Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0696400-00
CDS Infomation	cds chromosome:IRGSP-1.0:11:28483633:28486502:1 gene:Os11g0696400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 3, N-terminal domain containing protein. (Os11t0696400-00)
Sequence	ATGGCCTCCTCTTCTTCTCCATCCCATCTGCACCTCCTCATACTCTTCTTCTTCGCCATA GCCGCCTCCTCTCTATTGTCCACCGCGACCTCCACGCGCGCCTCGCCGGCCGACACTGCC GTCGGCGGCATCGCCGCCAAGGTGTACACCAAGGTGTGCGACGCGACGAGGTTCGCCGGC CTGGGCCTGAACATGACGGAGTTCCGCTACTGCGACGCGTCGCTGCCGTACGCCGACCGT GTCCGCGACCTCATCGGCCGGATGACCGTGGAGGAGAAGGTCGGCGCCCTCGGCGACTGG ACCGACGGCGCTGCCCGCATCGGCCTGCCGGCGTACAGGTGGTGGTCGGAGGCGCTGCAT GGCCTCTCCAGCACCGGCCCCACCACCAAGTTCGACGACCTCGCCACGCCGCACCTCCAC TCCGGCGTCTCCGCCGTCTACAACGCCACCGTCTTCGCCAACGTCATCAACAGCGCCGCC TCCTTCAACGAGACCCTCTGGAAATCCATCGGCCAGGCTGTGTCGACGGAGGCGAGGGCG ATGTACAACATGGGGAAGGGAGGGCTGACGTACTGGAGCCCCAACATCAACGTGGTGCGC GACCCGAGGTGGGGGAGAGCTCTGGAGACGCCCGGCGAGGACCCGTACGTCGTCGGCCGC TACGCCGTCAACTTCGTCCGCGGCATGCAGGACATCCCCGGGCACGAGGCGGTCGCCGCC GGCGGCGACCCTAACACGCGGCCGCTCAAGACGTCGGCGTGCTGCAAGCACTACGCCGCC TACGACCTCGACGACTGGCACAACCACACGCGGTTCGAGTTCGACGCGCGCGTCGATGAG CGCGACATGGTGGAGACGTTCCAGCGGCCATTCGAGATGTGCGTCCGCGACGGCGACGTG AGCAGCGTCATGTGCTCGTACAACCGCGTCAACGGCATCCCGGCGTGCGCCGACGCGCGC CTCCTGTCGCAGACCATCCGCCGCGACTGGGGCCTCCACGGCTACATCGTCTCCGACTGC GACGCCGTCCGCGTCATGACCGACAACGCCACCTGGCTCGGCTACACCGGCGCCGAGGCC AGCGCCGCCGCGCTCAAGGCTGGCCTCGACCTCGACTGCGGCGAGAGCTGGAAGAACGAC ACCGACGGCCACCCGCTCATGGACTTCCTCACCACCTACGGCATGGAGGCCGTCAACAAG GGCAAGATGAGGGAGTCCGACATTGACAACGCCCTCACCAACCAGTACATGACGCTCATG AGGCTCGGCTACTTCGACGACATCGCCCAGTACTCCTCCCTCGGCAGGCAGGACATCTGC ACCGACCAACACAAGACCCTCGCCCTTGACGGCGCACGCCAGGGCATCGTCCTCCTCAAG AACGACAACAAGCTGCTGCCGCTCGACGCCAACAAGGTTGGCTTCGTCAATGTCCGTGGC CCTCATGTCCAGGCCCCTGAGAAGATCATGGATGGAGACTACACAGGTCCTCCGTGCCGA TACGTGACGCCGCGCCAAGGTGTAAGCAAGTATGTGAGGTTTTCGCATCGCGCCAACACT ACCATCTACTTCGGAGGCCTAAACCTCAACATTGAGAGGGAGGGCAACGACAGGGAGGAC ATTCTCCTGCCCAAGAACCAGACAGAGGAGATCATCCGTGTCGCCAAGGCGTCGCCGAAC CCGATCATCCTTGTCATCTTGTCAGGAGGTGGCATCGACGTCTCCTTCGCGCAGAACAAC CCCAAGATCGGCGCCATCCTCTGGGCTGGGTACCCTGGTGGTGAAGGAGGCAATGCCATT GCAGATGTCATCTTTGGAAAACACAATCCAAGTGGGAGGCTGCCATTGACATGGTTCAAG AACAAGTACATCTACCAGCTGCCCATGACATCCATGGATCTCCGGCCGGTGGCGAAGCAC