Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0621300-00
CDS Infomation	cds chromosome:IRGSP-1.0:11:24219144:24224045:-1 gene:Os11g0621300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1399 family protein. (Os11t0621300-00)
Sequence	ATGGACGGGGAGCAAGAGGCGCGGTGGCTGGCGGCGCAGGGGGTCGCCGTAGGTGCCGAC ATGGTCGCGGCGGCGCTCCGGCAGCTGGAGTTCCTCGCGGCGGTGGACCGCCGCCGGTGG CTCTACGAGGGGCCGCTGCTCGAGAGGGCCATCCACAGGTACAAATCATGCTGGCTTCCT CTCCTTTCCAAGCACACTCAGGCTGCTGTTGTAGATGGGCCTTTAGTTGTTCCTCTTGAT TGCGAATGGATATGGCACTGCCATCGGCTTAACCCGGTACAATACTTAAAGGACTGCAAG AGATTGTATGGCAGAATACTCGACAATAGCAATGTTCAGTCTTCGATTAGAGCAGAATCC AAGCACCAGTCTGAGAAGGTTTGGGCTGAGCAATATCCTAAGGAGCCCTTTGAGCTGGAG TACACAAGCTCTTCTGACAACTCAATTTATGCAAATGCTGGAGCTGCAGAGGACATTTCT TATGATTTGGTCGCAGCTGTTAAGAGACAGTCTTCTTTCTTCTACCAGGTTGACACACCA ACTATGCATGATCAGCGATTTCTGGAAGAAGCTTTAGCTCGGTACAAAGGATTCTTGTAC CTGATCAAGACGAATCAGGAGAACAAAATGAAGCTCTTTCGCGTGCCAACCTATGATGTG GATGTCATCTGGCACACTCACCAACTGCATCCTGCTACCTACTGCCATGATATGCTGAAG CTCATTGGACGAGTTCTGGAGCATGATGACACCGATGACGATCGATCAGAAGGAAAGAAG CTCGATACTGGATTTTCAGGGACTACCAAACAGTTTGAGAATGCCTTTGGTGCAAGATAC TGGAAGGCTGGTGCTATGTACCGTGGCAACTTGCCGTCTCCTGTGACATCCAATCCTCAG ATGTTTATTAGTGAGGTGGATGGTGAATTTAGTGTTGGCAAAGCTGAGTCGCAAATTACC ATTCTTGAAACAACAGTTATAGAGTTATTCTTGCAAATTGTGGACATCAAGAACTTGCCA CCTGCAATTCCAAAGGAAAATGTGTACATATGGTTCACAAAGAATCAACCAGACATGTTC ATCAGTGATGGTGGCAGGCTGGATATCTCTACAAAAACAGGGAAGTCGATTGGAGCCAGT ATCCAATGTGAGCCTACTGGTGAACTCATTCTAACAGTACTGGTTGATCGGGAATCATCA TCGAAGAAACCCAAAAAGATTGGGAAGATTTCTATCCCTCTTCAAGAGTTTACATGGTCT GATTCCAAGCTCTCCTTTGAGAGGTGGTTTGAATTGAAACCTCATGATGGGCATGCCAGT TCACCTATCGTCAGCCTTCGAGTTGCTGCCTCTTCCACTGTCCCAGTGAAGGCTCAGCAG GTTCTTAGCATGATCAGGACAGAACCTTTCTCTCTTAAGAGTTTTCTGTCACCGAATTCC ATCAAGGATCAAAAGATGAGCTGCTGGACTCACTTTGTGTATGATTGCAATACTGAACTT ATCCGTCTTCAAATTAGGGATCAGAAGGCAAAGAACGGCATGGTTGTCGCTCGGGAGTTG