Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0683700-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:27656251:27658409:-1 gene:Os11g0683700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 33 description:Pectin lyase fold domain containing protein. (Os11t0683700-01)
Sequence	ATGGATCGTCCCAACCTCGCCGTGGCCGTGGTGGGGCTACTGGCGGTGGTGGCGGCGACG CTGCCGGCGCCGTCATGGCAGTTCTTCGACCTATTCCTCCCCGCCGGCCCCAGCCACCGC TCCTCCGGCGGAGGGTTTGGCAAGTGGGTGCTGATGAACCACGAGGAGTACGTCGAGAAG AAGTCGCTGTACGCCATGAAGGCCGCCGGCGACATCGGCGGGAAGACCATCGACGCGAGC CTCTCGGCGGCGGAGGAGGCCAAGGTGACGTGGGTGGTTGACCCCAAGGGGACGCCGGGC GACACCACCTTCACCACCATCGCGGCGGCGCTCGAGAAGGTCCCCGAGGGGAACACCAAG CGCGTCATCCTCGACCTCAAGCCCGGCGCCGAGTTCCGGGAGAAGCTCCTCCTCAACATC ACTAAGCCCTACATCACCTTCAAGTCCGACCCTGCCAACCCGGCGGTGATCGCCTGGAAC GACATGGCTGCCACCAGGGGCAAGGACGGCAAGCCCGTCGGCACCGTCGGGAGCACCACC GTCGCCGTCGAGTCCGACTACTTCATGGCCTACGGCGTCGTCTTCAAGAACGACGCGCCG CTGGCCAAGCCGGGTGCCGAGGGTGGCCAGGCGGTGGCGCTCCGCCTGTTCGGCACCAAG GCAGCCATCTACAACTGCACCATCGACGGCGGGCAGGACACCCTATACGATCACAAGGGA CTCCACTACATCAAGGATAGCCTCATCATGGGCAGCGTCGACTTCATCTTTGGATTCGGG AGATCACTCTACGAGGGCTGCACCATCGTCTCCGTCACCAAGGAGGTGTCCGTGCTGACG GCGCAGCAGAGGACCAAGACCATCGAGGGCGCCATAGAAAGTGGCTTCTCCTTCAAGAAC TGCAGCATCAAAGGACAAGGGCAGATCTACCTCGGCCGGGCATGGGGGGATTCGTCGCGG GTGGTGTACTCCTACACGGACATGTCCAAGGAGGTGGTGCCGATAGGGTGGGATGGCTGG AACATCGCCAAGCCGGAGAGCAGCGGGATCTACTACGGCGAGTTCAAGTGCACCGGCCCC GGCTCCGACGCCAAGAAGAGGGTGGGTTGGGCGCTTGACCTCACCGCGGATCAGGCCAAG CCCTTCATCGGCACGCACTACATCTATGGCGACTCATGGATCCTCCCGCCACCAGACGGG AAATCAGCGGCATCTACCTCGACGGCGAGTAAATCAACCGCATCGGCGATACCCAGGAAC TCAACTGCACCGGCGACGGCAACGGAAAGTAACTCAACTGCACCGGCGACACCCAGCAAC TCAACTGCACCGGTGACGGCAAGTAATTCAACTGCACCGGCGACGGCGAGTAGTTCAAAC CCACCTGCCACGAAGAGTTACTCGGGTCCACCGGCGACGCCAAGTGCTTCAAGCACACCG GCAAAGGCGAGTAGATAA

Peptide Sequence

PEP ID	Os11t0683700-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:27656251:27658409:-1 gene:Os11g0683700 transcript:Os11t0683700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 33 description:Pectin lyase fold domain containing protein. (Os11t0683700-01)
Sequence	MDRPNLAVAVVGLLAVVAATLPAPSWQFFDLFLPAGPSHRSSGGGFGKWVLMNHEEYVEK KSLYAMKAAGDIGGKTIDASLSAAEEAKVTWVVDPKGTPGDTTFTTIAAALEKVPEGNTK RVILDLKPGAEFREKLLLNITKPYITFKSDPANPAVIAWNDMAATRGKDGKPVGTVGSTT VAVESDYFMAYGVVFKNDAPLAKPGAEGGQAVALRLFGTKAAIYNCTIDGGQDTLYDHKG LHYIKDSLIMGSVDFIFGFGRSLYEGCTIVSVTKEVSVLTAQQRTKTIEGAIESGFSFKN CSIKGQGQIYLGRAWGDSSRVVYSYTDMSKEVVPIGWDGWNIAKPESSGIYYGEFKCTGP GSDAKKRVGWALDLTADQAKPFIGTHYIYGDSWILPPPDGKSAASTSTASKSTASAIPRN STAPATATESNSTAPATPSNSTAPVTASNSTAPATASSSNPPATKSYSGPPATPSASSTP AKASR

