Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0683800-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:27660471:27662609:-1 gene:Os11g0683800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 34 description:Pectin lyase fold/virulence factor domain containing protein. (Os11t0683800-01);Pectin lyase fold/virulence factor domain containing protein. (Os11t0683800-02)
Sequence

ATGATCGAAGCGAGGAAGAAGAAGAAGAAGAAGCTGCAGTTGCAGCAGCAGCAGCAGCAA
CTAGTAACTAATAAAGTGATGACGATGGATCGTCCCAACGTCGCCGTGGCCGCGGTGGGG
CTGCTAGTGGCGGCGGTGGCGGCGACGCTGCCGGCGCCGTCGTGGGGGCAGCAGCAGCCA
GCCAACAAGCTCATCACCAGCACCTCCGGCTCCGGCAAAGGGTTGTCCAAGTGGCTGGCG
ATGAACCAGGAGGAGTACGTGGAGAAGAAGGCGCTGCACACCATGGCCACCGCGGAGGAG
CTCGGCGGGAAGAAGCTGGACGCGAACCTGACGGCGGCGGAGGAGGCCAAGGTGACGTGG
GTGATCGACCCCAAGGGGACGCCGGGCGACACCACCTTCACCACCATCACGGCGGCGCTG
GAGAAGGTCCCCGAGGGGAACAAGAAGCGCGTCATCCTCGACCTCAAGCCCGGCGCCGAG
TTCCGGGAGAAGATCTTCCTCAACCTCAGCAAGCCCTTCATCACCTTCAAGTCCGACCCC
AAGAACCCGGCGGTGATCGCCTGGAGCGACACGGCGGCGACCAGGGGCAAGGACGGCAAG
CCCGTCGGCACCGTGGGGAGCACCACCGTCGCCATCGAGTCCGACTACTTCGTGGCGCAT
GGCGTCGTGTTCAAGAACGACGCGCCGATGGCCAAGCCCGGCGCCGAGGGCGGCCAGGCG
GTGGCGCTCCGCCTCTTCGGCACCAAGGCGGCCATCTACAACTGCACCATCGACGGCGGC
CAGGACACGCTGTACGACCACAAGGGCCTCCACTACATCAAGGATTGCCTCATCATGGGC
AGCGTCGACTTCATCTTCGGGTTCGGGAGATCGTACTACGAGGGCTGCACCATCGTCTCC
GTCACCAAGGAGGTGTCCGTGCTGACGGCGCAGCAGAGGAGCAAGACCATCGAGGGCGCC
CTCGAGAGCGGCTTCTCCTTCAAGAACTGCAGCATCAAGGGAGAAGGGCAGATCTACCTG
GGGCGAGCATGGGGGGAATCGTCGCGGGTGGTGTACGCCTACACCGACATGTCCAAGGAG
GTGGTGCCCGTGGGTTGGGACGGCTGGAACATCGCCAAGCCGGAGAGCAGCGGGATCTAC
TACGGCGAGTTCAAGTGCACCGGCCCCGGCTCCGACGCCAAGAAGAGGGTGGGTTGGGCG
CTCGACCTCACCGAGGAGCAGGCCAAGCCCTTCATCGGCACGCACTACATCTACGGCGAC
TCCTGGCTCATCCCACCAGACGGGACATCAACGTCATCTAGCTCAGCTTCAACGTCGAGC
AACTCAACCGCGGAAGCACCGACGGCGAGTAGTAACTCAACTGCATCGGCTAATAAAAAG
GAAAGCAATTCAACTGCAGAAGCGCCGACGGCGACTAGCTACTCAACTGCGTCAGCGACG
ACGAGTAATTCCACTGCGTCAGCGAAGGCGACTAATTACTCGAGTTCAAGTCCACCGGCA
AAAGGCAAGTAG

Peptide Sequence

PEP ID

Os11t0683800-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:27660471:27662609:-1 gene:Os11g0683800 transcript:Os11t0683800-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 34 description:Pectin lyase fold/virulence factor domain containing protein. (Os11t0683800-01);Pectin lyase fold/virulence factor domain containing protein. (Os11t0683800-02)
Sequence

MIEARKKKKKKLQLQQQQQQLVTNKVMTMDRPNVAVAAVGLLVAAVAATLPAPSWGQQQP
ANKLITSTSGSGKGLSKWLAMNQEEYVEKKALHTMATAEELGGKKLDANLTAAEEAKVTW
VIDPKGTPGDTTFTTITAALEKVPEGNKKRVILDLKPGAEFREKIFLNLSKPFITFKSDP
KNPAVIAWSDTAATRGKDGKPVGTVGSTTVAIESDYFVAHGVVFKNDAPMAKPGAEGGQA
VALRLFGTKAAIYNCTIDGGQDTLYDHKGLHYIKDCLIMGSVDFIFGFGRSYYEGCTIVS
VTKEVSVLTAQQRSKTIEGALESGFSFKNCSIKGEGQIYLGRAWGESSRVVYAYTDMSKE
VVPVGWDGWNIAKPESSGIYYGEFKCTGPGSDAKKRVGWALDLTEEQAKPFIGTHYIYGD
SWLIPPDGTSTSSSSASTSSNSTAEAPTASSNSTASANKKESNSTAEAPTATSYSTASAT
TSNSTASAKATNYSSSSPPAKGK

