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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0658700-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:26414362:26418378:1 gene:Os11g0658700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 68 description:MADS box transcription factor, Pollen maturation (Os11t0658700-01);MADS domain transcription factor, pollen maturation (Os11t0658700-02)
Sequence

ATGGGGAGGGTCAAGCTCAAGATAAAGAAGCTGGAGAACAGCAGCGGCCGACATGTCACG
TACTCGAAACGGAGGTCCGGGATCCTCAAGAAAGCCAAGGAGCTCTCCATTTTGTGCGAC
ATCCCTCTCATCCTGCTGATGTTTTCACCCAACGACAAGCCCACGATTTGCGTTGGCGAT
CACAGCAGCATAGAGGATGTCATAACAAAGTATGCACAGCAAACTCCTCAGGAAAGGGCT
AAAAGGAAGTTGGAGAGCTTAGAAGCCCTAAAGAAGACATTCAAGAAACTAGATCATGAT
GTCAATATTCAGGACTTTTTAGGCTCAGGGGGTCAGACTGTTGAGGAATTATCGAGCCAT
CTTGGTGCTTTGCAATGTCAAATGGCAGATGTCGAAAAGCGCCTCAGTTATTGGAGCGAT
CCCGAGAAGGTTGAGAATATTGACCATATAAGAGCGATGGAGCAATCTCTCAAAGAATCT
CTGAATCGCATCCGGATTCATAAGGAGAACTTTGCAAAGCAGCATCTGATGAGCCTACAG
TGTGCAGCTGCTCAGTTCCAGAACGACATGAAGCTCCCACTAGGACTAACAGGTGACCCG
AACACTTCATCGTGGTTCCATGGCGGCGGCGGCGCAGAGGCGCAGCAGCCAATGATGCTA
CCTGAAGACCCCAGCTTGCTCCATCAGAGAGACATCGGGTGCTCAGCGAGCACGTCGTTG
CAGAGCTACCCGGGCTACTTCAGCATGGGCAAGCAGTCCACCGACAACGCCGGCGGCGGC
GAGCAGCACCACCACGCGGCGGTGCAGCAGCAGCCGGAGTTCAGCCAGGCCGACTGCCTG
ACGTCGCTGCAGCTCGGCGCGCAGTTCCCGTACCCGTCGGCGTTCGACAACGCCGGGCTG
CTCAGCGACCGGCTGTTCGACAACGCGGCGGCGGCGGCGGCGGCGATGGACTTCGGCGGC
CACTACGACCTGCCGAGGCCCGGCGACGAGGCCAGCTTCCAGAACTGGGCGTCGGCGGCC
TGCGGCGCCACCATGTATGATCATCAGCAGCAGCAGCAGCAACAGCAGCAGCCTGCCCAA
CTCCCTGCAGCAGCAACTGTAGAAGCACCTTCATTCAATCATCCCTCACCACACCGGCAG
CTCATGATTTGA

Peptide Sequence

PEP ID

Os11t0658700-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:26414362:26418378:1 gene:Os11g0658700 transcript:Os11t0658700-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 68 description:MADS box transcription factor, Pollen maturation (Os11t0658700-01);MADS domain transcription factor, pollen maturation (Os11t0658700-02)
Sequence

MGRVKLKIKKLENSSGRHVTYSKRRSGILKKAKELSILCDIPLILLMFSPNDKPTICVGD
HSSIEDVITKYAQQTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGSGGQTVEELSSH
LGALQCQMADVEKRLSYWSDPEKVENIDHIRAMEQSLKESLNRIRIHKENFAKQHLMSLQ
CAAAQFQNDMKLPLGLTGDPNTSSWFHGGGGAEAQQPMMLPEDPSLLHQRDIGCSASTSL
QSYPGYFSMGKQSTDNAGGGEQHHHAAVQQQPEFSQADCLTSLQLGAQFPYPSAFDNAGL
LSDRLFDNAAAAAAAMDFGGHYDLPRPGDEASFQNWASAACGATMYDHQQQQQQQQQPAQ
LPAAATVEAPSFNHPSPHRQLMI

Transcript Sequence

Transcript ID

Os11t0658700-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:26414362:26418378:1 gene:Os11g0658700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 68 description:MADS box transcription factor, Pollen maturation (Os11t0658700-01);MADS domain transcription factor, pollen maturation (Os11t0658700-02)
Sequence

CATCTCTTCGCAGAGGGGATTCTGCCTCCGCCATGGGGAGGGTCAAGCTCAAGATAAAGA
AGCTGGAGAACAGCAGCGGCCGACATGTCACGTACTCGAAACGGAGGTCCGGGATCCTCA
AGAAAGCCAAGGAGCTCTCCATTTTGTGCGACATCCCTCTCATCCTGCTGATGTTTTCAC
CCAACGACAAGCCCACGATTTGCGTTGGCGATCACAGCAGCATAGAGGATGTCATAACAA
AGTATGCACAGCAAACTCCTCAGGAAAGGGCTAAAAGGAAGTTGGAGAGCTTAGAAGCCC
TAAAGAAGACATTCAAGAAACTAGATCATGATGTCAATATTCAGGACTTTTTAGGCTCAG
GGGGTCAGACTGTTGAGGAATTATCGAGCCATCTTGGTGCTTTGCAATGTCAAATGGCAG
ATGTCGAAAAGCGCCTCAGTTATTGGAGCGATCCCGAGAAGGTTGAGAATATTGACCATA
TAAGAGCGATGGAGCAATCTCTCAAAGAATCTCTGAATCGCATCCGGATTCATAAGGAGA
ACTTTGCAAAGCAGCATCTGATGAGCCTACAGTGTGCAGCTGCTCAGTTCCAGAACGACA
TGAAGCTCCCACTAGGACTAACAGGTGACCCGAACACTTCATCGTGGTTCCATGGCGGCG
GCGGCGCAGAGGCGCAGCAGCCAATGATGCTACCTGAAGACCCCAGCTTGCTCCATCAGA
GAGACATCGGGTGCTCAGCGAGCACGTCGTTGCAGAGCTACCCGGGCTACTTCAGCATGG
GCAAGCAGTCCACCGACAACGCCGGCGGCGGCGAGCAGCACCACCACGCGGCGGTGCAGC
AGCAGCCGGAGTTCAGCCAGGCCGACTGCCTGACGTCGCTGCAGCTCGGCGCGCAGTTCC
CGTACCCGTCGGCGTTCGACAACGCCGGGCTGCTCAGCGACCGGCTGTTCGACAACGCGG
CGGCGGCGGCGGCGGCGATGGACTTCGGCGGCCACTACGACCTGCCGAGGCCCGGCGACG
AGGCCAGCTTCCAGAACTGGGCGTCGGCGGCCTGCGGCGCCACCATGTATGATCATCAGC
AGCAGCAGCAGCAACAGCAGCAGCCTGCCCAACTCCCTGCAGCAGCAACTGTAGAAGCAC
CTTCATTCAATCATCCCTCACCACACCGGCAGCTCATGATTTGATGATCCTCTAGTGAAA
TTGGAGAGCTCTTTTTCGCTACATCGAAAGACATTATCATTGCTGCTAAATTTTTCGATC
ACACTCAATTCAGAAACTTGTCATCTCAGCAGTGCGTCTTGGAAAGGGAAGAGATATGGT
GTATAGAGGAAATTGGATTTTGTCAGTGTAAAGTATTAACTGACTGTAGCCAATTAAAAT
TGTAAAATGTGATGAGTTATTAC