Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0637600-00
CDS Infomation

cds chromosome:IRGSP-1.0:11:25182326:25183324:-1 gene:Os11g0637600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to potyvirus VPg interacting protein. (Os11t0637600-00)
Sequence

TTTATCACCATCGATGACGCCTCTAATTTGCATCTCATTTTTCATTCTCAGATCCCTGAA
GATTTGACCGTCTGGGATGTTGTCAAAGGCGACGTCGCCATTGTTGCCAGCAAAATGAAA
TCCATGACAGAGCGGCTGCTGGAAGAACTCAAGATCGCGCTCCGGTTGCTCATGGAGGAC
ATCGATGATCAGAGCCATGTAGAGCAACTCGTTCGTCTTCAGAAGCATGTCGAAATCAGG
CCTGACCTGACATCGGCAACGCTTCTGACGGCTCACCATGTGCAGTTGGAGATGTTTGTT
GCCCTCAAGATGGGGATCCCGGCATATCTGCACGAAAATGTCAGCGTGCCACGGAGCCGT
CTCGCGGAGATCTTCGCCTACGAGAGATGCAAGAACATCTCCTGCCAGAGTGTTCTCCCA
GCTGAGGAGTGCGACTGCGATGTCTGCTGCTGCAGGAGAGGCTTCTGCAACCTCTGCATG
TGTGTGGTCTGCAACGGGTTCGATTTCGATGTCAACACATGCCGCTGGATTGGGTGTGAC
GGCTGCTCTCACTGGACCCACGCTGGCTGCGCAATTCGTGAGGAGCAGATCAAGACTGTG
ATTACGGTTGAAGATGGAGTTGCCCACTATGTGACAGTGTTCTTCTGCAAGGCCTGCCAT
GGGACATCTGAGCTGCTGGGGTGGGTCAGGAATGTGTTCCAGCATTGTGCCAAGATCTGG
GGCACGGATGCGTTGGCGCGAGAGCTCGAGTATGTTCAGGAGGTGTTCAGTGTTAGCGAG
GATTCGAAAGGGAAGAAATTGTTCGAGAAATGTACTGATCTGATCGAAAGACTGAAGGTT
GTTCAAGCTGAATCGATGGGTCCTGAAGTTCTGCTTCAGGCGCTCCAAGGTATGTGTACT
AATTTTTGTCTTCTCATCTTATTATTATGCTGA

Peptide Sequence

PEP ID

Os11t0637600-00
PEP Infomation

pep chromosome:IRGSP-1.0:11:25182326:25183324:-1 gene:Os11g0637600 transcript:Os11t0637600-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to potyvirus VPg interacting protein. (Os11t0637600-00)
Sequence

FITIDDASNLHLIFHSQIPEDLTVWDVVKGDVAIVASKMKSMTERLLEELKIALRLLMED
IDDQSHVEQLVRLQKHVEIRPDLTSATLLTAHHVQLEMFVALKMGIPAYLHENVSVPRSR
LAEIFAYERCKNISCQSVLPAEECDCDVCCCRRGFCNLCMCVVCNGFDFDVNTCRWIGCD
GCSHWTHAGCAIREEQIKTVITVEDGVAHYVTVFFCKACHGTSELLGWVRNVFQHCAKIW
GTDALARELEYVQEVFSVSEDSKGKKLFEKCTDLIERLKVVQAESMGPEVLLQALQGMCT
NFCLLILLLC

Transcript Sequence

Transcript ID

Os11t0637600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:25182326:25183324:-1 gene:Os11g0637600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to potyvirus VPg interacting protein. (Os11t0637600-00)
Sequence

TGTCAGTTCCAGATCACAGACATTGCCTCTTCTCTAGCAATTGCTATGAAAATAGATGAT
GAGTAGTTTATCACCATCGATGACGCCTCTAATTTGCATCTCATTTTTCATTCTCAGATC
CCTGAAGATTTGACCGTCTGGGATGTTGTCAAAGGCGACGTCGCCATTGTTGCCAGCAAA
ATGAAATCCATGACAGAGCGGCTGCTGGAAGAACTCAAGATCGCGCTCCGGTTGCTCATG
GAGGACATCGATGATCAGAGCCATGTAGAGCAACTCGTTCGTCTTCAGAAGCATGTCGAA
ATCAGGCCTGACCTGACATCGGCAACGCTTCTGACGGCTCACCATGTGCAGTTGGAGATG
TTTGTTGCCCTCAAGATGGGGATCCCGGCATATCTGCACGAAAATGTCAGCGTGCCACGG
AGCCGTCTCGCGGAGATCTTCGCCTACGAGAGATGCAAGAACATCTCCTGCCAGAGTGTT
CTCCCAGCTGAGGAGTGCGACTGCGATGTCTGCTGCTGCAGGAGAGGCTTCTGCAACCTC
TGCATGTGTGTGGTCTGCAACGGGTTCGATTTCGATGTCAACACATGCCGCTGGATTGGG
TGTGACGGCTGCTCTCACTGGACCCACGCTGGCTGCGCAATTCGTGAGGAGCAGATCAAG
ACTGTGATTACGGTTGAAGATGGAGTTGCCCACTATGTGACAGTGTTCTTCTGCAAGGCC
TGCCATGGGACATCTGAGCTGCTGGGGTGGGTCAGGAATGTGTTCCAGCATTGTGCCAAG
ATCTGGGGCACGGATGCGTTGGCGCGAGAGCTCGAGTATGTTCAGGAGGTGTTCAGTGTT
AGCGAGGATTCGAAAGGGAAGAAATTGTTCGAGAAATGTACTGATCTGATCGAAAGACTG
AAGGTTGTTCAAGCTGAATCGATGGGTCCTGAAGTTCTGCTTCAGGCGCTCCAAGGTATG
TGTACTAATTTTTGTCTTCTCATCTTATTATTATGCTGA