Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0684700-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:27703769:27707310:-1 gene:Os11g0684700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NB-ARC domain containing protein, expressed. (Os11t0684700-01)
Sequence	ATGGCGTCTGCGGCGGCGAGCGCTTTCTTGGAGGCGGTCATGGGGAAGCTGTTCATGGTG CTGGACAAGGAGTACAACAAGCACAAGGCCCTCGAGCAAGAGGTCGCCTCCCTCCAGCAG GAGTTCCGCATGGTCGCCGCCGCCATGGACGACCAGCTCCTCTCCATGGGGAGGAGCGAC GCCCACGCCCGCACGGCCGTCGCGCGGCTGCACGCCGAGGAGATGCTCGACCTCGAGCAC GACATCGAGGACTGCGTCGACCGCTTCACGCACCTCCTCACCTGCAGCCACAGCAATCCC AGCGGAAGAACATCCCTGGTTTGCCGAGTCAAGCACGAGGTCAAGAAGGTCCAGAGCCGC TCGAGCTTCAGTGAAGAGATCCAGAAGCTGAGGAGGCGCCTCAGCGAAGCGCAGCAGCGG GTCATCAGCAACATCATCAATCCGAATCCGCCGCCTAGTGGATTCGAGCCGAGGTCGTCG TCATCGACTCCGGCTCGCGCCGCGTGCGGTCCTCCGGTGGGCATCGGGGAGCCCATGGAG GAGCTCCTCTCGCTGCTAGACGAAGTGGAGGGCGAGCCGGAGCAGGTGAGGGTCATCTCC ATCGTGGGGTTCGGTGGATTGGGGAAGACCACCCTCGCCAAGGCGGTCTACGATGACCCT CGCACAAAGGAGAAATTCTACCACCGTGCGTGGATCGCCGCCGTTGGCTCGCCGGAGACG AGCGACTGGATGAGGGGGATCCTGCGTGATGTACTCCGGCAAGTGCGTCCCGGTGACGCC ATGGATGTGGATGGCCAGCATCTCGAAGCCTCGCTCAGAGAGTACCTCAAGGACAAGAGG TATTTGATTGTCATCGATGACATAGATGTGGATCAACTTAGAATCATAGAGTCGATCTTT CCAGACAATGGTACAGGCAGCAGGATAATAGTGACGACAGATAATCAGCAAGTAGCTAAT ACGTGCAGCCATGGCAACGGTTATGTGTACCAAATGAAGACCCTTGGCAAAGAGGACTCC AAGAAACTAGCATTTTCAGGGCTCAGATCAGTTGAACCGGGGCAAGGTCCAGCATCATTA TTAGCGAAATGTGATGGCCTTCCTCTGGCTCTGGTTAGTGTCTCTGATTATCTGAAGAGC TCAAGTGAGCCCACAGGAGAGCTGTGTGCAGAGCTGTGCCTCAACCTTGGTTCTGATCTG AAAGAGGATGGCCATTACAGCTTTGCACAACTCAGGAAGGTGCTCCTTGACAACTATGAC AGTTTTTCTGGCTATACTCTGAGCTGCTTGCTGTATCTTGGTATATTCCCAAACAATCGT CCTCTCAAGAAGAAAGTTGTAATCAGGCGGTGGTTAGCAGAAGGATATGCACGGAGCGAT GACCCTCGTCGTAGCGAAGAGTACACTGCAGATAAGAATTTCAGAAAGCTTATTGACCGG AATATCATTCAGCCTGTTGACACGAGGAACAATTCTGAAGTGAAGACGTGCAAAACTCAT GGAATCATGCACGAGTTTTTGCTGAACAAGTCCTTGGCCCAGAGATTCATCGGGACATCA TTGCATGATCATCCAAGAGTTGGAATCAATACTAGCAATGCGCGCCACCTTTCTGTCGAT GCTGCTAAACAGACAGAATGCGTGGCATCTGACGAAGAATTATCTCGAGTCCGATCTCTG ACAATCTTTGGGGATGCAGGTGATACAATTTCTTGTCTTCGCAAGTGCAAGCTTCTACGA