Transcript Sequence

Transcript ID

Os11t0683800-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:27660471:27662609:-1 gene:Os11g0683800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 34 description:Pectin lyase fold/virulence factor domain containing protein. (Os11t0683800-01);Pectin lyase fold/virulence factor domain containing protein. (Os11t0683800-02)
Sequence

ATGCATCGCCATGATCGAAGCGAGGAAGAAGAAGAAGAAGAAGCTGCAGTTGCAGCAGCA
GCAGCAGCAACTAGTAACTAATAAAGTGATGACGATGGATCGTCCCAACGTCGCCGTGGC
CGCGGTGGGGCTGCTAGTGGCGGCGGTGGCGGCGACGCTGCCGGCGCCGTCGTGGGGGCA
GCAGCAGCCAGCCAACAAGCTCATCACCAGCACCTCCGGCTCCGGCAAAGGGTTGTCCAA
GTGGCTGGCGATGAACCAGGAGGAGTACGTGGAGAAGAAGGCGCTGCACACCATGGCCAC
CGCGGAGGAGCTCGGCGGGAAGAAGCTGGACGCGAACCTGACGGCGGCGGAGGAGGCCAA
GGTGACGTGGGTGATCGACCCCAAGGGGACGCCGGGCGACACCACCTTCACCACCATCAC
GGCGGCGCTGGAGAAGGTCCCCGAGGGGAACAAGAAGCGCGTCATCCTCGACCTCAAGCC
CGGCGCCGAGTTCCGGGAGAAGATCTTCCTCAACCTCAGCAAGCCCTTCATCACCTTCAA
GTCCGACCCCAAGAACCCGGCGGTGATCGCCTGGAGCGACACGGCGGCGACCAGGGGCAA
GGACGGCAAGCCCGTCGGCACCGTGGGGAGCACCACCGTCGCCATCGAGTCCGACTACTT
CGTGGCGCATGGCGTCGTGTTCAAGAACGACGCGCCGATGGCCAAGCCCGGCGCCGAGGG
CGGCCAGGCGGTGGCGCTCCGCCTCTTCGGCACCAAGGCGGCCATCTACAACTGCACCAT
CGACGGCGGCCAGGACACGCTGTACGACCACAAGGGCCTCCACTACATCAAGGATTGCCT
CATCATGGGCAGCGTCGACTTCATCTTCGGGTTCGGGAGATCGTACTACGAGGGCTGCAC
CATCGTCTCCGTCACCAAGGAGGTGTCCGTGCTGACGGCGCAGCAGAGGAGCAAGACCAT
CGAGGGCGCCCTCGAGAGCGGCTTCTCCTTCAAGAACTGCAGCATCAAGGGAGAAGGGCA
GATCTACCTGGGGCGAGCATGGGGGGAATCGTCGCGGGTGGTGTACGCCTACACCGACAT
GTCCAAGGAGGTGGTGCCCGTGGGTTGGGACGGCTGGAACATCGCCAAGCCGGAGAGCAG
CGGGATCTACTACGGCGAGTTCAAGTGCACCGGCCCCGGCTCCGACGCCAAGAAGAGGGT
GGGTTGGGCGCTCGACCTCACCGAGGAGCAGGCCAAGCCCTTCATCGGCACGCACTACAT
CTACGGCGACTCCTGGCTCATCCCACCAGACGGGACATCAACGTCATCTAGCTCAGCTTC
AACGTCGAGCAACTCAACCGCGGAAGCACCGACGGCGAGTAGTAACTCAACTGCATCGGC
TAATAAAAAGGAAAGCAATTCAACTGCAGAAGCGCCGACGGCGACTAGCTACTCAACTGC
GTCAGCGACGACGAGTAATTCCACTGCGTCAGCGAAGGCGACTAATTACTCGAGTTCAAG
TCCACCGGCAAAAGGCAAGTAGTTAATACAAGTGCAGCGGCGACGACGGCGCCGACGCGA
TGAATCGCGTTCATTGGGGCCAACCAATTCTGTTTTGGAAGCCCGTTTAATTGTTCATTC
TTTGTGTCAATTTGGGCCGGATTAATCAATCGGCCGGCTACTTAGATGTTTCACGTACGT
GTAACAGTTGTATTTTCTTCCCATTTCGTTTGGGTCTTTTATCAGTGTACGCATCTTCAA
AACTATAGTGAATTTTACACATGTTTTCCTTTT