Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0640600-00
CDS Infomation

cds chromosome:IRGSP-1.0:11:25338884:25345347:-1 gene:Os11g0640600 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os11t0640600-00)
Sequence

ATGGATGTCGCAGCAGATCTGCAGAGGGTGATCGACATTCTGAGCTCGGCGCGCATGGAG
AGCCAGAGCCGGCTGCTGGAATTGGACGCCCTGCTCGGCGCAGTGCGTGACTCCATCGCG
CGCTTCCCCAACATCATCAACAATATCATCGACAGGCGAGATAAATGCCTTGTGTTGGCA
ACATGTGGAGATTATGATCGCCGTCTCGAGGAAGCGAGAAGATTGTTCGCCCACCTTCGC
GGCGAGCTTGAGGCAATCCTGAGCAGGCAGGTGGAACCAGATTCTTGGTATCAGGTAACC
GCTCTCCACATTAGCAACCTCTTCTTTCGCCGTGCCACCGTCCGTGAGCTTAGGAGTTTG
TTGAAGAAGCTTGCGGGGCTAGAGGAATCACTTGCCTCCGTGCCAGAGTCTGGAGAGAGT
ATGGACGAAGACTTGTATCCAGTAGGAACCTCGACGAACGATGTGGGTCCCGACGACTAT
GTCAAAAGTCCAATGGTGGGGAGATCAGAGCTGGCGGAGAAGATGCTGGGGAGGATGTTG
CTCGCCGACGGCGAGGAGGAGGAGGGCGACGGGCCGCTGGTTTTACCGATAGTGGGAGGG
CCTGGGATGGGAAAGACATATCTAGCCCGGTTCCTATTCAACGACGATAGGGTCAAGCAG
GCGTTCCAGGTGCGGCATTGGGTGCATCTCTCACCACATTTTGATCTATCTGAGGGTGTC
AGTACGATTACAAGCAGCTGGTTGGTCGATAGGAAGGATGGGCCATCCTATCTGCAACAA
GTAATTTCCAGTGTTCTAAGAGGAGGAGCGAAATACTTGGTCGTCCTGGATAACGTGTGG
AATGTTGGCCAGCACGACTGGCCTGAATGGGACAACCTTATGCTGGCATTCCCCCCAAAT
GGCAGGATCCTTCTCACCACACGAACTCCCTCTATCATACCACGGACGGCCGTCGTCATG
CGAACCACTGAGGCTTACTTCTTGCAACCACTGGACCAGGAATCCTCCAAACACGTCATG
GACATGTACCTTCCCCCTTATCACGAGTACGGTATCAAGTTGGTCGAAAAATGTGCCGGT
GTGCCTCTGCTGTTAGAGTACACATCATTTCTTATACTTCAAAGGGACCAGCTAACTCTG
ATCCGGTGGAAAAGAGTTCTGGAAGGTTCTTGGAGGATTCAACAAGAGGAAGAACTGACT
GATGTCTTTCAGAGAGCTTATGCCAGTTACCAGCATCTCTCGTCCGAATTGCGGAATTGT
TTTCTTTTTTGCTCGCTGTTCCCATTGGACTTCAACTTCACTGCTGAAGAACTGGCTGAT
CTTTTTGCTGCCAAAGGCTTTATACCGTCGACCGTGCCTGAAGCCCAACGAATACGATTC
CTCCAACAGTTTCTTGATGAGTGCTTTTATCCGGTGGAAGAATATGATCATGGAGGTAGG
CATATGTACAGGATGCACAAGATATTGCACATCTTCGTGCAATATGCAGACAGAGTTTCC
AGCTCAATCATCAGAGTTGGTCAGTTCAATGCTGTTCAAGACATTATCTTGTCTACTCGG
AGTGCATCACTGCTCGTTCATCCTTCCACGGAATCGCTGCCAATTTGCATGTCCCAATTG
AAGATGTTAAAGACATTTATTTTGCTACAGGAAGGGAAAACGTGCTCATCTGATCGGCAG
TGTGAGATCAAACAGATTCCCCAAGAATTGTGTCAAACACTTCGACATCTTGAAGTCCTC
AGTTTAGAAGCCACTAAGATCAGGAAGCTCCCTAATAAATTCGACCTACTCTTCCACTTG
ACATTTCTCAACCTATCAGGGACAGATATCAGAGTCATCCCCAGCTCAATATCCAAACTA
CAACTTCTGCATACTCTGAAATTATCCTACTGTGGAAAGCTCCAAAAACTGCATCGAAAT
ATATGCAGGCTTTCTCGGCTACACAAGTTAGACCTTGAAGGATGCCGCTATCTTTCTGAA
TTACCTCAGAACATCAGTAAAATTAATAGCCTTGAGTATCTTAGTGTTCTTGGATGTGCA
TCACTTACTCGAATGCCTCACAGATTCGGAAATCTTAAAAACCTTCAGACATTGCTAGGG
TATGTTGTTTCAAACAGCAATGTAGTTATGCTGTCAGAGCTGCAACCTTTGGCAAACCTG
CACAGGCTAAGCTTAGAAAGACTTGAAAATGTTTTGGATCTGAAAGATGCAAGAGATGCC
ATGCTGCAAGATAAGCTAGAACTCGAATCATTGGCACTGAGGTGGAACATGGATACTGAA
CATGCCAATACAGCAGCCTATGAACTAATTGAGATTCTTCGACCGCCACAACAGCTGAAA
GAGCTGGAGCTTGTTGCGTATGAAGGTGATAAGCTTCCATCTTGGATGACACACACCGAA
CCATATCTTAAATCTCTGGTTGAGATAAGACTGATTAATCTCACAGAATGTAAATCCTTA
CCTCCTCTGGGGATACTACCACGTATGAGGATAGCCGAGATAAGTGGAGCTGAAAGTATC
ACCTGCATTGACAACAATTTCTATGGTCACAATGGCACATTCCCCTCTCTGGAGAAGTTA
ACTTTCTCTTATATGCATAACCTTGAACTCTGGGAACAGGCAGACAGGACGGGTGCGTTT
CCTTGTCTTGCAGAAGTGGAAATTATTCACTGCCCCAAATTGAGTGCTTTGCATATGGAG
CTTCCATCTGTTGAAAAGTTGACCTTGTGGATGAACAACAAGATGTTATATGGTTCAAAA
GGAGGCCTTAGAAGTGTGGCAAGAAATCTGGAACAAATATCAATCTGTTTTGGGGAAGAG
CTGGAATCTTCTTCTAACTTTGAGGGTTTGCAAGATCTCGCCAGGCTCAAGAAGTTAAAC
ATATGCGGGTGTCATGAGCTGACATGCCTCCCGCAAGGTCTGCAACATATTTCTTCTATT
AGAAGCTTGGCAATTGACAATTGCAACAAACTGGAGACTTTACCAGAATGGTTAGAGCAC
CAACCTTCTCTCCAAGTTATACGTTTGTCGGGCTGTCCTGCGCTACATTCTATTTCCGAA
GGCTTGCTACGTGGCAACAGTATCGAAATACATATGAATGACTGCCCCAATTTGACAGAA
CAATCATCAGGAGGATATTCTACTACTCAAGTCAAGAAGCACAAAGAAATCATTCGGCTT
GTTGAAGAAACCATCAGTGAAGATGACTATACCATCCTTGGAAACACCTTACTTGAAGAT
GATACTTATCTAGAGGAGGCTTTTTTTGGTGCTCGAGTAGATACTAGGAGGCACCACGTT
TCCTAA