GTCTTGGATCTACAAGAATGCAATGGTTTGAATGACGATCATCTGAAACACATGTATGAA CTGTGGCATCTGAAATACCTGAGCCTTGGGGGCTATATCAATGAGCTTCCAAGGAGTATT CAAGGGCTGCATTGTTTAGAGACACTGGATTTAAGGAGAACGGAGATCAAGTTTTTGCCC ATTGAAGCTATAATGCTGCCCCACTTAGCTCACTTGTTTGGAAAGTTCATGCTTCACAAA GATGATCTAAAAAATGCGAAGAAGATGAGTAAACTACAAAAATTCTTTTCATCAAATAAG AGCAACTTGAAAACTTTAGCAGGATTTATCACTGAAGAAGGAAAGGAATTTCTGCAACTT ATTGGTCATATGAAAAAACTGAGGAAGGTTAAGATATGGTGCAAGCATGTTGAAGGTAGC AGTAATTACATTGCTGATCTTTCAAAGGCCATTCAGGAATTTACCAAGACTCCCATTGAC ATGGACCGAGTCCGTTTTCTCTCACTTGATTCCGAAGAATGCTCTGAAAATTTCCTGAGT TCGATTCATTTGGAGCCATGCTCTGAAGATTACAAATATACTCTGAAGTCGCTGAAGCTA CATGGCAACTTACTCCAGTTGCCCCTGTTTGTTACCTTGCTGTCAGGTCTCATTGAGCTG TGCATTTCATCAGCTACACTGACACAAGAGCATCTGTCAGCACTGACCAATCTGAACAGC CTGCTTTACCTCAAATTGGTTGCAGACAAGCTCGAGAATTTCGAGATAAAACTAGGAGCA TTTCTGAGCCTGCGGCGCCTATGCTTTGTGGTGAAAAATGCGGCTTCAGCACTACCAAAG TTCGAGCAAGGAGCTATGCCAAACCTTGTTTCACTCCAGCTGCTCTGTCAAGGACTAGTC GGTCTTTCTGGTATCGAGATCAGACACCTGAAACACCTCAAGGAAGTCACGATTGACTCT AGAGTGACTGCGCAAACAAGGCAAGATTGGGAACAGGCTGCAAAGAACCACCCAAACAGG CCTAGAGTTTTGTTGCTCGGAGAGGTTCATTCGGTGGAAAGCGAGGAACCGGGAAGACCA ATGGAGAAGAGGAGAATTTGTGTAGGCCAGGCAAGTTCAGAAGATGAACGGGATTCTAGC CTTAAGAGGATGAGACTTTCAGATCCTTCTTCTTCACGGCTTCAGGTGATCGGCCATCCG CATCCGGTGGTGGTAACGGCCACCGAAGCAGCATCCCAGCCTTCCATGGCAAATTAA

Peptide Sequence

PEP ID	Os11t0684700-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:27703769:27707310:-1 gene:Os11g0684700 transcript:Os11t0684700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NB-ARC domain containing protein, expressed. (Os11t0684700-01)
Sequence	MASAAASAFLEAVMGKLFMVLDKEYNKHKALEQEVASLQQEFRMVAAAMDDQLLSMGRSD AHARTAVARLHAEEMLDLEHDIEDCVDRFTHLLTCSHSNPSGRTSLVCRVKHEVKKVQSR SSFSEEIQKLRRRLSEAQQRVISNIINPNPPPSGFEPRSSSSTPARAACGPPVGIGEPME ELLSLLDEVEGEPEQVRVISIVGFGGLGKTTLAKAVYDDPRTKEKFYHRAWIAAVGSPET SDWMRGILRDVLRQVRPGDAMDVDGQHLEASLREYLKDKRYLIVIDDIDVDQLRIIESIF PDNGTGSRIIVTTDNQQVANTCSHGNGYVYQMKTLGKEDSKKLAFSGLRSVEPGQGPASL LAKCDGLPLALVSVSDYLKSSSEPTGELCAELCLNLGSDLKEDGHYSFAQLRKVLLDNYD SFSGYTLSCLLYLGIFPNNRPLKKKVVIRRWLAEGYARSDDPRRSEEYTADKNFRKLIDR