Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0637800-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:25199882:25206038:-1 gene:Os11g0637800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1. (Os11t0637800-01)
Sequence

ATGGCGGTCCCACTCGTGCTCGTCGTGCTCCCGCTCGGCCTCCTCTTCCTCCTCTCCGGC
CTCATCATCAACGCCATCCAGGCCGTCCTGTTTCTCTCGATAAGGCCGTTCTCGAAGAGC
TTGTACCGGCGGATCAACAGGTTCTTGGCCGAGCTGCTGTGGCTTCAGCTGGTCTGGCTT
GTGGATTGGTGGGCAGGAGTTAAGATACAACTGCATGCTGATGACGAAACTTACAAGGCA
ATGGGGAATGAGCATGCACTTGTCATATCAAATCATCGGAGCGATATCGATTGGCTTATT
GGGTGGATTTTGGCACAGCGCTCAGGATGCCTTGGAAGTACACTTGCTGTTATGAAGAAA
TCATCGAAATTCCTTCCAGTTATTGGCTGGTCCATGTGGTTTGCAGAATACCTCTTTTTG
GAAAGGAGCTGGGCAAAGGATGAAAAGACATTGAAATGGGGCCTCCAAAGGTTGAAGGAC
TTCCCCAGACCATTTTGGCTAGCCCTTTTTGTTGAGGGCACTCGCTTTACTCCAGCAAAG
CTTCTAGCAGCTCAGGAGTATGCTGTTTCACAGGGTTTGCCAGCACCCAGAAATGTATTG
ATTCCACGTACAAAGGGATTTGTATCAGCTGTAACTATTATGCGGGATTTTGTTCCAGCT
ATTTATGATACAACAGTAATTATTCCAAAAGATTCACCTCAACCAACAATGCTGCGGATT
TTGAAAGGGCAATCTTCAGTGGTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATG
CCAAAGTCAGAAGACGATGTTTCAAAATGGTGCAAAGACATCTTTGTAGCAAAGGATGCA
TTACTGGATAAGCATTTGGCGACAGGCACTTTTGATGAGGAGATTAGACCAATTGGCCGC
CCAGTAAAATCATTGCTGGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTC
AAGCTCTTCCTATGGACTCAACTCCTGTCGACATGGAAAGGAGTCGGGTTTACGGGCCTT
GGGCTCGCACTGGTGACGGCGGTCATGCATGTCTTCATCATGTTCTCGCAGTCAGAGCGA
TCGAGCTCAGCCAAGGCGGCTCGGAACCGTGTCAAGAAAGATTGA

Peptide Sequence

PEP ID

Os11t0637800-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:25199882:25206038:-1 gene:Os11g0637800 transcript:Os11t0637800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1. (Os11t0637800-01)
Sequence

MAVPLVLVVLPLGLLFLLSGLIINAIQAVLFLSIRPFSKSLYRRINRFLAELLWLQLVWL
VDWWAGVKIQLHADDETYKAMGNEHALVISNHRSDIDWLIGWILAQRSGCLGSTLAVMKK
SSKFLPVIGWSMWFAEYLFLERSWAKDEKTLKWGLQRLKDFPRPFWLALFVEGTRFTPAK
LLAAQEYAVSQGLPAPRNVLIPRTKGFVSAVTIMRDFVPAIYDTTVIIPKDSPQPTMLRI
LKGQSSVVHVRMKRHAMSEMPKSEDDVSKWCKDIFVAKDALLDKHLATGTFDEEIRPIGR
PVKSLLVTLFWSCLLLYGAVKLFLWTQLLSTWKGVGFTGLGLALVTAVMHVFIMFSQSER
SSSAKAARNRVKKD

Transcript Sequence

Transcript ID

Os11t0637800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:25199882:25206038:-1 gene:Os11g0637800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1. (Os11t0637800-01)
Sequence

CTGGTGAGGGGGAACCATGGGCGCACACGCTTCACTGCGTCTTTTTCCATCCAACCCCCT
ATAAAATCTCCAAATCCAACACCCCACCTCACCTCTTCCTCCTCGTCTCGTCTCTTCTCG
TCGCCGGTGGATTCGCCGCCGCCTCCGCCGCCGCCGCCGGAGGAGGAGGACGAGGAGAGG
GCGCTCCCTCGGGGGTGAGCATCCAGCCACCTCGGCCCGTTGCCTCCTCTTCGCATCTCG
GCCCCGCGAGATTGGAAGTGAGGGCAGGGCAGGGCGGCAGGGGCCATGGCGGTCCCACTC
GTGCTCGTCGTGCTCCCGCTCGGCCTCCTCTTCCTCCTCTCCGGCCTCATCATCAACGCC
ATCCAGGCCGTCCTGTTTCTCTCGATAAGGCCGTTCTCGAAGAGCTTGTACCGGCGGATC
AACAGGTTCTTGGCCGAGCTGCTGTGGCTTCAGCTGGTCTGGCTTGTGGATTGGTGGGCA
GGAGTTAAGATACAACTGCATGCTGATGACGAAACTTACAAGGCAATGGGGAATGAGCAT
GCACTTGTCATATCAAATCATCGGAGCGATATCGATTGGCTTATTGGGTGGATTTTGGCA
CAGCGCTCAGGATGCCTTGGAAGTACACTTGCTGTTATGAAGAAATCATCGAAATTCCTT
CCAGTTATTGGCTGGTCCATGTGGTTTGCAGAATACCTCTTTTTGGAAAGGAGCTGGGCA
AAGGATGAAAAGACATTGAAATGGGGCCTCCAAAGGTTGAAGGACTTCCCCAGACCATTT
TGGCTAGCCCTTTTTGTTGAGGGCACTCGCTTTACTCCAGCAAAGCTTCTAGCAGCTCAG
GAGTATGCTGTTTCACAGGGTTTGCCAGCACCCAGAAATGTATTGATTCCACGTACAAAG
GGATTTGTATCAGCTGTAACTATTATGCGGGATTTTGTTCCAGCTATTTATGATACAACA
GTAATTATTCCAAAAGATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCT
TCAGTGGTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAAGAC
GATGTTTCAAAATGGTGCAAAGACATCTTTGTAGCAAAGGATGCATTACTGGATAAGCAT
TTGGCGACAGGCACTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTG
CTGGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCCTATGG
ACTCAACTCCTGTCGACATGGAAAGGAGTCGGGTTTACGGGCCTTGGGCTCGCACTGGTG
ACGGCGGTCATGCATGTCTTCATCATGTTCTCGCAGTCAGAGCGATCGAGCTCAGCCAAG
GCGGCTCGGAACCGTGTCAAGAAAGATTGAAAGAGATGAAGATAGAGTCTGCAGCTTATC
AATGGGAGCTACCAATTAATTGGGTATTGAATTCATGTAGGCAACAAAATTGAGGGCCTA
ATCTTTCCTGTATAATGCACCAAAAGGGTTCTTACAGAACTGAATGCCTGAATAGAGAGA
TTCTAGGAGATTTGGTGAACTAGCAACTCTGAGCTCTGTTGTGCTGTATTTTCAGAGAAT
GTTTTTTTTTGGCAGAACAGGAATTGTACTACTTGTATTTATTGGAACTTCTACATCAGT
CTGGATTTGTTCAG