Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0642800-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:25492192:25496841:1 gene:Os11g0642800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Glutathione synthetase. (Os11t0642800-01)
Sequence

ATGTCCTCCTACGTCACCACCCCCCACCACCACCACCACCATGGCTGCTGCTCCGGCAGC
CGCCGCCTCCAGGCACCGGCGCCTCCCGCCCGCCCCCGCCTCGTCGTCGCCGCCGCCGCG
AGACACGTGGCCCTCCCCCCCCGCCGCGCGGTGGCCTCGAGGGCGATGAGCGCCGAGGCG
CCCCTGGGTGTCGCGCCGGCGGCGGCGGAAGAGGAGATGGCGGCGGTGGTGGACGAGATG
GCGGAGGAGGCCGCCGTCTGGTGCGCCGTGCACGGGCTCGTCGTCGGCGACCGCGCGGAA
CCGAGATCAGGAACTATTCCTGGTGTTGGTCTGGTTCATGCTCCATTTGCGTTACTTCCA
ACACGTTTTCCAGCATCTTTTTGGAAGCAAGCACGTGAACTGGCTCCTATTTTCAATGAT
CTTGTGGATCGTGTGAGCTTGGATGGCGAGTTTTTGCAAGACTCCTTATCTAGAACAAGA
CAAGTTGATGATTTCACTTCTAGGCTCTTAGACATTCATGCGAAGATGATGGAAGTAAAT
AAGGAGGAGGATATCCGTTTAGGGTTGCATCGATCTGATTACATGCTGGATTCTGGAACC
AATTCACTTCTCCAAATTGAGCTCAACACTATTTCATCATCATTTCCTGGTCTTAGTTCC
CTTGTAAGCGAACTTCACAGGACCCTACTTAATCGACATGGCAAGGTTTTAGGCCTTGAT
TCCAAAAGGATTCCTCAGAACTGGGCTGCCACCCAATTTGCTGAAGCATTGAGCATGGCT
TGGACTGAGTTTAATAACAAGAGTGCTGTAATTATGATGGTTGTTCAACCTGAAGAAAGA
AACATGTATGACCAATACTGGCTTATCAATCATTTGAAGGAATCGCATGGTGTGAAGACC
ATTAGGAAAACATTGGCACAGGTAGAGGCTGAAGGGCAGGTTCTTCCAGATGGAACGCTT
GTGGTAGACGGACAGACAGTTTCTGTTGTGTATTTCAGAGCTGGATATTCTCCAAATGAT
TATCCTTCTGAAGCGGAATGGAGAGCCAGGCTTTTGATGGAGCAGTCATCTGCTATAAAG
TGCCCTTCAATATCCTACCATTTAGTGGGAACGAAAAAGATCCAGCAAGAACTAGCAAAA
CCTAATATTCTTGAAAGATTCCTTAACAACAAGGAGGACATTGCCAAGCTACGGAAATGC
TTTGCAGGCTTATGGAGTTTAGATAATGAAGAAATAGTGAAGACTGCAATAGAAAAACCT
GACTTGTTTGTCCTGAAACCTCAGCGAGAAGGCGGAGGAAACAACATATATGGTTATGAT
CTGCGAGAAACGCTGGTCAGACTCCAGAAGGAGCAGGGAGAGGCACTTGCAGCCTACATA
CTGATGCAAAGGATTTTTCCAAGAGCTTCTCTTACTCATCTGGTCCAGGGTGGCGTTTGC
TTTGAGGACCTTACAATATCTGAGCTTGGGATATTTGGAGCCTATTTGCGGAACAAAGAT
AAGGTAGTCCTGAATAATCAGTGTGGTTACTTGATGCGCACCAAAGTTTCTTCATCAAAC
GAAGGTGGAGTTGCTGCAGGATTTGCTGTTCTGGATAGTATTCTCCTCACAGATGAGTGG
TAA

Peptide Sequence

PEP ID

Os11t0642800-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:25492192:25496841:1 gene:Os11g0642800 transcript:Os11t0642800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Glutathione synthetase. (Os11t0642800-01)
Sequence

MSSYVTTPHHHHHHGCCSGSRRLQAPAPPARPRLVVAAAARHVALPPRRAVASRAMSAEA
PLGVAPAAAEEEMAAVVDEMAEEAAVWCAVHGLVVGDRAEPRSGTIPGVGLVHAPFALLP
TRFPASFWKQARELAPIFNDLVDRVSLDGEFLQDSLSRTRQVDDFTSRLLDIHAKMMEVN
KEEDIRLGLHRSDYMLDSGTNSLLQIELNTISSSFPGLSSLVSELHRTLLNRHGKVLGLD
SKRIPQNWAATQFAEALSMAWTEFNNKSAVIMMVVQPEERNMYDQYWLINHLKESHGVKT
IRKTLAQVEAEGQVLPDGTLVVDGQTVSVVYFRAGYSPNDYPSEAEWRARLLMEQSSAIK
CPSISYHLVGTKKIQQELAKPNILERFLNNKEDIAKLRKCFAGLWSLDNEEIVKTAIEKP
DLFVLKPQREGGGNNIYGYDLRETLVRLQKEQGEALAAYILMQRIFPRASLTHLVQGGVC
FEDLTISELGIFGAYLRNKDKVVLNNQCGYLMRTKVSSSNEGGVAAGFAVLDSILLTDEW