Peptide Sequence

PEP ID

Os11t0640600-00
PEP Infomation

pep chromosome:IRGSP-1.0:11:25338884:25345347:-1 gene:Os11g0640600 transcript:Os11t0640600-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os11t0640600-00)
Sequence

MDVAADLQRVIDILSSARMESQSRLLELDALLGAVRDSIARFPNIINNIIDRRDKCLVLA
TCGDYDRRLEEARRLFAHLRGELEAILSRQVEPDSWYQVTALHISNLFFRRATVRELRSL
LKKLAGLEESLASVPESGESMDEDLYPVGTSTNDVGPDDYVKSPMVGRSELAEKMLGRML
LADGEEEEGDGPLVLPIVGGPGMGKTYLARFLFNDDRVKQAFQVRHWVHLSPHFDLSEGV
STITSSWLVDRKDGPSYLQQVISSVLRGGAKYLVVLDNVWNVGQHDWPEWDNLMLAFPPN
GRILLTTRTPSIIPRTAVVMRTTEAYFLQPLDQESSKHVMDMYLPPYHEYGIKLVEKCAG
VPLLLEYTSFLILQRDQLTLIRWKRVLEGSWRIQQEEELTDVFQRAYASYQHLSSELRNC
FLFCSLFPLDFNFTAEELADLFAAKGFIPSTVPEAQRIRFLQQFLDECFYPVEEYDHGGR
HMYRMHKILHIFVQYADRVSSSIIRVGQFNAVQDIILSTRSASLLVHPSTESLPICMSQL
KMLKTFILLQEGKTCSSDRQCEIKQIPQELCQTLRHLEVLSLEATKIRKLPNKFDLLFHL
TFLNLSGTDIRVIPSSISKLQLLHTLKLSYCGKLQKLHRNICRLSRLHKLDLEGCRYLSE
LPQNISKINSLEYLSVLGCASLTRMPHRFGNLKNLQTLLGYVVSNSNVVMLSELQPLANL
HRLSLERLENVLDLKDARDAMLQDKLELESLALRWNMDTEHANTAAYELIEILRPPQQLK
ELELVAYEGDKLPSWMTHTEPYLKSLVEIRLINLTECKSLPPLGILPRMRIAEISGAESI
TCIDNNFYGHNGTFPSLEKLTFSYMHNLELWEQADRTGAFPCLAEVEIIHCPKLSALHME
LPSVEKLTLWMNNKMLYGSKGGLRSVARNLEQISICFGEELESSSNFEGLQDLARLKKLN
ICGCHELTCLPQGLQHISSIRSLAIDNCNKLETLPEWLEHQPSLQVIRLSGCPALHSISE
GLLRGNSIEIHMNDCPNLTEQSSGGYSTTQVKKHKEIIRLVEETISEDDYTILGNTLLED
DTYLEEAFFGARVDTRRHHVS