NIIQPVDTRNNSEVKTCKTHGIMHEFLLNKSLAQRFIGTSLHDHPRVGINTSNARHLSVD AAKQTECVASDEELSRVRSLTIFGDAGDTISCLRKCKLLRVLDLQECNGLNDDHLKHMYE LWHLKYLSLGGYINELPRSIQGLHCLETLDLRRTEIKFLPIEAIMLPHLAHLFGKFMLHK DDLKNAKKMSKLQKFFSSNKSNLKTLAGFITEEGKEFLQLIGHMKKLRKVKIWCKHVEGS SNYIADLSKAIQEFTKTPIDMDRVRFLSLDSEECSENFLSSIHLEPCSEDYKYTLKSLKL HGNLLQLPLFVTLLSGLIELCISSATLTQEHLSALTNLNSLLYLKLVADKLENFEIKLGA FLSLRRLCFVVKNAASALPKFEQGAMPNLVSLQLLCQGLVGLSGIEIRHLKHLKEVTIDS RVTAQTRQDWEQAAKNHPNRPRVLLLGEVHSVESEEPGRPMEKRRICVGQASSEDERDSS LKRMRLSDPSSSRLQVIGHPHPVVVTATEAASQPSMAN

Transcript Sequence

Transcript ID	Os11t0684700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:27703769:27707310:-1 gene:Os11g0684700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NB-ARC domain containing protein, expressed. (Os11t0684700-01)
Sequence	GTGGAAGACTTGGAGGGTGCTTGCTCGCAGCTGCTTCTCCCTCAGCCAATCTGTCTGATC CAGCAAAGTAATCGTATCGAGAGGCACGCCGACGTCCATGGCGTCTGCGGCGGCGAGCGC TTTCTTGGAGGCGGTCATGGGGAAGCTGTTCATGGTGCTGGACAAGGAGTACAACAAGCA CAAGGCCCTCGAGCAAGAGGTCGCCTCCCTCCAGCAGGAGTTCCGCATGGTCGCCGCCGC CATGGACGACCAGCTCCTCTCCATGGGGAGGAGCGACGCCCACGCCCGCACGGCCGTCGC GCGGCTGCACGCCGAGGAGATGCTCGACCTCGAGCACGACATCGAGGACTGCGTCGACCG CTTCACGCACCTCCTCACCTGCAGCCACAGCAATCCCAGCGGAAGAACATCCCTGGTTTG CCGAGTCAAGCACGAGGTCAAGAAGGTCCAGAGCCGCTCGAGCTTCAGTGAAGAGATCCA GAAGCTGAGGAGGCGCCTCAGCGAAGCGCAGCAGCGGGTCATCAGCAACATCATCAATCC GAATCCGCCGCCTAGTGGATTCGAGCCGAGGTCGTCGTCATCGACTCCGGCTCGCGCCGC GTGCGGTCCTCCGGTGGGCATCGGGGAGCCCATGGAGGAGCTCCTCTCGCTGCTAGACGA AGTGGAGGGCGAGCCGGAGCAGGTGAGGGTCATCTCCATCGTGGGGTTCGGTGGATTGGG GAAGACCACCCTCGCCAAGGCGGTCTACGATGACCCTCGCACAAAGGAGAAATTCTACCA CCGTGCGTGGATCGCCGCCGTTGGCTCGCCGGAGACGAGCGACTGGATGAGGGGGATCCT GCGTGATGTACTCCGGCAAGTGCGTCCCGGTGACGCCATGGATGTGGATGGCCAGCATCT CGAAGCCTCGCTCAGAGAGTACCTCAAGGACAAGAGGTATTTGATTGTCATCGATGACAT AGATGTGGATCAACTTAGAATCATAGAGTCGATCTTTCCAGACAATGGTACAGGCAGCAG GATAATAGTGACGACAGATAATCAGCAAGTAGCTAATACGTGCAGCCATGGCAACGGTTA TGTGTACCAAATGAAGACCCTTGGCAAAGAGGACTCCAAGAAACTAGCATTTTCAGGGCT CAGATCAGTTGAACCGGGGCAAGGTCCAGCATCATTATTAGCGAAATGTGATGGCCTTCC