Transcript Sequence

Transcript ID

Os11t0642800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:25492192:25496841:1 gene:Os11g0642800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Glutathione synthetase. (Os11t0642800-01)
Sequence

GCCACCACGAACTCAATTCCACGGGACAAATTGCAGAGACCACCTCGGAATTCTCCAAAT
TCATCGCCAATGTCCTCCTACGTCACCACCCCCCACCACCACCACCACCATGGCTGCTGC
TCCGGCAGCCGCCGCCTCCAGGCACCGGCGCCTCCCGCCCGCCCCCGCCTCGTCGTCGCC
GCCGCCGCGAGACACGTGGCCCTCCCCCCCCGCCGCGCGGTGGCCTCGAGGGCGATGAGC
GCCGAGGCGCCCCTGGGTGTCGCGCCGGCGGCGGCGGAAGAGGAGATGGCGGCGGTGGTG
GACGAGATGGCGGAGGAGGCCGCCGTCTGGTGCGCCGTGCACGGGCTCGTCGTCGGCGAC
CGCGCGGAACCGAGATCAGGAACTATTCCTGGTGTTGGTCTGGTTCATGCTCCATTTGCG
TTACTTCCAACACGTTTTCCAGCATCTTTTTGGAAGCAAGCACGTGAACTGGCTCCTATT
TTCAATGATCTTGTGGATCGTGTGAGCTTGGATGGCGAGTTTTTGCAAGACTCCTTATCT
AGAACAAGACAAGTTGATGATTTCACTTCTAGGCTCTTAGACATTCATGCGAAGATGATG
GAAGTAAATAAGGAGGAGGATATCCGTTTAGGGTTGCATCGATCTGATTACATGCTGGAT
TCTGGAACCAATTCACTTCTCCAAATTGAGCTCAACACTATTTCATCATCATTTCCTGGT
CTTAGTTCCCTTGTAAGCGAACTTCACAGGACCCTACTTAATCGACATGGCAAGGTTTTA
GGCCTTGATTCCAAAAGGATTCCTCAGAACTGGGCTGCCACCCAATTTGCTGAAGCATTG
AGCATGGCTTGGACTGAGTTTAATAACAAGAGTGCTGTAATTATGATGGTTGTTCAACCT
GAAGAAAGAAACATGTATGACCAATACTGGCTTATCAATCATTTGAAGGAATCGCATGGT
GTGAAGACCATTAGGAAAACATTGGCACAGGTAGAGGCTGAAGGGCAGGTTCTTCCAGAT
GGAACGCTTGTGGTAGACGGACAGACAGTTTCTGTTGTGTATTTCAGAGCTGGATATTCT
CCAAATGATTATCCTTCTGAAGCGGAATGGAGAGCCAGGCTTTTGATGGAGCAGTCATCT
GCTATAAAGTGCCCTTCAATATCCTACCATTTAGTGGGAACGAAAAAGATCCAGCAAGAA
CTAGCAAAACCTAATATTCTTGAAAGATTCCTTAACAACAAGGAGGACATTGCCAAGCTA
CGGAAATGCTTTGCAGGCTTATGGAGTTTAGATAATGAAGAAATAGTGAAGACTGCAATA
GAAAAACCTGACTTGTTTGTCCTGAAACCTCAGCGAGAAGGCGGAGGAAACAACATATAT
GGTTATGATCTGCGAGAAACGCTGGTCAGACTCCAGAAGGAGCAGGGAGAGGCACTTGCA
GCCTACATACTGATGCAAAGGATTTTTCCAAGAGCTTCTCTTACTCATCTGGTCCAGGGT
GGCGTTTGCTTTGAGGACCTTACAATATCTGAGCTTGGGATATTTGGAGCCTATTTGCGG
AACAAAGATAAGGTAGTCCTGAATAATCAGTGTGGTTACTTGATGCGCACCAAAGTTTCT
TCATCAAACGAAGGTGGAGTTGCTGCAGGATTTGCTGTTCTGGATAGTATTCTCCTCACA
GATGAGTGGTAAAGCAGAGGGTCACTCACCATGCACCATCACACCAAATATCAAATCAAT
CTTGATAAGCATATGCTCCAGTCAACTTCAACCAGTTTCTGAGGCATTCCTGTCACACCG
TAGAATGAATAGACCAAAAAAAATCTGAAATATTCTTCTCTAGTTTCTTCTTCTCTTCTG
AAATTTTGAATTGAATCTGTCTTTTGTGATGTCATTCTTGCAGTGAGGAAGCAAGGTAGC
AAGAGTTACAATTGACAGCTAGCAGACACTGGAATGAACCTGGCTGACAGAAGGTTGCAA
TCTCAGGATTCGGTTGAGCACCAGTTTTTCTCAGCCACAGGCATACATCAATGACAGATA
AAATAACCTAAACAATTTTTGCCACAGAAGAGTAAATTACACTAGCGGTACTTAAACTTG
TAACGAAGTTTCACTTATGTCCACGAACTTGCAAAACGCGCATCGAGATCCT