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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0657200-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:26310875:26312789:-1 gene:Os11g0657200 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os11t0657200-01)
Sequence

ATGGCGGCCGCCGCTGACGACGACGAGCTTCGCCGGCGGGCGGCGGCGCTCCGGGAGGTA
TTCGGCGACTCATCGGACAGCGAGGCCGACGACCTTCCCGTTGGCGGGGCGGGCCGGGAG
CAGTGGAGGTGGGAGGCGGTGGAGGGGGTGAGGGGGCTATGGCTCTGCGCCGCCTTCCTC
TCCGCCGACGAGCAGTCGCGCCTACTCACGGCGATCCGGCGAGAAGGATGGTTCAGCGAT
GCACGCAACCAAGCAATGAGATTTGGTGATCTTCCTTCATGGGCTGTTGAGCTTTCTGCG
CTTATCCATGAGGCTATTTGTTTTGGTGATGTCCGTGTTGGTTGTGGTTTGGAGTTGAAA
AATGAGGACGAAGATGCATGTCCTTTACCATCAGATTTGCTGTGGAGGAAACCGCTTTTT
GACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTTGATCTG
ATGCGCTTTGATGATGGAATCGCGATAGTCTCCCTTGAGTCACCATGCGTGATGCACTTC
AGTCGGGCAGAACAAGAAGTTCCTATCTGTGAGACACTGGAGAGTGTGCATGCTGAACCT
ACAAAGATCCCTGTCTACCTGAACCCAGGGTCCCTTGTTCTCATGTCAGGCGACGCGAGA
TACTTATGGAAACATGAGATAAACCGCAAGCCAGGTGCTCAGCAATGGGGTGGCAGGGAG
CTTGAGCAGCAGATAAGAACTTCAATTACACTGAGGAAGCTCCTTCCATCACCAAACTAA

Peptide Sequence

PEP ID

Os11t0657200-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:26310875:26312789:-1 gene:Os11g0657200 transcript:Os11t0657200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os11t0657200-01)
Sequence

MAAAADDDELRRRAAALREVFGDSSDSEADDLPVGGAGREQWRWEAVEGVRGLWLCAAFL
SADEQSRLLTAIRREGWFSDARNQAMRFGDLPSWAVELSALIHEAICFGDVRVGCGLELK
NEDEDACPLPSDLLWRKPLFDQMIANRYEPGEGICAHVDLMRFDDGIAIVSLESPCVMHF
SRAEQEVPICETLESVHAEPTKIPVYLNPGSLVLMSGDARYLWKHEINRKPGAQQWGGRE
LEQQIRTSITLRKLLPSPN

Transcript Sequence

Transcript ID

Os11t0657200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:26310875:26312789:-1 gene:Os11g0657200 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os11t0657200-01)
Sequence

AAGCGAAGCCACCATGGCGGCCGCCGCTGACGACGACGAGCTTCGCCGGCGGGCGGCGGC
GCTCCGGGAGGTATTCGGCGACTCATCGGACAGCGAGGCCGACGACCTTCCCGTTGGCGG
GGCGGGCCGGGAGCAGTGGAGGTGGGAGGCGGTGGAGGGGGTGAGGGGGCTATGGCTCTG
CGCCGCCTTCCTCTCCGCCGACGAGCAGTCGCGCCTACTCACGGCGATCCGGCGAGAAGG
ATGGTTCAGCGATGCACGCAACCAAGCAATGAGATTTGGTGATCTTCCTTCATGGGCTGT
TGAGCTTTCTGCGCTTATCCATGAGGCTATTTGTTTTGGTGATGTCCGTGTTGGTTGTGG
TTTGGAGTTGAAAAATGAGGACGAAGATGCATGTCCTTTACCATCAGATTTGCTGTGGAG
GAAACCGCTTTTTGACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGC
TCATGTTGATCTGATGCGCTTTGATGATGGAATCGCGATAGTCTCCCTTGAGTCACCATG
CGTGATGCACTTCAGTCGGGCAGAACAAGAAGTTCCTATCTGTGAGACACTGGAGAGTGT
GCATGCTGAACCTACAAAGATCCCTGTCTACCTGAACCCAGGGTCCCTTGTTCTCATGTC
AGGCGACGCGAGATACTTATGGAAACATGAGATAAACCGCAAGCCAGGTGCTCAGCAATG
GGGTGGCAGGGAGCTTGAGCAGCAGATAAGAACTTCAATTACACTGAGGAAGCTCCTTCC
ATCACCAAACTAATACCAGCAGAACAGTTGTCAGGAAATTTCTCCAGTTTTTTTGTTCCG
AGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGATGTTGATGCTTACGAGATTA
TGATCAAATTTGGGCACCTAAATGGTTAGGTGTCTCTGTTAGCTTGTGATCAGATTTTTG
TACTTCTGGTTAAGTTGGAAACCCCAACATCGTTTTATTTCTTCCTGCTGTTTTTGTTTT