Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0657400-00
CDS Infomation	cds chromosome:IRGSP-1.0:11:26317273:26321503:-1 gene:Os11g0657400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Extensin-like protein. (Os11t0657400-00)
Sequence	ATGGACCTCCGGCTCCTCCTCGCCCCCGGCGGGCGCCGCGCCGCCATGGCACTGATTCTC GCCGTCCTCGCCGCCTGCCTCTCCTCCGCCGCCAACGTCGGCGCGGTGACCAGCGCCGAG GTGTCGTACATCGCGCACCGGCAGCTGCTGGCGATGAAGGAGGCCGGCGTGAGCGAGGAG GGCGACCTGCCGTCCGATGACTTCGACTTCGACGACCGCGTCGGAGTCGCCGTCGGCGAC TTCCCGAACCCGCGGCTCCGCAAGGCGTACATCGCGCTCCAGGCGTGGCGGCGCGCGTTC TACTCGGACCCCAAGGGGTACACCAACAACTGGACGGGCAACGACGTGTGCTCCTACAAC GGCGTCATCTGCTACGCCGCCATCGACGACCCCAAGATCATGGTGGTCGCCGGCATCGAC CTCAACGGCGCCGACATCGCCGGGTACCTCCCGCCGGAGCTCGGCCTCCTCACCGACCTC GCCTTCTTCCACATCAACACCAACCGCTTCTGCGGCATCATCCCCAAGAGCATGTCGAGG CTGTCGCTGCTGCACGAGTTCGACGTCAGCCACAACCGCTTCGTCGGCGTCTTCCCCCAC GTCTGCCTCGAGATGGCCGTGCTCAAGTACCTCGACATCCGCTTCAACGACTTCGAGGGC GAGCTGCCGCCGGCGCTGTTCGACAAGGAGCTCGACGCCATCTTCGTCAACAGCAACCGA TTCGTCGGCTACATCCCGGGCAACCTCGGCAACTCCACCGCCTCCGTCATCGTCTTCGCC AACAACGCCTTCGTCGGCTGCATCCCCAAGAGCATCGGCTGCATGGCCAAAACGCTCGAC GAGATCAGCTTCATGAACAACAAGCTCGACGGCTGCGTGCCCATGGAGATGGGCTACCTG CAGAACACCTACGTCATCGACATCAGCGGCAACGTCCTCGTCGGCACGCTGCCCACCTCG CTCTCCAACTGCAGCAAGCTGGAGCAGCTGGACGTGTCCAGGAACGTCTTCACCGGCATC GTCCACGAGTCCATCTGCGAGCTCCCCGTGCTCGTCAACTTCAGCTTCGCCTACAACTTC TTCAACTCCGAGTCGGCGCCGTGCATGCCGTCGGAGAGCAGCAAGGTCAACCTCGACGAC AAGGACAACTGCCTCGGCGCGCTCCGACCGGCGCAGAAGACGACGCTGCAGTGCGCCCCC GTGCTCGCCCGCCCCGTCGACTGCAGCAAGCACGTCTGCCCCGGACACCCGACGCCCGGG AAGCCGTCGGAGCCGCCGGAGAAGCCGCCGCTCATCCCGGTGCCGGTGGGGCCGCCGGAG AAATCGCCGGCTTACGAGGAACCACCGGCCGCGCCTTCCACCCCGACGTCGCACGGCCCG CCACCTCCAGAGGAGGAGTCACCTGAGGAACCACCCGAGGAACCAACACCGTCGCCGACA CCAAGCAGCCCAGAGTCACCGGCCAAGATGGCGCCGCCTCCGGCACCCGCCATCAAGGGA GTGACATCGCCGCCGGCAGAGTATGGTGCTCCACCGCCACCAAGTTCGGGTTGGCTCCCC AAGAGTCCCGAGCGCAAGAAGGCACCTCCGCCACAAGCGGAGCCTCCTACTGAGTACTCC CCACCTGCAACTCCAGAGAGCTCGCCACCACCTGAAGGGAAGTCCCCTCCTACGCCGACG GCCTCGCACTCGCCACCACCGGTACCAGAGGGCCACACACCTTCCCCACCAAAGTCGGGA CCACCTGCTGGGGAGTCTCCTCCTACACCTGAGTCAAAAGCCTCGCCTCCACCGACTCCA GAAGAATACACACCTTCCCCGCCAAAATCGACACCACCAGCTGAGAAGTCTCCTCCTACA