GTCGGAGTAACAAAGTCATCAAAGAAACCATTTAAGCTAGCAGAGTTCGTGGACAACAAG TGGTCACTGAGCAACTCTAACTTATGCATCACTAATGACATGAAACCAAGCAAGGATGGC TCTATACTTGAGCTCAAATGTGACAACAAAACGATCAAACTCTACCAGGGAAAGAGGCTA GAATTTCAACGGAAGTGCTGCAACAATCACGCAGAGGAGAATGCTTCAGCTATTACTGCT GTGAAGTTCTCTGCTGAACATCCATATGGCAAAGCAGTTGCATTGCTTGACACCAAATCT GAGCTGATAATGGTAAATGAGGATTGGTTTCTGCTTCCTTGGATCGTGATGTCGTTCCTG TTCCAAGACATCAATGTCGAAGACGGCTCGAAGCTCATCGGTGGCGCCATTGCTCAGAAA GGCGCGATCTCTGAGCCCGACACTGCTGCCATGGCGATGTCAGCCGAGACGGTGGCTGCT CCTGCTAACTGCGGCACTTGCGGCACGGCGTGCGACAGTAACATGGCAGGCGACAAGGTG GTGGCCGCCGCGAGATGCAAGGCCGCGCGATGCAAGGCTGTCGCGGCAAGCGGCGGCGGC GGCGGCCAGGCAGAGTCGGCTGGGTGCGGCTCGGGATGCGGCGGCGGCTGTGGCGGCGGT GTTGCCAAGGTCGTTGAGGCCACCAAGGCTGGCGTCGGCGGCCATGGCAAGTCCGGTGGA TGTGGCTCGGGCTGCGGTGGTGGCTGTGGCGGCGGCGGGTGCGGCGCCATGGCCGTCGAG AGCTCCAAGGATGATGTCCATGCGAAGTGTGCAGGTTGTGGCTCAGGCTGCGGCGGCGGC TGTGGCGGCGGCTGTGGCGGTGGCATGGTCATGGAAGCCTCCAAGGCTGGCCATGTCAAG TCCGGCGGGTGCGGCTCAGGCTGCGGCGGCGGCTGTGGTGGAGGCTGCGGTGGCGGCGTG GCCATGGAAAGCTCCAAGGCTGGCCATGTCAAGTCCGGCGGATGCGGCTCAGGCTGCGGC GGCGGCTGTGGTGGCGGTTGTGGCGGCGGCATGGTCATGGAAAGCTCCAAGGCTGTCCAT GTCAAGTCCGGCGGCTGCGGCGGAGGCTGTGGTGGCGGCGTGGCCATGGAAAGCTCCACC GTTGGACATGCCAAGTCCGGTGGCTGCGGTTCAGGCTGTGGCGGCGGCTGCGGTGGCGGC GGTTGCGGCGCGATGCTCAACGCGAGCACCTGA

Peptide Sequence

PEP ID	Os11t0621300-00
PEP Infomation	pep chromosome:IRGSP-1.0:11:24219144:24224045:-1 gene:Os11g0621300 transcript:Os11t0621300-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1399 family protein. (Os11t0621300-00)
Sequence	MDGEQEARWLAAQGVAVGADMVAAALRQLEFLAAVDRRRWLYEGPLLERAIHRYKSCWLP LLSKHTQAAVVDGPLVVPLDCEWIWHCHRLNPVQYLKDCKRLYGRILDNSNVQSSIRAES KHQSEKVWAEQYPKEPFELEYTSSSDNSIYANAGAAEDISYDLVAAVKRQSSFFYQVDTP TMHDQRFLEEALARYKGFLYLIKTNQENKMKLFRVPTYDVDVIWHTHQLHPATYCHDMLK LIGRVLEHDDTDDDRSEGKKLDTGFSGTTKQFENAFGARYWKAGAMYRGNLPSPVTSNPQ MFISEVDGEFSVGKAESQITILETTVIELFLQIVDIKNLPPAIPKENVYIWFTKNQPDMF