GGCTACCCTGGAAGGACATACAAGTTCTACGACGGCCCGGACGTGCTCTACCCGTTCGGC TACGGCCTCAGCTACACCAAGTTCCTCTACGAGATGGGCACCAACGGCACCGCCCTCATC GTCCCCGTCGCCGGCGGCCACTGCAAGAAGCTCAGCTACAAGTCCGGCGTGTCAACCGCA CCGGCATGCCCGGCGATCAACGTGAACGGCCACGTGTGCACCGAGACCGTCAGCTTCAAC GTGAGCGTCACCAACGGCGGCGACACGGGCGGCAGCCACCCGGTGATCGTGTTCAGCAAG CCGCCGGCGGAGGTGGACGACGCGCCGATGAAGCAGGTGGTGGCGTTCAAGAGCGTGTTC GTCCCGGCGTGGAGCACGGTAAGCGTGAGCTTCGAGCTCAACGTGTGCAAGGCGTTCGGC ATCGTCGAGAAGACGGCCTACACCGTCGTGCCGTCCGGCGTCAGCACCATCCTCGTCGAG AACGTCGACTCGTCGGTGTCTTTCCCAGTCAAGATCGACTTCGCTATTTAG

Peptide Sequence

PEP ID	Os11t0696400-00
PEP Infomation	pep chromosome:IRGSP-1.0:11:28483633:28486502:1 gene:Os11g0696400 transcript:Os11t0696400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 3, N-terminal domain containing protein. (Os11t0696400-00)
Sequence	MASSSSPSHLHLLILFFFAIAASSLLSTATSTRASPADTAVGGIAAKVYTKVCDATRFAG LGLNMTEFRYCDASLPYADRVRDLIGRMTVEEKVGALGDWTDGAARIGLPAYRWWSEALH GLSSTGPTTKFDDLATPHLHSGVSAVYNATVFANVINSAASFNETLWKSIGQAVSTEARA MYNMGKGGLTYWSPNINVVRDPRWGRALETPGEDPYVVGRYAVNFVRGMQDIPGHEAVAA GGDPNTRPLKTSACCKHYAAYDLDDWHNHTRFEFDARVDERDMVETFQRPFEMCVRDGDV SSVMCSYNRVNGIPACADARLLSQTIRRDWGLHGYIVSDCDAVRVMTDNATWLGYTGAEA SAAALKAGLDLDCGESWKNDTDGHPLMDFLTTYGMEAVNKGKMRESDIDNALTNQYMTLM RLGYFDDIAQYSSLGRQDICTDQHKTLALDGARQGIVLLKNDNKLLPLDANKVGFVNVRG PHVQAPEKIMDGDYTGPPCRYVTPRQGVSKYVRFSHRANTTIYFGGLNLNIEREGNDRED ILLPKNQTEEIIRVAKASPNPIILVILSGGGIDVSFAQNNPKIGAILWAGYPGGEGGNAI ADVIFGKHNPSGRLPLTWFKNKYIYQLPMTSMDLRPVAKHGYPGRTYKFYDGPDVLYPFG YGLSYTKFLYEMGTNGTALIVPVAGGHCKKLSYKSGVSTAPACPAINVNGHVCTETVSFN VSVTNGGDTGGSHPVIVFSKPPAEVDDAPMKQVVAFKSVFVPAWSTVSVSFELNVCKAFG IVEKTAYTVVPSGVSTILVENVDSSVSFPVKIDFAI

Transcript Sequence

Transcript ID	Os11t0696400-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:28483633:28486502:1 gene:Os11g0696400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 3, N-terminal domain containing protein. (Os11t0696400-00)