CCTGAGTCGAAAGCCTCATCTCCACCACCACCCGCTCCAGAGGGCCACACACCTTCCCCG CCAGAGTCGACACCACCATCTGAGAAATCTCCTCCTACACCCGAGTCGAAAGCCTCATCT CCACCACCACCCACTCCAGAGGGCCACACACCTTCCCCGCCAAAGTCGACACCGCCAACT GAGAAGTCTCCTCCTACACCTGAGTCGGAATCCTCCTCTCCACCACCACCCGCTCCAGAG GGCCACATGCCTTCCCCGCCAAAGTCGACGCCACCAGTTGAGAAGTCTCCTCCCACGCCT GAGTCGGAAGCCTCATCTCCACCACCACCCGCTCCGGAGGGCCACACACCTTCCCCACCA AAGTCATCACCACCAGAAGAGAAGTCTCCTCCTATACCGCCGACCTCGCATACATCACCT CCAACTCCAGAGGAATACACACCTTCCCCACCAAAGTCATCGCCACCAGAAGAGAAGTCT CCTCCACCACATTCCCCAGAAAAGTCACCACCATCAGAGGCTCACCCAACTTCTCCACCT CCCTCGGAGAAGTCACCTCCAACACCAGCTGAAGAGAGTTCTCCGCCAACTCCGGAAAAA TCTCCATCACCACCATCGGGTCATGAAGGCACTCCACCATCCCCAGTGAAATCTTCCTCA CCACCACCAGAAGCTCATGTTAGCTCACCACCACCAGAAAAATCTTCCTCGCCACCACCA GAAGCTCATGTTAGTTCACCACCACCACCTGAAAAGTCTCCACCACCACCAGAGACAAAG TCTCCACCAACGCTAACACCGGAGATCTCTCCACCTCCGGAAGGGAAGTCCCCACCATCA CATACTCCGGAGAGCTCATCCCCACCATCTAAGGAGTCAGAACCACCACCGACACCAACA CCAAAGAGCTCTCCACCATCTCACGAGGAGTACGTTCCTCCATCTCCGGCAAAATCAACT CCACCTCCAGAAGAGAAGTCCCCACCATCACATACTCCGGAGAGCTCATCCCCACCATCT GAGGAGTCAGAACCACCACCGTCACCAACACCAAAGAGCTCTCCACCATCTCACGAGGAG TACGTTCCTCCATCTCCGGCGAAATCAACTCCACCTCCAGAAAAGCCACTACCACCACAC ACACCAACAATAAATAGTTCTCCACCATCGGAAGAAGAGTACATGCCTCCATCTCCAGTG AAATCAAGTCCACCACCAGCCGAGAAGTCCCAGCCACCGCCATCTCCAGTTGAGTCAGTA CTTCCACCAGTGAAGTCTTCACCACCACACGCACCGGTTATCTCAGAACCACCACCAACA AAGTCTTCACCGCCGCAAGTGCCAGTGACCTCGGAACCACCGCCAGCAAAGTCTTCACCT CCACATGAACCAATTAGCCCGCCAGAAACACCAGAGAAGTCTTACCCGCCATCAACTCCT GAGGAATCATCTCCTCCCTCAGTCCCCAAGGCTTCATCTCCACCAACTGAGAAGTCTCTT CCTCCACCGGCTACAGTGAGCTTGCCGCCTCCAACAGTTAAGCCTTTGCCCCCACCGGTT CCTGTGAGCTCACCGCCACCTCCGGAGAAGTCTCCACCCCCGCCAGCTCCGGTGATCTTG CCGCCTCCTCCAATTAAATCTCCTCCCCCACCGGCTCCAGTCATCTCGCCACCTCCTCCA GTTAAGTCCCCACCACCACCAGCACCAGTTATCTTGCCACCTCCTCCTGTGAAGTCTCCA CCACCACCAGCACCGGTCATCTCGCCACCCCCACCTGTGAAGTCTCCACCTCCTCCCGCA CCAGTCATCTTGCCACCCCCACCTGTGAAGTCTCCACCTCCACCTGCACCGGTCATCTCG CCACCACCTCCAGAGAAGTCACCACCACCAGCAGCACCTGTGATCTTGTCACCACCAGCG GTGAAGTCTCTTCCCCCACCGGCACCGGTCAGCCTACCACCACCACCGGTGAAGTCGCTT CCCCCACCAGCACCGGTCAGCCTACCACCACCCGTCGTGAAGTCACTTCCCCCACCAGCA CCAGTCAGCCTACCACCACCAGCGGTGAAGCCTCTTCCCCCACCAGCACCAGTCAGCCTA CCACCACCAGCGGTGAAGCCTCTTCCCCCACCAGTTCCGCAGGTCTCCCTCCCCCCACCG AAACAGGAGTCATTGCCGCCACCAGCAAAGGAAGCTGAAGCTCCACCTGCAAAGGAATCT AAACCTCCACCAGCAATGGAAGCTGAAGCTCCACCGGCGTTCGACACTACTGTACTCTTA CCGCCGGTGATGGCGCACCAGTACGCCTCACCTCCACCACCTCAGTTCCAAGGATACTAA

