Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0641500-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:25423701:25426045:1 gene:Os11g0641500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LACCASE 23 description:Cupredoxin domain containing protein. (Os11t0641500-01)
Sequence	ATGGAGAAGCTCTCCATGGTGACCTCTCTCCTCTGCGCCATCACTGTCGCGGTTCTCGCC GTGGCGGTGGTCAGCGGCGAGGCGGCTGTGGTGGAGCACACCTTCGTGGTGCACGAGATG AACGCGACGCACCTGTGCAACACGACCAAGATCTACGTGGTGAACGGACAGTTCCCGGGC CCCACGGTGGACGTGACGGAGGGCGACACGGTGGTTGTCCATGTCATCAACAAGCTGCCA TTTGGGCTTACCATCCATTGGCATGGTGTCCGCCAGATGAGGAGCTGCTGGGCTGATGGG GCTGGTTTTGTCACCGAGTGTCCTATCCCACCCGGAAACGAGCACACCTACCGCTTCAAC GTCACCGGCCAGGTCGGCACGCTGTGGTGGCACGCCCACGTCACCTGCCTCCGGGCCACC ATCAATGGTGCCTTCATCGTTCGCCCTCGTGATGGGAAGTACCCCTTCCCGACACCGGCC AAGGACGTGCCGATCATCATAGGAGAATGGTGGGAGCTTGACCTCATCGAGCTAGATAGA AGGATGATGGATGGCAACTTCGACGACAACCCGTTGTCTGCGACGATCAATGGGAAGCTC GGCGACCTCAGCAACTGCTCTCGCATGGTGGAGGAAAGCTTCATCCTCGACGTTAAGCAC GGGGAGAGCTACCTTCTCCGGGTCATCAACACTGCACTCTTCTCTGAATACTACTTCAGG GTCGCCGGCCACACGTTCACGGTGGTCGGCGCCGATGGCAACTACCTGACGCCATTTAAG ACGGACATGGTCACCGTCGCCCCTGGCGAGGCCATCGACGTGATCATGGTCGCCGACGCG CCACCGGCGCACTACCACATGATCGCGCTGGCTAACCAACCTCCGGAGCCGGACCCGCAG ATCCCGGTGTTCACCTCTCGTGGCCTTGTCCGCTACGCCGGCACCACCGCCAACAACAAC GGCCTCCCGGTACCGATGCCGATCATGCCCAACCAACACAACACCATGCCGTCCTACTAC TTCCACGCCAACCTCACCGGCCTTGCCCACCCAGAGCGCCATCGTGTCCCTATGCATGTC GACGAGCGCCTCTTCGTCACCTTGGGGCTCGGCTCCATATGCCGTGGCCAGAACACCACC TGCAAGCGGCGGCGCAGCCCGGAGACCATCGTGGTGGCCACCATGAACAACGTCTCCTTC GCCCACCCGAAAACCACCGCGCTCCTCGAGCGCTACTACGACGGCACATCGAAGGGCGTG TACACGGAGGACTTCCCCATCCGGCCGCCGCGGCCTTTCAACTACACCAACCGTGATCTC ATCCCTCCCGGCCCGCTCGAGGAGGCGTTGGAGCCGACGTTCAAGGCGACCAAGCTGAAG CGGTTCAAGTACAACACATCGGTGGAGATCATCTTCCAGAGCACCACGCTGATGCAGAGC GACTCCAACCCCATGCACCTCCATGGCTATGATGTCTTCCTCCTTGCACAGGGGCTCGGC AACTTTAACGCCAAGAGGGATGTCAGGAAGTTCAACTACCACAACCCGCAGCTTAGGAAC ACCGTGCAGGTTCCACGTGGCGGGTGGGCCGCCATTCGCTTCGTCACAGACAATCCAGGG ATGTGGTACCTACACTGTCACTTTGAGTTCCACATCATTATGGGCATGGCGACGGCGTTC ATCGTGGAGGATGGGCCGACACCAGAGACGAGCCTGCCTCCACCACCACCGGAGTTCAAG AGATGTGGCAACAATGGTCTGAGTCAACCATGA

Peptide Sequence

PEP ID	Os11t0641500-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:25423701:25426045:1 gene:Os11g0641500 transcript:Os11t0641500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LACCASE 23 description:Cupredoxin domain containing protein. (Os11t0641500-01)
Sequence	MEKLSMVTSLLCAITVAVLAVAVVSGEAAVVEHTFVVHEMNATHLCNTTKIYVVNGQFPG PTVDVTEGDTVVVHVINKLPFGLTIHWHGVRQMRSCWADGAGFVTECPIPPGNEHTYRFN VTGQVGTLWWHAHVTCLRATINGAFIVRPRDGKYPFPTPAKDVPIIIGEWWELDLIELDR RMMDGNFDDNPLSATINGKLGDLSNCSRMVEESFILDVKHGESYLLRVINTALFSEYYFR VAGHTFTVVGADGNYLTPFKTDMVTVAPGEAIDVIMVADAPPAHYHMIALANQPPEPDPQ IPVFTSRGLVRYAGTTANNNGLPVPMPIMPNQHNTMPSYYFHANLTGLAHPERHRVPMHV DERLFVTLGLGSICRGQNTTCKRRRSPETIVVATMNNVSFAHPKTTALLERYYDGTSKGV YTEDFPIRPPRPFNYTNRDLIPPGPLEEALEPTFKATKLKRFKYNTSVEIIFQSTTLMQS DSNPMHLHGYDVFLLAQGLGNFNAKRDVRKFNYHNPQLRNTVQVPRGGWAAIRFVTDNPG MWYLHCHFEFHIIMGMATAFIVEDGPTPETSLPPPPPEFKRCGNNGLSQP