ISDGGRLDISTKTGKSIGASIQCEPTGELILTVLVDRESSSKKPKKIGKISIPLQEFTWS DSKLSFERWFELKPHDGHASSPIVSLRVAASSTVPVKAQQVLSMIRTEPFSLKSFLSPNS IKDQKMSCWTHFVYDCNTELIRLQIRDQKAKNGMVVARELVGVTKSSKKPFKLAEFVDNK WSLSNSNLCITNDMKPSKDGSILELKCDNKTIKLYQGKRLEFQRKCCNNHAEENASAITA VKFSAEHPYGKAVALLDTKSELIMVNEDWFLLPWIVMSFLFQDINVEDGSKLIGGAIAQK GAISEPDTAAMAMSAETVAAPANCGTCGTACDSNMAGDKVVAAARCKAARCKAVAASGGG GGQAESAGCGSGCGGGCGGGVAKVVEATKAGVGGHGKSGGCGSGCGGGCGGGGCGAMAVE SSKDDVHAKCAGCGSGCGGGCGGGCGGGMVMEASKAGHVKSGGCGSGCGGGCGGGCGGGV AMESSKAGHVKSGGCGSGCGGGCGGGCGGGMVMESSKAVHVKSGGCGGGCGGGVAMESST VGHAKSGGCGSGCGGGCGGGGCGAMLNAST

Transcript Sequence

Transcript ID	Os11t0621300-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:24219144:24224045:-1 gene:Os11g0621300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1399 family protein. (Os11t0621300-00)
Sequence	GGAGAAGGAGGAGGAGATGGACGGGGAGCAAGAGGCGCGGTGGCTGGCGGCGCAGGGGGT CGCCGTAGGTGCCGACATGGTCGCGGCGGCGCTCCGGCAGCTGGAGTTCCTCGCGGCGGT GGACCGCCGCCGGTGGCTCTACGAGGGGCCGCTGCTCGAGAGGGCCATCCACAGGTACAA ATCATGCTGGCTTCCTCTCCTTTCCAAGCACACTCAGGCTGCTGTTGTAGATGGGCCTTT AGTTGTTCCTCTTGATTGCGAATGGATATGGCACTGCCATCGGCTTAACCCGGTACAATA CTTAAAGGACTGCAAGAGATTGTATGGCAGAATACTCGACAATAGCAATGTTCAGTCTTC GATTAGAGCAGAATCCAAGCACCAGTCTGAGAAGGTTTGGGCTGAGCAATATCCTAAGGA GCCCTTTGAGCTGGAGTACACAAGCTCTTCTGACAACTCAATTTATGCAAATGCTGGAGC TGCAGAGGACATTTCTTATGATTTGGTCGCAGCTGTTAAGAGACAGTCTTCTTTCTTCTA CCAGGTTGACACACCAACTATGCATGATCAGCGATTTCTGGAAGAAGCTTTAGCTCGGTA CAAAGGATTCTTGTACCTGATCAAGACGAATCAGGAGAACAAAATGAAGCTCTTTCGCGT GCCAACCTATGATGTGGATGTCATCTGGCACACTCACCAACTGCATCCTGCTACCTACTG CCATGATATGCTGAAGCTCATTGGACGAGTTCTGGAGCATGATGACACCGATGACGATCG ATCAGAAGGAAAGAAGCTCGATACTGGATTTTCAGGGACTACCAAACAGTTTGAGAATGC CTTTGGTGCAAGATACTGGAAGGCTGGTGCTATGTACCGTGGCAACTTGCCGTCTCCTGT GACATCCAATCCTCAGATGTTTATTAGTGAGGTGGATGGTGAATTTAGTGTTGGCAAAGC TGAGTCGCAAATTACCATTCTTGAAACAACAGTTATAGAGTTATTCTTGCAAATTGTGGA