Transcript Sequence

Transcript ID

Os11t0640600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:25338884:25345347:-1 gene:Os11g0640600 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os11t0640600-00)
Sequence

AGCCGAGAAGCAGACTGGGAGAGAGGTGTTAGAGCGTTAAGAGTATCAGGGAGCCATGGA
TGTCGCAGCAGATCTGCAGAGGGTGATCGACATTCTGAGCTCGGCGCGCATGGAGAGCCA
GAGCCGGCTGCTGGAATTGGACGCCCTGCTCGGCGCAGTGCGTGACTCCATCGCGCGCTT
CCCCAACATCATCAACAATATCATCGACAGGCGAGATAAATGCCTTGTGTTGGCAACATG
TGGAGATTATGATCGCCGTCTCGAGGAAGCGAGAAGATTGTTCGCCCACCTTCGCGGCGA
GCTTGAGGCAATCCTGAGCAGGCAGGTGGAACCAGATTCTTGGTATCAGGTAACCGCTCT
CCACATTAGCAACCTCTTCTTTCGCCGTGCCACCGTCCGTGAGCTTAGGAGTTTGTTGAA
GAAGCTTGCGGGGCTAGAGGAATCACTTGCCTCCGTGCCAGAGTCTGGAGAGAGTATGGA
CGAAGACTTGTATCCAGTAGGAACCTCGACGAACGATGTGGGTCCCGACGACTATGTCAA
AAGTCCAATGGTGGGGAGATCAGAGCTGGCGGAGAAGATGCTGGGGAGGATGTTGCTCGC
CGACGGCGAGGAGGAGGAGGGCGACGGGCCGCTGGTTTTACCGATAGTGGGAGGGCCTGG
GATGGGAAAGACATATCTAGCCCGGTTCCTATTCAACGACGATAGGGTCAAGCAGGCGTT
CCAGGTGCGGCATTGGGTGCATCTCTCACCACATTTTGATCTATCTGAGGGTGTCAGTAC
GATTACAAGCAGCTGGTTGGTCGATAGGAAGGATGGGCCATCCTATCTGCAACAAGTAAT
TTCCAGTGTTCTAAGAGGAGGAGCGAAATACTTGGTCGTCCTGGATAACGTGTGGAATGT
TGGCCAGCACGACTGGCCTGAATGGGACAACCTTATGCTGGCATTCCCCCCAAATGGCAG
GATCCTTCTCACCACACGAACTCCCTCTATCATACCACGGACGGCCGTCGTCATGCGAAC
CACTGAGGCTTACTTCTTGCAACCACTGGACCAGGAATCCTCCAAACACGTCATGGACAT
GTACCTTCCCCCTTATCACGAGTACGGTATCAAGTTGGTCGAAAAATGTGCCGGTGTGCC
TCTGCTGTTAGAGTACACATCATTTCTTATACTTCAAAGGGACCAGCTAACTCTGATCCG
GTGGAAAAGAGTTCTGGAAGGTTCTTGGAGGATTCAACAAGAGGAAGAACTGACTGATGT
CTTTCAGAGAGCTTATGCCAGTTACCAGCATCTCTCGTCCGAATTGCGGAATTGTTTTCT
TTTTTGCTCGCTGTTCCCATTGGACTTCAACTTCACTGCTGAAGAACTGGCTGATCTTTT
TGCTGCCAAAGGCTTTATACCGTCGACCGTGCCTGAAGCCCAACGAATACGATTCCTCCA
ACAGTTTCTTGATGAGTGCTTTTATCCGGTGGAAGAATATGATCATGGAGGTAGGCATAT
GTACAGGATGCACAAGATATTGCACATCTTCGTGCAATATGCAGACAGAGTTTCCAGCTC
AATCATCAGAGTTGGTCAGTTCAATGCTGTTCAAGACATTATCTTGTCTACTCGGAGTGC
