Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0658800-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:26420114:26423933:-1 gene:Os11g0658800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os11t0658800-01)
Sequence

ATGAAGAGAAGACTGGTGGTCGTAGCATTGGTGTTGCTGGCCGTTGTTGAGTTGGTTCAT
GGCGATGGGTGGCGATGGGCGCCGGGGTCGCGGCCTCACAGCGTGACCATCACCGAGTTC
GGCGCCGTCGGCGATGGCAAGACGCTCAACACCCTGCCCTTCCAGAACGCCGTCTTCTAC
GCTCGGTCCTTCGCCGACAAGGGCGGCGCGCAGCTGTACGTGCCCAAGGGACGGTGGCTC
ACTGGCAGCTTCAACCTCACCAGCCACCTCACCCTCTTCCTCGAGGAAGAGGCCGTCATC
ATCGGCACAAAGGATCCATCACAGTGGCCGATTGTGGAACCTTTGCCATCTTATGGGCAA
GGATTAGATCTTCCAGGTCCTAGACACCGCAGTTTAATAAATGGATATAATTTAAGTGAT
GTTGTCATTACTGGGAATAATGGAGTTATTGATGGTCAGGGCTCGGTATGGTGGGATTGG
CTTCACTCCCATGAGCTTAACCATAGCCGACCTCATATTGTGGAGTTTCTGCATTCCGAA
GAAGTTGTAATCTCAAACTTAACATTTTTAAATTCTCCAGCCTGGAGCATACATCCAGTG
TATTGCAGCAATGTAAAGGTCCACAATGTCACAATCAAGACCTCATTGGATGCTCCACTC
ACTGATGGCATAGTTCCAGATTCATGTTCCAACGTGTGCATTGAGGATAGCAGCATTAGT
GTTGGTCATGATGCCATATCACTCAAAAGCGGGTGGGACAATTACGGAATTTCTTTTGGA
AGGCCAACCTCAGACATTCATATCAGTAGGGTTGATCTGCAAGCATCGTCTGGAGCTGCT
CTTGCAATTGGTAGTGAAATGTCTGGTGGAATTTCAGATATTCATGTTGATCACATTCGA
ATCGGCAGTTCCAGTAAAGGCATCTCCTTCAGGACTACTCCGGGACGTGGAGGTTACATA
GCGGAAGTTGTCGTCGCAGATGTAGTAATGGATAGTGTCCATCTCGCCATTGAGTTTACC
GGTAACTGGTCAAGCCACCCAGATGACCATTTTGATCCATCTTTTCTTCCGGTGATAGAT
CAAATCACCCTTAAGAATATGGAGGGGACAAACATCTCTGTTGCTGGAGTTCTATCAGGA
ATCGAGGGTGATCCATTTAGTGCTATATGCCTTTCTAATCTCAATTTCTCTATAGCCGAT
TTGGCTCCTTCCAGTGCCTGGACTTGTTCAAATGTGCATGGATATTCTGAATTAGTATTC
CCCAAGCCTTGCTCAGAACTCCATGACACATCTACAAACTCCTCCATCTGTTTCTCCCTC
TCTAGTTACAGTGCCCTCGCAGTACTATAA

Peptide Sequence

PEP ID

Os11t0658800-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:26420114:26423933:-1 gene:Os11g0658800 transcript:Os11t0658800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os11t0658800-01)
Sequence

MKRRLVVVALVLLAVVELVHGDGWRWAPGSRPHSVTITEFGAVGDGKTLNTLPFQNAVFY
ARSFADKGGAQLYVPKGRWLTGSFNLTSHLTLFLEEEAVIIGTKDPSQWPIVEPLPSYGQ
GLDLPGPRHRSLINGYNLSDVVITGNNGVIDGQGSVWWDWLHSHELNHSRPHIVEFLHSE
EVVISNLTFLNSPAWSIHPVYCSNVKVHNVTIKTSLDAPLTDGIVPDSCSNVCIEDSSIS
VGHDAISLKSGWDNYGISFGRPTSDIHISRVDLQASSGAALAIGSEMSGGISDIHVDHIR
IGSSSKGISFRTTPGRGGYIAEVVVADVVMDSVHLAIEFTGNWSSHPDDHFDPSFLPVID
QITLKNMEGTNISVAGVLSGIEGDPFSAICLSNLNFSIADLAPSSAWTCSNVHGYSELVF
PKPCSELHDTSTNSSICFSLSSYSALAVL

Transcript Sequence

Transcript ID

Os11t0658800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:26420114:26423933:-1 gene:Os11g0658800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os11t0658800-01)
Sequence

