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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0652900-00
CDS Infomation

cds chromosome:IRGSP-1.0:11:26058375:26059083:-1 gene:Os11g0652900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to tropinone reductase 2. (Os11t0652900-00)
Sequence

ATGGCGGCCGCCGCAGCTCGCAGCATCCCGGACCGGTGGACCCTCGCCGGCGCGACGGCG
CTCGTCACCGGCGGCAGCAAAGGCATCGGGCATGCGATAGTGGAGGAGCTCGCCGGATTC
GGGGCGCGCGTGCACACGTGCGCCCGGAACGCGGCGGAGCTGGAGGCGAGCCGGCGGCGG
TGGGAGGAGCGGGGGCTCCGCGTCACCGCCACCGTCTGCGACGTCTCCGCGCGCGGCGAC
CGGGAGAGGCTGGTCGCCGCCGCGGCGGGGGAGTTCGGCGGCAGGCTGGACATCCTCGTC
AACAACGTCGGCCGGACCATGTTCCGGGCGGCGGCGGCGTGCTCCGGCGAGGACTTCGCC
CTGCTCGTGGCCACCAACCTCGAGTCCTGCTTCCACCTCTCCCAGCTCGCGCACCCGCTC
CTGCTCGCCGCCGGCGGCGGAGGCGGCTGCGTGGTGAACATCTCCTCCGTCGCCGGCACC
GTCGGCATACCGGCGCTGGCCGTGTACTCCATGACCAAGGGCGGCATGAACCAGCTCACC
CGGAGCCTCGCCGCCGAGTGGGCCGGCGACGGCATACGTGTCAACTGCGTCGCGCCGGGA
GGCGTCAAGACTGACATCTGCCAAGACGTAAGCTAA

Peptide Sequence

PEP ID

Os11t0652900-00
PEP Infomation

pep chromosome:IRGSP-1.0:11:26058375:26059083:-1 gene:Os11g0652900 transcript:Os11t0652900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to tropinone reductase 2. (Os11t0652900-00)
Sequence

MAAAAARSIPDRWTLAGATALVTGGSKGIGHAIVEELAGFGARVHTCARNAAELEASRRR
WEERGLRVTATVCDVSARGDRERLVAAAAGEFGGRLDILVNNVGRTMFRAAAACSGEDFA
LLVATNLESCFHLSQLAHPLLLAAGGGGGCVVNISSVAGTVGIPALAVYSMTKGGMNQLT
RSLAAEWAGDGIRVNCVAPGGVKTDICQDVS

Transcript Sequence

Transcript ID

Os11t0652900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:26058375:26059083:-1 gene:Os11g0652900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to tropinone reductase 2. (Os11t0652900-00)
Sequence

ATGGCGGCCGCCGCAGCTCGCAGCATCCCGGACCGGTGGACCCTCGCCGGCGCGACGGCG
CTCGTCACCGGCGGCAGCAAAGGCATCGGGCATGCGATAGTGGAGGAGCTCGCCGGATTC
GGGGCGCGCGTGCACACGTGCGCCCGGAACGCGGCGGAGCTGGAGGCGAGCCGGCGGCGG
TGGGAGGAGCGGGGGCTCCGCGTCACCGCCACCGTCTGCGACGTCTCCGCGCGCGGCGAC
CGGGAGAGGCTGGTCGCCGCCGCGGCGGGGGAGTTCGGCGGCAGGCTGGACATCCTCGTC
AACAACGTCGGCCGGACCATGTTCCGGGCGGCGGCGGCGTGCTCCGGCGAGGACTTCGCC
CTGCTCGTGGCCACCAACCTCGAGTCCTGCTTCCACCTCTCCCAGCTCGCGCACCCGCTC
CTGCTCGCCGCCGGCGGCGGAGGCGGCTGCGTGGTGAACATCTCCTCCGTCGCCGGCACC
GTCGGCATACCGGCGCTGGCCGTGTACTCCATGACCAAGGGCGGCATGAACCAGCTCACC
CGGAGCCTCGCCGCCGAGTGGGCCGGCGACGGCATACGTGTCAACTGCGTCGCGCCGGGA
GGCGTCAAGACTGACATCTGCCAAGACGTAAGCTAA