Peptide Sequence

PEP ID	Os11t0657400-00
PEP Infomation	pep chromosome:IRGSP-1.0:11:26317273:26321503:-1 gene:Os11g0657400 transcript:Os11t0657400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Extensin-like protein. (Os11t0657400-00)
Sequence	MDLRLLLAPGGRRAAMALILAVLAACLSSAANVGAVTSAEVSYIAHRQLLAMKEAGVSEE GDLPSDDFDFDDRVGVAVGDFPNPRLRKAYIALQAWRRAFYSDPKGYTNNWTGNDVCSYN GVICYAAIDDPKIMVVAGIDLNGADIAGYLPPELGLLTDLAFFHINTNRFCGIIPKSMSR LSLLHEFDVSHNRFVGVFPHVCLEMAVLKYLDIRFNDFEGELPPALFDKELDAIFVNSNR FVGYIPGNLGNSTASVIVFANNAFVGCIPKSIGCMAKTLDEISFMNNKLDGCVPMEMGYL QNTYVIDISGNVLVGTLPTSLSNCSKLEQLDVSRNVFTGIVHESICELPVLVNFSFAYNF FNSESAPCMPSESSKVNLDDKDNCLGALRPAQKTTLQCAPVLARPVDCSKHVCPGHPTPG KPSEPPEKPPLIPVPVGPPEKSPAYEEPPAAPSTPTSHGPPPPEEESPEEPPEEPTPSPT PSSPESPAKMAPPPAPAIKGVTSPPAEYGAPPPPSSGWLPKSPERKKAPPPQAEPPTEYS PPATPESSPPPEGKSPPTPTASHSPPPVPEGHTPSPPKSGPPAGESPPTPESKASPPPTP EEYTPSPPKSTPPAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASS PPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSPPTP ESEASSPPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEEYTPSPPKSSPPEEKS PPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSS PPPEAHVSSPPPEKSSSPPPEAHVSSPPPPEKSPPPPETKSPPTLTPEISPPPEGKSPPS HTPESSSPPSKESEPPPTPTPKSSPPSHEEYVPPSPAKSTPPPEEKSPPSHTPESSSPPS EESEPPPSPTPKSSPPSHEEYVPPSPAKSTPPPEKPLPPHTPTINSSPPSEEEYMPPSPV KSSPPPAEKSQPPPSPVESVLPPVKSSPPHAPVISEPPPTKSSPPQVPVTSEPPPAKSSP PHEPISPPETPEKSYPPSTPEESSPPSVPKASSPPTEKSLPPPATVSLPPPTVKPLPPPV PVSSPPPPEKSPPPPAPVILPPPPIKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSP PPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPPEKSPPPAAPVILSPPA VKSLPPPAPVSLPPPPVKSLPPPAPVSLPPPVVKSLPPPAPVSLPPPAVKPLPPPAPVSL PPPAVKPLPPPVPQVSLPPPKQESLPPPAKEAEAPPAKESKPPPAMEAEAPPAFDTTVLL PPVMAHQYASPPPPQFQGY

Transcript Sequence

Transcript ID	Os11t0657400-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:26317273:26321503:-1 gene:Os11g0657400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Extensin-like protein. (Os11t0657400-00)
