Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0636900-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:25148742:25153451:-1 gene:Os11g0636900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:U2AF65A description:Similar to Splicing factor U2af large subunit A. (Os11t0636900-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os11t0636900-02)
Sequence	ATGGCGGAGCACGAGGAGCAGCCCTACGAGGGCAACGGGAACGGCGGCGACCCGGCCCCC GCCTCCGCGTACGCTGAGTACCCTGCGCCCGAGGGGTCCCCGCCCGCCGCCGCCGCCAAG CCCACCGGCTTCTCCGATGGCGCCACCGACGGCGGCCGTTCTCAGCACGAGACACAGCCA CATGATGGCAGGTCCTCAAAGTCTAGAGAGAGGGAAAGAGAACGGGACAAGGACAAGGAA CGCGACAGAGACCGTGATAGAGACCGAAGGGACCGCGACCGTGGTGACAAGGACAGGGAC CGTGATCGCCACAGGGAGCACCGCGATAGAAGCGAAAGAAGGGAACACCACGATCGTGAA CGTTCTGATGACCGTGATCGACGCCGGGGCCATGATTCTGAAAGGAGAAGAGACCGTGAC AGAGATGGTCACCGCAGGCATCGATCTCGCTCCCGCTCCCCTTCAAAGGGTCGTGATCGC AGATCTAGATCTCGCTCACGCTCTCGATCTAGCAAGCGCGTGAGTGGATTTGACCAGGGA CCACAAGCAGCCATTCCTGCGCTTGCTGCTGGAGCAGCCCCAGGTCAGGTACCTGTTGTG GCCCCTGCTATTTCTGGGATGCTTCCGAACATGTTCAATTTGACTCAAACCCCGTTCACT CCGCTTGTTATTCAGCCACAAGCTATGACACAACAGGCTACTCGACATGCTAGGCGTGTT TATGTTGGTGGACTTCCTCCAACTGCTAATGAGCATACTGTTGCTGTATACTTCAATCAA GTTATGGCTGCTGTTGGTGGAAATACAGCTGGTCCAGGTGATGCTGTTCTTAATGTCTAC ATAAACCATGATAAGAAATTTGCATTTGTGGAGATGAGGTCTGTGGAGGAAGCAAGCAAT GCAATGGCCTTGGATGGTATAATGTTTGAGGGAGCACCTGTGAAGGTTAGAAGGCCAACA GACTATAATCCTTCCCTAGCAGCTGCATTGGGTCCAAGCCAGCCAAACCCCAACCTCAAT CTTGCTGCTGTTGGCTTAACACCTGGCTCAGCTGGAGGTTTAGAAGGTCCTGACCGCATT TTTGTGGGTGGGCTGCCCTATTACTTCACAGAAGCTCAAGTCAGGGAGTTGCTCGAATCC TTTGGACCTCTGCGTGGTTTTGATCTTGTGAAGGACAGAGAAACTGGAAACTCGAAGGGC TATGCTTTCTGTGTATACCAGGATCTTAATGTCACGGACATTGCCTGTGCTGCTCTTAAT GGTATCAAGATGGGAGACAAGACCCTCACTGTTAGGCGAGCTAACCAAGGAGCTTCTCAA CCTAGGCCAGAGCAAGAAAGCATGCTCCTGCATGTACAACAACAGGCGCAAATGCAGAAA CTCATGTTCCAAGTTGGAGGGGGAGCACTGCCTACAAAGGTGGTATGCCTGACCCAAGTG GTTTCACCAGATGAACTGAGGGATGATGAGGAGTATGAGGACATCGTGCAAGACATGAGG GAAGAAGGGTGCAGATACGTCCCACATAGTGCCATTGCAGAGTCTTTTATAGTCCGACCT TATGCAATATTGGCAGTCGGGCATAGCCTACAGAAGACACACAATTCCAATTTTACTTTG CTTTATCAGCTTTATGATTATGATATAATATGA

Peptide Sequence

PEP ID	Os11t0636900-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:25148742:25153451:-1 gene:Os11g0636900 transcript:Os11t0636900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:U2AF65A description:Similar to Splicing factor U2af large subunit A. (Os11t0636900-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os11t0636900-02)
Sequence	MAEHEEQPYEGNGNGGDPAPASAYAEYPAPEGSPPAAAAKPTGFSDGATDGGRSQHETQP HDGRSSKSRERERERDKDKERDRDRDRDRRDRDRGDKDRDRDRHREHRDRSERREHHDRE RSDDRDRRRGHDSERRRDRDRDGHRRHRSRSRSPSKGRDRRSRSRSRSRSSKRVSGFDQG PQAAIPALAAGAAPGQVPVVAPAISGMLPNMFNLTQTPFTPLVIQPQAMTQQATRHARRV YVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASN AMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRI FVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALN GIKMGDKTLTVRRANQGASQPRPEQESMLLHVQQQAQMQKLMFQVGGGALPTKVVCLTQV VSPDELRDDEEYEDIVQDMREEGCRYVPHSAIAESFIVRPYAILAVGHSLQKTHNSNFTL LYQLYDYDII