Sequence	TCAATCCACCGAAACACCACGTACGTAGAGTAGATCAGCGAGAATGGCCTCCTCTTCTTC TCCATCCCATCTGCACCTCCTCATACTCTTCTTCTTCGCCATAGCCGCCTCCTCTCTATT GTCCACCGCGACCTCCACGCGCGCCTCGCCGGCCGACACTGCCGTCGGCGGCATCGCCGC CAAGGTGTACACCAAGGTGTGCGACGCGACGAGGTTCGCCGGCCTGGGCCTGAACATGAC GGAGTTCCGCTACTGCGACGCGTCGCTGCCGTACGCCGACCGTGTCCGCGACCTCATCGG CCGGATGACCGTGGAGGAGAAGGTCGGCGCCCTCGGCGACTGGACCGACGGCGCTGCCCG CATCGGCCTGCCGGCGTACAGGTGGTGGTCGGAGGCGCTGCATGGCCTCTCCAGCACCGG CCCCACCACCAAGTTCGACGACCTCGCCACGCCGCACCTCCACTCCGGCGTCTCCGCCGT CTACAACGCCACCGTCTTCGCCAACGTCATCAACAGCGCCGCCTCCTTCAACGAGACCCT CTGGAAATCCATCGGCCAGGCTGTGTCGACGGAGGCGAGGGCGATGTACAACATGGGGAA GGGAGGGCTGACGTACTGGAGCCCCAACATCAACGTGGTGCGCGACCCGAGGTGGGGGAG AGCTCTGGAGACGCCCGGCGAGGACCCGTACGTCGTCGGCCGCTACGCCGTCAACTTCGT CCGCGGCATGCAGGACATCCCCGGGCACGAGGCGGTCGCCGCCGGCGGCGACCCTAACAC GCGGCCGCTCAAGACGTCGGCGTGCTGCAAGCACTACGCCGCCTACGACCTCGACGACTG GCACAACCACACGCGGTTCGAGTTCGACGCGCGCGTCGATGAGCGCGACATGGTGGAGAC GTTCCAGCGGCCATTCGAGATGTGCGTCCGCGACGGCGACGTGAGCAGCGTCATGTGCTC GTACAACCGCGTCAACGGCATCCCGGCGTGCGCCGACGCGCGCCTCCTGTCGCAGACCAT CCGCCGCGACTGGGGCCTCCACGGCTACATCGTCTCCGACTGCGACGCCGTCCGCGTCAT GACCGACAACGCCACCTGGCTCGGCTACACCGGCGCCGAGGCCAGCGCCGCCGCGCTCAA GGCTGGCCTCGACCTCGACTGCGGCGAGAGCTGGAAGAACGACACCGACGGCCACCCGCT CATGGACTTCCTCACCACCTACGGCATGGAGGCCGTCAACAAGGGCAAGATGAGGGAGTC CGACATTGACAACGCCCTCACCAACCAGTACATGACGCTCATGAGGCTCGGCTACTTCGA CGACATCGCCCAGTACTCCTCCCTCGGCAGGCAGGACATCTGCACCGACCAACACAAGAC CCTCGCCCTTGACGGCGCACGCCAGGGCATCGTCCTCCTCAAGAACGACAACAAGCTGCT GCCGCTCGACGCCAACAAGGTTGGCTTCGTCAATGTCCGTGGCCCTCATGTCCAGGCCCC TGAGAAGATCATGGATGGAGACTACACAGGTCCTCCGTGCCGATACGTGACGCCGCGCCA AGGTGTAAGCAAGTATGTGAGGTTTTCGCATCGCGCCAACACTACCATCTACTTCGGAGG CCTAAACCTCAACATTGAGAGGGAGGGCAACGACAGGGAGGACATTCTCCTGCCCAAGAA CCAGACAGAGGAGATCATCCGTGTCGCCAAGGCGTCGCCGAACCCGATCATCCTTGTCAT CTTGTCAGGAGGTGGCATCGACGTCTCCTTCGCGCAGAACAACCCCAAGATCGGCGCCAT CCTCTGGGCTGGGTACCCTGGTGGTGAAGGAGGCAATGCCATTGCAGATGTCATCTTTGG AAAACACAATCCAAGTGGGAGGCTGCCATTGACATGGTTCAAGAACAAGTACATCTACCA GCTGCCCATGACATCCATGGATCTCCGGCCGGTGGCGAAGCACGGCTACCCTGGAAGGAC ATACAAGTTCTACGACGGCCCGGACGTGCTCTACCCGTTCGGCTACGGCCTCAGCTACAC CAAGTTCCTCTACGAGATGGGCACCAACGGCACCGCCCTCATCGTCCCCGTCGCCGGCGG CCACTGCAAGAAGCTCAGCTACAAGTCCGGCGTGTCAACCGCACCGGCATGCCCGGCGAT CAACGTGAACGGCCACGTGTGCACCGAGACCGTCAGCTTCAACGTGAGCGTCACCAACGG CGGCGACACGGGCGGCAGCCACCCGGTGATCGTGTTCAGCAAGCCGCCGGCGGAGGTGGA CGACGCGCCGATGAAGCAGGTGGTGGCGTTCAAGAGCGTGTTCGTCCCGGCGTGGAGCAC GGTAAGCGTGAGCTTCGAGCTCAACGTGTGCAAGGCGTTCGGCATCGTCGAGAAGACGGC CTACACCGTCGTGCCGTCCGGCGTCAGCACCATCCTCGTCGAGAACGTCGACTCGTCGGT GTCTTTCCCAGTCAAGATCGACTTCGCTATTTAG