Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0640000-00
CDS Infomation

cds chromosome:IRGSP-1.0:11:25316103:25318049:-1 gene:Os11g0640000 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os11t0640000-00)
Sequence

ATGTCCACTCCTGAAGCTGAAGCTGAAGGTGAAGGTGGATGCATCCTCTTCTCCAAGTAC
ATCGACGACGGCATCCTCACCCCTCTCCTCTCCAGCCTGCAGGTCATCGGCGACGCCAAG
AGCTTCCGCGGCGCTGAGAGCAGCTCCGACCTCGCTCAGCTCGACAGCATCCGTGACATG
ATGAGAGAACTCCAAGCTATCTTTGTCAAGATGGGCGAGAATGAGAGGCGCATCGTCCAC
CTCTTCGACCCCATCGAGGAGCTCGTCGACGACGTACTCAATTCCCTCGCCGCCGGCGGC
GAGATCTCCACGCTCCAGCCGAAGCTCGCCGGTGTCGGAGTACAGATTGGCATCATCAGG
GAGGCAATCTCAGGATCCTATAAGATAAAGATACAAGAGGAACCATCTCCGGACAGAGGA
AGGGATGTGGAGGATTCGGCTTCTGCGCCGACGATGGCAGGGATAAGGAGATGTGTCCGT
GACGGCGAGCAGATGGCGCACCTGCGGCGAGCCGTGCACGGTATGGATGAGCAGTTGAGG
CATTGCCTCCTCTGCCTTGCAGCCTTCCCCGAGGGCGCCGTCATAAAAAAGCGGCTCCTC
ATCCACTGGTGGATCGGCGAAAAGTTCGTGTCATCCTTGGAGGACGGCAATGAGTTGTTC
CAGCAGCTCGTCGACTTGCGGTTCGTGCGCACAGTCCGCCGCCGGGGGCACTGCGACACC
GCCCACGCGTGCACCGTGCACCCGTGGATCCGCAGGATGCTCGTGGCCGTTGCAAGGAGC
AGCGCGTTCTTGGAGATTGATCCGGATGGCAATGGCGCCTCCGCCTCAAACAACGATTTC
TCTAGGACGCACCGCGCATGCCTGCACGATGGCGGGCTGCTCCAGGGCTCCAGGTTCCAC
CCGCAGCTCTCCACGATCTACAACGTTGGCCAGAGCTATGTCAAGCTGAGCACCGCGTGG
TTCACCTACAGATCGCAACTCGGCACGGTGCAGCTCGGGCAGTGGCGGGTGGCTGACCCA
GTCGACCAGATTGCCTATCCAAGGAAGAGCCACATCGAGCTGATCGACGACCACCACCTC
AAGGGGATCGGGGCGTGCAAGAACCTGAGGTACCTCAGCTTGAGAGGCATATCGAGAATT
ATGGCCATCCCGGCTGCCATTGGAGAACTGGCCGAGCTGGTCGTGTTGGATCTCAGGGCG
TGCCACGATCTGCAGGTGCTGGCAAAGGAGATCACCAAGCTGCAGAAGCTCCAGTATCTG
GATGTCTCCGAGTGCTACCTGCTCGTTGATATGCCCGAGGGATTCAACAAGATGTCTCAG
CTCCAAGTCCTCAAAGGGTTTTTGGTAGTAAACTCTAACAAAAGAAACACCTGCAATCTG
GGCGAGTTGGTAAGCTTGAGCAACCTTCGCAAACTTAGCATCAGTGTTAGCAAGAAACTG
AAGCGTGCAGAAGATGAGCTGAAAGTGCTTGCCAATTTTGCCAGTCTCGCATCACTGAAG
ATTACATGGGGAATGGTATCTCCACGAGATGCTGCCGACGAATCAGATGCTGCAAAATTT
AACCTTGTTCTTCCCTCTAATCTTTCAAAGCTGGATCTCTACTGCTTCCCGTCGAGACAA
TTTGGGACGATTAGTTCTGACAGTTTAAAGAAACTGTATTTTACTGGTGGGAAGTTGCAT
AGTCTGGAAATTCAGAATGGGGAGTGCAAAGTAGAGGTGCTGCGCTTGAGATGCCTCAAG
GATCTGCAGTTTTGTTGGGAGGAATTGCGTGAACTGTATCCAATGCTGGAGTTTGTCGAA
GCTCAGCACTGCTCAGGAGTAGCTAATTGGCCGCTAGACAACAATAAAGTATGGACGAAG
GATGCTGAAACCAGTAATGCTGCTTCTGCACAGTCTGAAGAACCAACTGCGCCTGATGTT
TGTCCTGAAATTGTGGAAGAGGGATAA

Peptide Sequence

PEP ID

Os11t0640000-00
PEP Infomation

pep chromosome:IRGSP-1.0:11:25316103:25318049:-1 gene:Os11g0640000 transcript:Os11t0640000-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os11t0640000-00)
Sequence