Transcript Sequence

Transcript ID	Os11t0641500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:25423701:25426045:1 gene:Os11g0641500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LACCASE 23 description:Cupredoxin domain containing protein. (Os11t0641500-01)
Sequence	GAAGCATCACTTCATCACAAAACCTACCAAGCTAATTCAGCATTTCAGCTTGGTTCTATA GGTAGGAGCTGGTAAGATCACCATGGAGAAGCTCTCCATGGTGACCTCTCTCCTCTGCGC CATCACTGTCGCGGTTCTCGCCGTGGCGGTGGTCAGCGGCGAGGCGGCTGTGGTGGAGCA CACCTTCGTGGTGCACGAGATGAACGCGACGCACCTGTGCAACACGACCAAGATCTACGT GGTGAACGGACAGTTCCCGGGCCCCACGGTGGACGTGACGGAGGGCGACACGGTGGTTGT CCATGTCATCAACAAGCTGCCATTTGGGCTTACCATCCATTGGCATGGTGTCCGCCAGAT GAGGAGCTGCTGGGCTGATGGGGCTGGTTTTGTCACCGAGTGTCCTATCCCACCCGGAAA CGAGCACACCTACCGCTTCAACGTCACCGGCCAGGTCGGCACGCTGTGGTGGCACGCCCA CGTCACCTGCCTCCGGGCCACCATCAATGGTGCCTTCATCGTTCGCCCTCGTGATGGGAA GTACCCCTTCCCGACACCGGCCAAGGACGTGCCGATCATCATAGGAGAATGGTGGGAGCT TGACCTCATCGAGCTAGATAGAAGGATGATGGATGGCAACTTCGACGACAACCCGTTGTC TGCGACGATCAATGGGAAGCTCGGCGACCTCAGCAACTGCTCTCGCATGGTGGAGGAAAG CTTCATCCTCGACGTTAAGCACGGGGAGAGCTACCTTCTCCGGGTCATCAACACTGCACT CTTCTCTGAATACTACTTCAGGGTCGCCGGCCACACGTTCACGGTGGTCGGCGCCGATGG CAACTACCTGACGCCATTTAAGACGGACATGGTCACCGTCGCCCCTGGCGAGGCCATCGA CGTGATCATGGTCGCCGACGCGCCACCGGCGCACTACCACATGATCGCGCTGGCTAACCA ACCTCCGGAGCCGGACCCGCAGATCCCGGTGTTCACCTCTCGTGGCCTTGTCCGCTACGC CGGCACCACCGCCAACAACAACGGCCTCCCGGTACCGATGCCGATCATGCCCAACCAACA CAACACCATGCCGTCCTACTACTTCCACGCCAACCTCACCGGCCTTGCCCACCCAGAGCG CCATCGTGTCCCTATGCATGTCGACGAGCGCCTCTTCGTCACCTTGGGGCTCGGCTCCAT ATGCCGTGGCCAGAACACCACCTGCAAGCGGCGGCGCAGCCCGGAGACCATCGTGGTGGC CACCATGAACAACGTCTCCTTCGCCCACCCGAAAACCACCGCGCTCCTCGAGCGCTACTA CGACGGCACATCGAAGGGCGTGTACACGGAGGACTTCCCCATCCGGCCGCCGCGGCCTTT CAACTACACCAACCGTGATCTCATCCCTCCCGGCCCGCTCGAGGAGGCGTTGGAGCCGAC GTTCAAGGCGACCAAGCTGAAGCGGTTCAAGTACAACACATCGGTGGAGATCATCTTCCA GAGCACCACGCTGATGCAGAGCGACTCCAACCCCATGCACCTCCATGGCTATGATGTCTT CCTCCTTGCACAGGGGCTCGGCAACTTTAACGCCAAGAGGGATGTCAGGAAGTTCAACTA CCACAACCCGCAGCTTAGGAACACCGTGCAGGTTCCACGTGGCGGGTGGGCCGCCATTCG CTTCGTCACAGACAATCCAGGGATGTGGTACCTACACTGTCACTTTGAGTTCCACATCAT TATGGGCATGGCGACGGCGTTCATCGTGGAGGATGGGCCGACACCAGAGACGAGCCTGCC TCCACCACCACCGGAGTTCAAGAGATGTGGCAACAATGGTCTGAGTCAACCATGAGGGTT TTGAAGAGAAAGTCCAAATTTTTTACTGCTACGAGTAATAAAAAATAAAAAATGCATGGA TTTGTAGTATGCATTGTATTGGTGATGATTATTCTTACTGTAAAAGAGATTTACTATTCT TTTTTGGTATTCATTGTTGTAAGGTGGCAAAGTGTAAGTAAATCCATTTGGATTTAATTT ATGAAGAAGAGAACAATTATTTATG