TCTGGCTCTGGTTAGTGTCTCTGATTATCTGAAGAGCTCAAGTGAGCCCACAGGAGAGCT GTGTGCAGAGCTGTGCCTCAACCTTGGTTCTGATCTGAAAGAGGATGGCCATTACAGCTT TGCACAACTCAGGAAGGTGCTCCTTGACAACTATGACAGTTTTTCTGGCTATACTCTGAG CTGCTTGCTGTATCTTGGTATATTCCCAAACAATCGTCCTCTCAAGAAGAAAGTTGTAAT CAGGCGGTGGTTAGCAGAAGGATATGCACGGAGCGATGACCCTCGTCGTAGCGAAGAGTA CACTGCAGATAAGAATTTCAGAAAGCTTATTGACCGGAATATCATTCAGCCTGTTGACAC GAGGAACAATTCTGAAGTGAAGACGTGCAAAACTCATGGAATCATGCACGAGTTTTTGCT GAACAAGTCCTTGGCCCAGAGATTCATCGGGACATCATTGCATGATCATCCAAGAGTTGG AATCAATACTAGCAATGCGCGCCACCTTTCTGTCGATGCTGCTAAACAGACAGAATGCGT GGCATCTGACGAAGAATTATCTCGAGTCCGATCTCTGACAATCTTTGGGGATGCAGGTGA TACAATTTCTTGTCTTCGCAAGTGCAAGCTTCTACGAGTCTTGGATCTACAAGAATGCAA TGGTTTGAATGACGATCATCTGAAACACATGTATGAACTGTGGCATCTGAAATACCTGAG CCTTGGGGGCTATATCAATGAGCTTCCAAGGAGTATTCAAGGGCTGCATTGTTTAGAGAC ACTGGATTTAAGGAGAACGGAGATCAAGTTTTTGCCCATTGAAGCTATAATGCTGCCCCA CTTAGCTCACTTGTTTGGAAAGTTCATGCTTCACAAAGATGATCTAAAAAATGCGAAGAA GATGAGTAAACTACAAAAATTCTTTTCATCAAATAAGAGCAACTTGAAAACTTTAGCAGG ATTTATCACTGAAGAAGGAAAGGAATTTCTGCAACTTATTGGTCATATGAAAAAACTGAG GAAGGTTAAGATATGGTGCAAGCATGTTGAAGGTAGCAGTAATTACATTGCTGATCTTTC AAAGGCCATTCAGGAATTTACCAAGACTCCCATTGACATGGACCGAGTCCGTTTTCTCTC ACTTGATTCCGAAGAATGCTCTGAAAATTTCCTGAGTTCGATTCATTTGGAGCCATGCTC TGAAGATTACAAATATACTCTGAAGTCGCTGAAGCTACATGGCAACTTACTCCAGTTGCC CCTGTTTGTTACCTTGCTGTCAGGTCTCATTGAGCTGTGCATTTCATCAGCTACACTGAC ACAAGAGCATCTGTCAGCACTGACCAATCTGAACAGCCTGCTTTACCTCAAATTGGTTGC AGACAAGCTCGAGAATTTCGAGATAAAACTAGGAGCATTTCTGAGCCTGCGGCGCCTATG CTTTGTGGTGAAAAATGCGGCTTCAGCACTACCAAAGTTCGAGCAAGGAGCTATGCCAAA CCTTGTTTCACTCCAGCTGCTCTGTCAAGGACTAGTCGGTCTTTCTGGTATCGAGATCAG ACACCTGAAACACCTCAAGGAAGTCACGATTGACTCTAGAGTGACTGCGCAAACAAGGCA AGATTGGGAACAGGCTGCAAAGAACCACCCAAACAGGCCTAGAGTTTTGTTGCTCGGAGA GGTTCATTCGGTGGAAAGCGAGGAACCGGGAAGACCAATGGAGAAGAGGAGAATTTGTGT AGGCCAGGCAAGTTCAGAAGATGAACGGGATTCTAGCCTTAAGAGGATGAGACTTTCAGA TCCTTCTTCTTCACGGCTTCAGGTGATCGGCCATCCGCATCCGGTGGTGGTAACGGCCAC CGAAGCAGCATCCCAGCCTTCCATGGCAAATTAATCTCTAGCACATTTATACAATTTCGG CAGATGGACTTCAATAAGGATTACAATATTAAGGTGTAGAATTGACTTTTTGCATAGTTA CATATATGATGTATCCTATATATCGAGATACCCAAATTATGAACTGTTTTTTGTTTAAAA A