Transcript Sequence

Transcript ID	Os11t0683700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:27656251:27658409:-1 gene:Os11g0683700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 33 description:Pectin lyase fold domain containing protein. (Os11t0683700-01)
Sequence	GACAGAACGAATTAGCTGCATACTGCAGCAACTAATAAACGATGGATCGTCCCAACCTCG CCGTGGCCGTGGTGGGGCTACTGGCGGTGGTGGCGGCGACGCTGCCGGCGCCGTCATGGC AGTTCTTCGACCTATTCCTCCCCGCCGGCCCCAGCCACCGCTCCTCCGGCGGAGGGTTTG GCAAGTGGGTGCTGATGAACCACGAGGAGTACGTCGAGAAGAAGTCGCTGTACGCCATGA AGGCCGCCGGCGACATCGGCGGGAAGACCATCGACGCGAGCCTCTCGGCGGCGGAGGAGG CCAAGGTGACGTGGGTGGTTGACCCCAAGGGGACGCCGGGCGACACCACCTTCACCACCA TCGCGGCGGCGCTCGAGAAGGTCCCCGAGGGGAACACCAAGCGCGTCATCCTCGACCTCA AGCCCGGCGCCGAGTTCCGGGAGAAGCTCCTCCTCAACATCACTAAGCCCTACATCACCT TCAAGTCCGACCCTGCCAACCCGGCGGTGATCGCCTGGAACGACATGGCTGCCACCAGGG GCAAGGACGGCAAGCCCGTCGGCACCGTCGGGAGCACCACCGTCGCCGTCGAGTCCGACT ACTTCATGGCCTACGGCGTCGTCTTCAAGAACGACGCGCCGCTGGCCAAGCCGGGTGCCG AGGGTGGCCAGGCGGTGGCGCTCCGCCTGTTCGGCACCAAGGCAGCCATCTACAACTGCA CCATCGACGGCGGGCAGGACACCCTATACGATCACAAGGGACTCCACTACATCAAGGATA GCCTCATCATGGGCAGCGTCGACTTCATCTTTGGATTCGGGAGATCACTCTACGAGGGCT GCACCATCGTCTCCGTCACCAAGGAGGTGTCCGTGCTGACGGCGCAGCAGAGGACCAAGA CCATCGAGGGCGCCATAGAAAGTGGCTTCTCCTTCAAGAACTGCAGCATCAAAGGACAAG GGCAGATCTACCTCGGCCGGGCATGGGGGGATTCGTCGCGGGTGGTGTACTCCTACACGG ACATGTCCAAGGAGGTGGTGCCGATAGGGTGGGATGGCTGGAACATCGCCAAGCCGGAGA GCAGCGGGATCTACTACGGCGAGTTCAAGTGCACCGGCCCCGGCTCCGACGCCAAGAAGA GGGTGGGTTGGGCGCTTGACCTCACCGCGGATCAGGCCAAGCCCTTCATCGGCACGCACT ACATCTATGGCGACTCATGGATCCTCCCGCCACCAGACGGGAAATCAGCGGCATCTACCT CGACGGCGAGTAAATCAACCGCATCGGCGATACCCAGGAACTCAACTGCACCGGCGACGG CAACGGAAAGTAACTCAACTGCACCGGCGACACCCAGCAACTCAACTGCACCGGTGACGG CAAGTAATTCAACTGCACCGGCGACGGCGAGTAGTTCAAACCCACCTGCCACGAAGAGTT ACTCGGGTCCACCGGCGACGCCAAGTGCTTCAAGCACACCGGCAAAGGCGAGTAGATAAG TGCAGCGGCGGCGCGGTGAGTCACAACTTCATCTACGGCAATTGAAGGATCCTCCCGCCA CCAAAGTGATTCAAATATTTCGGAGTAACTATTACCAATTTAATTGGGCCCAATCAATTC TGTTTTGGAGGCCCGTTTGTTCTTTGTGTTGTGTTAATTGGGCCGGATTGGTCGGCCGGC CACATAGATGTGTAACATTTGTATTTTTTTCCCAATTCATTTTTGGTCTTCTATCAGTGT ACGCACCTTCAAAATGGTGAATTTTTACAGAAGTTTTTGAAGAAGACTTGTGCTCTGTAT GCGTGGCAATTTACTTTAACGATCGACACGACGGCATC