MSTPEAEAEGEGGCILFSKYIDDGILTPLLSSLQVIGDAKSFRGAESSSDLAQLDSIRDM
MRELQAIFVKMGENERRIVHLFDPIEELVDDVLNSLAAGGEISTLQPKLAGVGVQIGIIR
EAISGSYKIKIQEEPSPDRGRDVEDSASAPTMAGIRRCVRDGEQMAHLRRAVHGMDEQLR
HCLLCLAAFPEGAVIKKRLLIHWWIGEKFVSSLEDGNELFQQLVDLRFVRTVRRRGHCDT
AHACTVHPWIRRMLVAVARSSAFLEIDPDGNGASASNNDFSRTHRACLHDGGLLQGSRFH
PQLSTIYNVGQSYVKLSTAWFTYRSQLGTVQLGQWRVADPVDQIAYPRKSHIELIDDHHL
KGIGACKNLRYLSLRGISRIMAIPAAIGELAELVVLDLRACHDLQVLAKEITKLQKLQYL
DVSECYLLVDMPEGFNKMSQLQVLKGFLVVNSNKRNTCNLGELVSLSNLRKLSISVSKKL
KRAEDELKVLANFASLASLKITWGMVSPRDAADESDAAKFNLVLPSNLSKLDLYCFPSRQ
FGTISSDSLKKLYFTGGKLHSLEIQNGECKVEVLRLRCLKDLQFCWEELRELYPMLEFVE
AQHCSGVANWPLDNNKVWTKDAETSNAASAQSEEPTAPDVCPEIVEEG

Transcript Sequence

Transcript ID

Os11t0640000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:25316103:25318049:-1 gene:Os11g0640000 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os11t0640000-00)
Sequence

ATGTCCACTCCTGAAGCTGAAGCTGAAGGTGAAGGTGGATGCATCCTCTTCTCCAAGTAC
ATCGACGACGGCATCCTCACCCCTCTCCTCTCCAGCCTGCAGGTCATCGGCGACGCCAAG
AGCTTCCGCGGCGCTGAGAGCAGCTCCGACCTCGCTCAGCTCGACAGCATCCGTGACATG
ATGAGAGAACTCCAAGCTATCTTTGTCAAGATGGGCGAGAATGAGAGGCGCATCGTCCAC
CTCTTCGACCCCATCGAGGAGCTCGTCGACGACGTACTCAATTCCCTCGCCGCCGGCGGC
GAGATCTCCACGCTCCAGCCGAAGCTCGCCGGTGTCGGAGTACAGATTGGCATCATCAGG
GAGGCAATCTCAGGATCCTATAAGATAAAGATACAAGAGGAACCATCTCCGGACAGAGGA
AGGGATGTGGAGGATTCGGCTTCTGCGCCGACGATGGCAGGGATAAGGAGATGTGTCCGT
GACGGCGAGCAGATGGCGCACCTGCGGCGAGCCGTGCACGGTATGGATGAGCAGTTGAGG
CATTGCCTCCTCTGCCTTGCAGCCTTCCCCGAGGGCGCCGTCATAAAAAAGCGGCTCCTC
ATCCACTGGTGGATCGGCGAAAAGTTCGTGTCATCCTTGGAGGACGGCAATGAGTTGTTC
CAGCAGCTCGTCGACTTGCGGTTCGTGCGCACAGTCCGCCGCCGGGGGCACTGCGACACC
GCCCACGCGTGCACCGTGCACCCGTGGATCCGCAGGATGCTCGTGGCCGTTGCAAGGAGC
AGCGCGTTCTTGGAGATTGATCCGGATGGCAATGGCGCCTCCGCCTCAAACAACGATTTC
TCTAGGACGCACCGCGCATGCCTGCACGATGGCGGGCTGCTCCAGGGCTCCAGGTTCCAC
CCGCAGCTCTCCACGATCTACAACGTTGGCCAGAGCTATGTCAAGCTGAGCACCGCGTGG
TTCACCTACAGATCGCAACTCGGCACGGTGCAGCTCGGGCAGTGGCGGGTGGCTGACCCA
GTCGACCAGATTGCCTATCCAAGGAAGAGCCACATCGAGCTGATCGACGACCACCACCTC
AAGGGGATCGGGGCGTGCAAGAACCTGAGGTACCTCAGCTTGAGAGGCATATCGAGAATT
ATGGCCATCCCGGCTGCCATTGGAGAACTGGCCGAGCTGGTCGTGTTGGATCTCAGGGCG
TGCCACGATCTGCAGGTGCTGGCAAAGGAGATCACCAAGCTGCAGAAGCTCCAGTATCTG
GATGTCTCCGAGTGCTACCTGCTCGTTGATATGCCCGAGGGATTCAACAAGATGTCTCAG
CTCCAAGTCCTCAAAGGGTTTTTGGTAGTAAACTCTAACAAAAGAAACACCTGCAATCTG
GGCGAGTTGGTAAGCTTGAGCAACCTTCGCAAACTTAGCATCAGTGTTAGCAAGAAACTG
AAGCGTGCAGAAGATGAGCTGAAAGTGCTTGCCAATTTTGCCAGTCTCGCATCACTGAAG
ATTACATGGGGAATGGTATCTCCACGAGATGCTGCCGACGAATCAGATGCTGCAAAATTT
AACCTTGTTCTTCCCTCTAATCTTTCAAAGCTGGATCTCTACTGCTTCCCGTCGAGACAA
TTTGGGACGATTAGTTCTGACAGTTTAAAGAAACTGTATTTTACTGGTGGGAAGTTGCAT
AGTCTGGAAATTCAGAATGGGGAGTGCAAAGTAGAGGTGCTGCGCTTGAGATGCCTCAAG
GATCTGCAGTTTTGTTGGGAGGAATTGCGTGAACTGTATCCAATGCTGGAGTTTGTCGAA
GCTCAGCACTGCTCAGGAGTAGCTAATTGGCCGCTAGACAACAATAAAGTATGGACGAAG
GATGCTGAAACCAGTAATGCTGCTTCTGCACAGTCTGAAGAACCAACTGCGCCTGATGTT
TGTCCTGAAATTGTGGAAGAGGGATAA