Sequence	ATGGACCTCCGGCTCCTCCTCGCCCCCGGCGGGCGCCGCGCCGCCATGGCACTGATTCTC GCCGTCCTCGCCGCCTGCCTCTCCTCCGCCGCCAACGTCGGCGCGGTGACCAGCGCCGAG GTGTCGTACATCGCGCACCGGCAGCTGCTGGCGATGAAGGAGGCCGGCGTGAGCGAGGAG GGCGACCTGCCGTCCGATGACTTCGACTTCGACGACCGCGTCGGAGTCGCCGTCGGCGAC TTCCCGAACCCGCGGCTCCGCAAGGCGTACATCGCGCTCCAGGCGTGGCGGCGCGCGTTC TACTCGGACCCCAAGGGGTACACCAACAACTGGACGGGCAACGACGTGTGCTCCTACAAC GGCGTCATCTGCTACGCCGCCATCGACGACCCCAAGATCATGGTGGTCGCCGGCATCGAC CTCAACGGCGCCGACATCGCCGGGTACCTCCCGCCGGAGCTCGGCCTCCTCACCGACCTC GCCTTCTTCCACATCAACACCAACCGCTTCTGCGGCATCATCCCCAAGAGCATGTCGAGG CTGTCGCTGCTGCACGAGTTCGACGTCAGCCACAACCGCTTCGTCGGCGTCTTCCCCCAC GTCTGCCTCGAGATGGCCGTGCTCAAGTACCTCGACATCCGCTTCAACGACTTCGAGGGC GAGCTGCCGCCGGCGCTGTTCGACAAGGAGCTCGACGCCATCTTCGTCAACAGCAACCGA TTCGTCGGCTACATCCCGGGCAACCTCGGCAACTCCACCGCCTCCGTCATCGTCTTCGCC AACAACGCCTTCGTCGGCTGCATCCCCAAGAGCATCGGCTGCATGGCCAAAACGCTCGAC GAGATCAGCTTCATGAACAACAAGCTCGACGGCTGCGTGCCCATGGAGATGGGCTACCTG CAGAACACCTACGTCATCGACATCAGCGGCAACGTCCTCGTCGGCACGCTGCCCACCTCG CTCTCCAACTGCAGCAAGCTGGAGCAGCTGGACGTGTCCAGGAACGTCTTCACCGGCATC GTCCACGAGTCCATCTGCGAGCTCCCCGTGCTCGTCAACTTCAGCTTCGCCTACAACTTC TTCAACTCCGAGTCGGCGCCGTGCATGCCGTCGGAGAGCAGCAAGGTCAACCTCGACGAC AAGGACAACTGCCTCGGCGCGCTCCGACCGGCGCAGAAGACGACGCTGCAGTGCGCCCCC GTGCTCGCCCGCCCCGTCGACTGCAGCAAGCACGTCTGCCCCGGACACCCGACGCCCGGG AAGCCGTCGGAGCCGCCGGAGAAGCCGCCGCTCATCCCGGTGCCGGTGGGGCCGCCGGAG AAATCGCCGGCTTACGAGGAACCACCGGCCGCGCCTTCCACCCCGACGTCGCACGGCCCG CCACCTCCAGAGGAGGAGTCACCTGAGGAACCACCCGAGGAACCAACACCGTCGCCGACA CCAAGCAGCCCAGAGTCACCGGCCAAGATGGCGCCGCCTCCGGCACCCGCCATCAAGGGA GTGACATCGCCGCCGGCAGAGTATGGTGCTCCACCGCCACCAAGTTCGGGTTGGCTCCCC AAGAGTCCCGAGCGCAAGAAGGCACCTCCGCCACAAGCGGAGCCTCCTACTGAGTACTCC CCACCTGCAACTCCAGAGAGCTCGCCACCACCTGAAGGGAAGTCCCCTCCTACGCCGACG GCCTCGCACTCGCCACCACCGGTACCAGAGGGCCACACACCTTCCCCACCAAAGTCGGGA CCACCTGCTGGGGAGTCTCCTCCTACACCTGAGTCAAAAGCCTCGCCTCCACCGACTCCA GAAGAATACACACCTTCCCCGCCAAAATCGACACCACCAGCTGAGAAGTCTCCTCCTACA CCTGAGTCGAAAGCCTCATCTCCACCACCACCCGCTCCAGAGGGCCACACACCTTCCCCG CCAGAGTCGACACCACCATCTGAGAAATCTCCTCCTACACCCGAGTCGAAAGCCTCATCT CCACCACCACCCACTCCAGAGGGCCACACACCTTCCCCGCCAAAGTCGACACCGCCAACT GAGAAGTCTCCTCCTACACCTGAGTCGGAATCCTCCTCTCCACCACCACCCGCTCCAGAG