CATCAAGAACTTGCCACCTGCAATTCCAAAGGAAAATGTGTACATATGGTTCACAAAGAA TCAACCAGACATGTTCATCAGTGATGGTGGCAGGCTGGATATCTCTACAAAAACAGGGAA GTCGATTGGAGCCAGTATCCAATGTGAGCCTACTGGTGAACTCATTCTAACAGTACTGGT TGATCGGGAATCATCATCGAAGAAACCCAAAAAGATTGGGAAGATTTCTATCCCTCTTCA AGAGTTTACATGGTCTGATTCCAAGCTCTCCTTTGAGAGGTGGTTTGAATTGAAACCTCA TGATGGGCATGCCAGTTCACCTATCGTCAGCCTTCGAGTTGCTGCCTCTTCCACTGTCCC AGTGAAGGCTCAGCAGGTTCTTAGCATGATCAGGACAGAACCTTTCTCTCTTAAGAGTTT TCTGTCACCGAATTCCATCAAGGATCAAAAGATGAGCTGCTGGACTCACTTTGTGTATGA TTGCAATACTGAACTTATCCGTCTTCAAATTAGGGATCAGAAGGCAAAGAACGGCATGGT TGTCGCTCGGGAGTTGGTCGGAGTAACAAAGTCATCAAAGAAACCATTTAAGCTAGCAGA GTTCGTGGACAACAAGTGGTCACTGAGCAACTCTAACTTATGCATCACTAATGACATGAA ACCAAGCAAGGATGGCTCTATACTTGAGCTCAAATGTGACAACAAAACGATCAAACTCTA CCAGGGAAAGAGGCTAGAATTTCAACGGAAGTGCTGCAACAATCACGCAGAGGAGAATGC TTCAGCTATTACTGCTGTGAAGTTCTCTGCTGAACATCCATATGGCAAAGCAGTTGCATT GCTTGACACCAAATCTGAGCTGATAATGGTAAATGAGGATTGGTTTCTGCTTCCTTGGAT CGTGATGTCGTTCCTGTTCCAAGACATCAATGTCGAAGACGGCTCGAAGCTCATCGGTGG CGCCATTGCTCAGAAAGGCGCGATCTCTGAGCCCGACACTGCTGCCATGGCGATGTCAGC CGAGACGGTGGCTGCTCCTGCTAACTGCGGCACTTGCGGCACGGCGTGCGACAGTAACAT GGCAGGCGACAAGGTGGTGGCCGCCGCGAGATGCAAGGCCGCGCGATGCAAGGCTGTCGC GGCAAGCGGCGGCGGCGGCGGCCAGGCAGAGTCGGCTGGGTGCGGCTCGGGATGCGGCGG CGGCTGTGGCGGCGGTGTTGCCAAGGTCGTTGAGGCCACCAAGGCTGGCGTCGGCGGCCA TGGCAAGTCCGGTGGATGTGGCTCGGGCTGCGGTGGTGGCTGTGGCGGCGGCGGGTGCGG CGCCATGGCCGTCGAGAGCTCCAAGGATGATGTCCATGCGAAGTGTGCAGGTTGTGGCTC AGGCTGCGGCGGCGGCTGTGGCGGCGGCTGTGGCGGTGGCATGGTCATGGAAGCCTCCAA GGCTGGCCATGTCAAGTCCGGCGGGTGCGGCTCAGGCTGCGGCGGCGGCTGTGGTGGAGG CTGCGGTGGCGGCGTGGCCATGGAAAGCTCCAAGGCTGGCCATGTCAAGTCCGGCGGATG CGGCTCAGGCTGCGGCGGCGGCTGTGGTGGCGGTTGTGGCGGCGGCATGGTCATGGAAAG CTCCAAGGCTGTCCATGTCAAGTCCGGCGGCTGCGGCGGAGGCTGTGGTGGCGGCGTGGC CATGGAAAGCTCCACCGTTGGACATGCCAAGTCCGGTGGCTGCGGTTCAGGCTGTGGCGG CGGCTGCGGTGGCGGCGGTTGCGGCGCGATGCTCAACGCGAGCACCTGA