCGGATTTACAGTGGCTATAGTACTGCTTCTCCGAGGAT
ATAATGCAAACGACCACTGCTCTTGGTGTCACTATCTCAGCTGTGTTCCTACGAAAAGAT
GGAAATGCAACTCATCACCAACATATTGCACGGTAATGCAACAAGCGAATACATTAAACT
TGACATGTGAAGGCACAAACGTACACCGGAGCTACCTTATAGCGGATGCCACGCAAGATA
AGATCAACCAACTCTGCAACCAACTTTGCAGTTAGCAGAATCTTGGTTCCCTCCCTGAGT
TGATCTGCTTGTAAAAATACTACTACTAGTAGTATATACATTTTTCATTCTTCGTGTACA
TGAATACATCATGTTTGACAGACAGAGAATAGAAAAGAATTTGCTGTACATATGAAGAAA
AGAATACTACACCGATTGAATCTATGCAGAGTGCCATTTATAT