Transcript Sequence

Transcript ID	Os11t0636900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:25148742:25153451:-1 gene:Os11g0636900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:U2AF65A description:Similar to Splicing factor U2af large subunit A. (Os11t0636900-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os11t0636900-02)
Sequence	ACCTCGCGCCCGCCGCCTCCACCGCTCGAGCCACCGAACCCTAGAAATCCCGCCGCCGCC GCCCGCCCACTCCGTCGCGCCGATGGCGGAGCACGAGGAGCAGCCCTACGAGGGCAACGG GAACGGCGGCGACCCGGCCCCCGCCTCCGCGTACGCTGAGTACCCTGCGCCCGAGGGGTC CCCGCCCGCCGCCGCCGCCAAGCCCACCGGCTTCTCCGATGGCGCCACCGACGGCGGCCG TTCTCAGCACGAGACACAGCCACATGATGGCAGGTCCTCAAAGTCTAGAGAGAGGGAAAG AGAACGGGACAAGGACAAGGAACGCGACAGAGACCGTGATAGAGACCGAAGGGACCGCGA CCGTGGTGACAAGGACAGGGACCGTGATCGCCACAGGGAGCACCGCGATAGAAGCGAAAG AAGGGAACACCACGATCGTGAACGTTCTGATGACCGTGATCGACGCCGGGGCCATGATTC TGAAAGGAGAAGAGACCGTGACAGAGATGGTCACCGCAGGCATCGATCTCGCTCCCGCTC CCCTTCAAAGGGTCGTGATCGCAGATCTAGATCTCGCTCACGCTCTCGATCTAGCAAGCG CGTGAGTGGATTTGACCAGGGACCACAAGCAGCCATTCCTGCGCTTGCTGCTGGAGCAGC CCCAGGTCAGGTACCTGTTGTGGCCCCTGCTATTTCTGGGATGCTTCCGAACATGTTCAA TTTGACTCAAACCCCGTTCACTCCGCTTGTTATTCAGCCACAAGCTATGACACAACAGGC TACTCGACATGCTAGGCGTGTTTATGTTGGTGGACTTCCTCCAACTGCTAATGAGCATAC TGTTGCTGTATACTTCAATCAAGTTATGGCTGCTGTTGGTGGAAATACAGCTGGTCCAGG TGATGCTGTTCTTAATGTCTACATAAACCATGATAAGAAATTTGCATTTGTGGAGATGAG GTCTGTGGAGGAAGCAAGCAATGCAATGGCCTTGGATGGTATAATGTTTGAGGGAGCACC TGTGAAGGTTAGAAGGCCAACAGACTATAATCCTTCCCTAGCAGCTGCATTGGGTCCAAG CCAGCCAAACCCCAACCTCAATCTTGCTGCTGTTGGCTTAACACCTGGCTCAGCTGGAGG TTTAGAAGGTCCTGACCGCATTTTTGTGGGTGGGCTGCCCTATTACTTCACAGAAGCTCA AGTCAGGGAGTTGCTCGAATCCTTTGGACCTCTGCGTGGTTTTGATCTTGTGAAGGACAG AGAAACTGGAAACTCGAAGGGCTATGCTTTCTGTGTATACCAGGATCTTAATGTCACGGA CATTGCCTGTGCTGCTCTTAATGGTATCAAGATGGGAGACAAGACCCTCACTGTTAGGCG AGCTAACCAAGGAGCTTCTCAACCTAGGCCAGAGCAAGAAAGCATGCTCCTGCATGTACA ACAACAGGCGCAAATGCAGAAACTCATGTTCCAAGTTGGAGGGGGAGCACTGCCTACAAA GGTGGTATGCCTGACCCAAGTGGTTTCACCAGATGAACTGAGGGATGATGAGGAGTATGA GGACATCGTGCAAGACATGAGGGAAGAAGGGTGCAGATACGTCCCACATAGTGCCATTGC AGAGTCTTTTATAGTCCGACCTTATGCAATATTGGCAGTCGGGCATAGCCTACAGAAGAC ACACAATTCCAATTTTACTTTGCTTTATCAGCTTTATGATTATGATATAATATGATGCCA TGCTTTTTTCTATTTGTCTATGTTCTCACTGACGCTTGTTCAGGTAACCTGGTGAAAGTT GTGATCCCGCGACCTGATCCCAGCGGTGCTCCTGTTGCTGGAGTTGGGAGGGTGTTTTTG GAATTTGCAGATGTAGAGAGCTCGACCAAGGCGAAGAATGGGATGCACGGGAGGAAGTTT GCCAACAACCAGGTGGTGGCTGTCTTCTACCCTGAGGACAAGTTCGCTGAAGGGCAATAC GACGGTTGAACATCGAAGTCGCCCTCTTATTGTTTCTAACGCCTATAAGGCGGAATCTAT TTACGTTTACCTTAGTTTTGCAATTTTTACATCTAGTTTTTTTTTTCTGTGTTAGTTGAA ATTTTATTAGTAGTCCAGAGATTGGTGCAGAATCATGTGTACTTTGGGTATGTTCTTATG GTTCTGACTTGAAAAGC