ATCACTGCTCGTTCATCCTTCCACGGAATCGCTGCCAATTTGCATGTCCCAATTGAAGAT
GTTAAAGACATTTATTTTGCTACAGGAAGGGAAAACGTGCTCATCTGATCGGCAGTGTGA
GATCAAACAGATTCCCCAAGAATTGTGTCAAACACTTCGACATCTTGAAGTCCTCAGTTT
AGAAGCCACTAAGATCAGGAAGCTCCCTAATAAATTCGACCTACTCTTCCACTTGACATT
TCTCAACCTATCAGGGACAGATATCAGAGTCATCCCCAGCTCAATATCCAAACTACAACT
TCTGCATACTCTGAAATTATCCTACTGTGGAAAGCTCCAAAAACTGCATCGAAATATATG
CAGGCTTTCTCGGCTACACAAGTTAGACCTTGAAGGATGCCGCTATCTTTCTGAATTACC
TCAGAACATCAGTAAAATTAATAGCCTTGAGTATCTTAGTGTTCTTGGATGTGCATCACT
TACTCGAATGCCTCACAGATTCGGAAATCTTAAAAACCTTCAGACATTGCTAGGGTATGT
TGTTTCAAACAGCAATGTAGTTATGCTGTCAGAGCTGCAACCTTTGGCAAACCTGCACAG
GCTAAGCTTAGAAAGACTTGAAAATGTTTTGGATCTGAAAGATGCAAGAGATGCCATGCT
GCAAGATAAGCTAGAACTCGAATCATTGGCACTGAGGTGGAACATGGATACTGAACATGC
CAATACAGCAGCCTATGAACTAATTGAGATTCTTCGACCGCCACAACAGCTGAAAGAGCT
GGAGCTTGTTGCGTATGAAGGTGATAAGCTTCCATCTTGGATGACACACACCGAACCATA
TCTTAAATCTCTGGTTGAGATAAGACTGATTAATCTCACAGAATGTAAATCCTTACCTCC
TCTGGGGATACTACCACGTATGAGGATAGCCGAGATAAGTGGAGCTGAAAGTATCACCTG
CATTGACAACAATTTCTATGGTCACAATGGCACATTCCCCTCTCTGGAGAAGTTAACTTT
CTCTTATATGCATAACCTTGAACTCTGGGAACAGGCAGACAGGACGGGTGCGTTTCCTTG
TCTTGCAGAAGTGGAAATTATTCACTGCCCCAAATTGAGTGCTTTGCATATGGAGCTTCC
ATCTGTTGAAAAGTTGACCTTGTGGATGAACAACAAGATGTTATATGGTTCAAAAGGAGG
CCTTAGAAGTGTGGCAAGAAATCTGGAACAAATATCAATCTGTTTTGGGGAAGAGCTGGA
ATCTTCTTCTAACTTTGAGGGTTTGCAAGATCTCGCCAGGCTCAAGAAGTTAAACATATG
CGGGTGTCATGAGCTGACATGCCTCCCGCAAGGTCTGCAACATATTTCTTCTATTAGAAG
CTTGGCAATTGACAATTGCAACAAACTGGAGACTTTACCAGAATGGTTAGAGCACCAACC
TTCTCTCCAAGTTATACGTTTGTCGGGCTGTCCTGCGCTACATTCTATTTCCGAAGGCTT
GCTACGTGGCAACAGTATCGAAATACATATGAATGACTGCCCCAATTTGACAGAACAATC
ATCAGGAGGATATTCTACTACTCAAGTCAAGAAGCACAAAGAAATCATTCGGCTTGTTGA
AGAAACCATCAGTGAAGATGACTATACCATCCTTGGAAACACCTTACTTGAAGATGATAC
TTATCTAGAGGAGGCTTTTTTTGGTGCTCGAGTAGATACTAGGAGGCACCACGTTTCCTA
ATGTTAATAGAACATGGGCATGTTTGGATGTACTTAATGTTAATCTTATTAAAACTAGCT
GGGTGGCTCGCGCAATTGTGCGGCTAGCACCCATATAAAATTATCTATTTT