GGCCACATGCCTTCCCCGCCAAAGTCGACGCCACCAGTTGAGAAGTCTCCTCCCACGCCT GAGTCGGAAGCCTCATCTCCACCACCACCCGCTCCGGAGGGCCACACACCTTCCCCACCA AAGTCATCACCACCAGAAGAGAAGTCTCCTCCTATACCGCCGACCTCGCATACATCACCT CCAACTCCAGAGGAATACACACCTTCCCCACCAAAGTCATCGCCACCAGAAGAGAAGTCT CCTCCACCACATTCCCCAGAAAAGTCACCACCATCAGAGGCTCACCCAACTTCTCCACCT CCCTCGGAGAAGTCACCTCCAACACCAGCTGAAGAGAGTTCTCCGCCAACTCCGGAAAAA TCTCCATCACCACCATCGGGTCATGAAGGCACTCCACCATCCCCAGTGAAATCTTCCTCA CCACCACCAGAAGCTCATGTTAGCTCACCACCACCAGAAAAATCTTCCTCGCCACCACCA GAAGCTCATGTTAGTTCACCACCACCACCTGAAAAGTCTCCACCACCACCAGAGACAAAG TCTCCACCAACGCTAACACCGGAGATCTCTCCACCTCCGGAAGGGAAGTCCCCACCATCA CATACTCCGGAGAGCTCATCCCCACCATCTAAGGAGTCAGAACCACCACCGACACCAACA CCAAAGAGCTCTCCACCATCTCACGAGGAGTACGTTCCTCCATCTCCGGCAAAATCAACT CCACCTCCAGAAGAGAAGTCCCCACCATCACATACTCCGGAGAGCTCATCCCCACCATCT GAGGAGTCAGAACCACCACCGTCACCAACACCAAAGAGCTCTCCACCATCTCACGAGGAG TACGTTCCTCCATCTCCGGCGAAATCAACTCCACCTCCAGAAAAGCCACTACCACCACAC ACACCAACAATAAATAGTTCTCCACCATCGGAAGAAGAGTACATGCCTCCATCTCCAGTG AAATCAAGTCCACCACCAGCCGAGAAGTCCCAGCCACCGCCATCTCCAGTTGAGTCAGTA CTTCCACCAGTGAAGTCTTCACCACCACACGCACCGGTTATCTCAGAACCACCACCAACA AAGTCTTCACCGCCGCAAGTGCCAGTGACCTCGGAACCACCGCCAGCAAAGTCTTCACCT CCACATGAACCAATTAGCCCGCCAGAAACACCAGAGAAGTCTTACCCGCCATCAACTCCT GAGGAATCATCTCCTCCCTCAGTCCCCAAGGCTTCATCTCCACCAACTGAGAAGTCTCTT CCTCCACCGGCTACAGTGAGCTTGCCGCCTCCAACAGTTAAGCCTTTGCCCCCACCGGTT CCTGTGAGCTCACCGCCACCTCCGGAGAAGTCTCCACCCCCGCCAGCTCCGGTGATCTTG CCGCCTCCTCCAATTAAATCTCCTCCCCCACCGGCTCCAGTCATCTCGCCACCTCCTCCA GTTAAGTCCCCACCACCACCAGCACCAGTTATCTTGCCACCTCCTCCTGTGAAGTCTCCA CCACCACCAGCACCGGTCATCTCGCCACCCCCACCTGTGAAGTCTCCACCTCCTCCCGCA CCAGTCATCTTGCCACCCCCACCTGTGAAGTCTCCACCTCCACCTGCACCGGTCATCTCG CCACCACCTCCAGAGAAGTCACCACCACCAGCAGCACCTGTGATCTTGTCACCACCAGCG GTGAAGTCTCTTCCCCCACCGGCACCGGTCAGCCTACCACCACCACCGGTGAAGTCGCTT CCCCCACCAGCACCGGTCAGCCTACCACCACCCGTCGTGAAGTCACTTCCCCCACCAGCA CCAGTCAGCCTACCACCACCAGCGGTGAAGCCTCTTCCCCCACCAGCACCAGTCAGCCTA CCACCACCAGCGGTGAAGCCTCTTCCCCCACCAGTTCCGCAGGTCTCCCTCCCCCCACCG AAACAGGAGTCATTGCCGCCACCAGCAAAGGAAGCTGAAGCTCCACCTGCAAAGGAATCT AAACCTCCACCAGCAATGGAAGCTGAAGCTCCACCGGCGTTCGACACTACTGTACTCTTA CCGCCGGTGATGGCGCACCAGTACGCCTCACCTCCACCACCTCAGTTCCAAGGATACTAA GCTCCATGGAGAGATTAACGACGACGACGAC