TTCTCTTCTCTCTTCTCTCTGCTGCTGCTGCGGCGCTGCAGCTTCTCCTCCTCTTCTTCC
GCCGCGGATTTTGGCCGGAATTTCGCCGGAAAAATCTGGTTTTTTCAAGTCTCTTCTTTG
CCTGCGGCGGAGGCGCGTGGATTTTTTTCTTCTCTGCTGCTTCGTCTTCTCCCATCCCTC
TCCCTCTCTTGCCGCGAGGAGGGGAGAGGGGGACTTGATGAAGAGAAGACTGGTGGTCGT
AGCATTGGTGTTGCTGGCCGTTGTTGAGTTGGTTCATGGCGATGGGTGGCGATGGGCGCC
GGGGTCGCGGCCTCACAGCGTGACCATCACCGAGTTCGGCGCCGTCGGCGATGGCAAGAC
GCTCAACACCCTGCCCTTCCAGAACGCCGTCTTCTACGCTCGGTCCTTCGCCGACAAGGG
CGGCGCGCAGCTGTACGTGCCCAAGGGACGGTGGCTCACTGGCAGCTTCAACCTCACCAG
CCACCTCACCCTCTTCCTCGAGGAAGAGGCCGTCATCATCGGCACAAAGGATCCATCACA
GTGGCCGATTGTGGAACCTTTGCCATCTTATGGGCAAGGATTAGATCTTCCAGGTCCTAG
ACACCGCAGTTTAATAAATGGATATAATTTAAGTGATGTTGTCATTACTGGGAATAATGG
AGTTATTGATGGTCAGGGCTCGGTATGGTGGGATTGGCTTCACTCCCATGAGCTTAACCA
TAGCCGACCTCATATTGTGGAGTTTCTGCATTCCGAAGAAGTTGTAATCTCAAACTTAAC
ATTTTTAAATTCTCCAGCCTGGAGCATACATCCAGTGTATTGCAGCAATGTAAAGGTCCA
CAATGTCACAATCAAGACCTCATTGGATGCTCCACTCACTGATGGCATAGTTCCAGATTC
ATGTTCCAACGTGTGCATTGAGGATAGCAGCATTAGTGTTGGTCATGATGCCATATCACT
CAAAAGCGGGTGGGACAATTACGGAATTTCTTTTGGAAGGCCAACCTCAGACATTCATAT
CAGTAGGGTTGATCTGCAAGCATCGTCTGGAGCTGCTCTTGCAATTGGTAGTGAAATGTC
TGGTGGAATTTCAGATATTCATGTTGATCACATTCGAATCGGCAGTTCCAGTAAAGGCAT
CTCCTTCAGGACTACTCCGGGACGTGGAGGTTACATAGCGGAAGTTGTCGTCGCAGATGT
AGTAATGGATAGTGTCCATCTCGCCATTGAGTTTACCGGTAACTGGTCAAGCCACCCAGA
TGACCATTTTGATCCATCTTTTCTTCCGGTGATAGATCAAATCACCCTTAAGAATATGGA
GGGGACAAACATCTCTGTTGCTGGAGTTCTATCAGGAATCGAGGGTGATCCATTTAGTGC
TATATGCCTTTCTAATCTCAATTTCTCTATAGCCGATTTGGCTCCTTCCAGTGCCTGGAC
TTGTTCAAATGTGCATGGATATTCTGAATTAGTATTCCCCAAGCCTTGCTCAGAACTCCA
TGACACATCTACAAACTCCTCCATCTGTTTCTCCCTCTCTAGTTACAGTGCCCTCGCAGT
ACTATAAATATACAGAGTAATCTTGTGTCCATCCTTCCCCTGTCTTGTTCCAGTCCTTGT
ACAATTCAGAAATTGAGCATCCATCACCATCTTTCCAATTCTTTACCACCAATAAATTCA
TCACAAGAATGAAACAGTACCCCTCTTATGGTCCTAAGGCTCAGATTATAAGCTGCATAA
TGATCTTGAGGAGGAAGAATCTAAGTGGGGTTGTGGATAGCTAGGTGCATGCCTGTACAG
CTACATTTCTTCATTCAATCTGTAAGAAAAAAAATTTCTTTTTTGGTAGGGTTGAGTGCA
GGATATTTTCTTCATACAATTGTCATTTGGTTATAAATTATCACATCATGATTAAATTAT
CTCTGTATATTCTATCTCTGTGAGCAACATTCTAATAGAGCAGATCACATGTTATCCTGG