Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0620100-03
CDS Infomation

cds chromosome:IRGSP-1.0:11:24170746:24172973:-1 gene:Os11g0620100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oligouridylate binding protein. (Os11t0620100-01);Hypothetical conserved gene. (Os11t0620100-03)
Sequence

TTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCA
GGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGCTTTGTTT
GCTTTTTTCGCTGGATTTACCAGTTGCTCAGATGCTAGGGTAATGTGGGATCAGAAAACT
GGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGGACGCACAAAATGCC
ATAAATGAACTGAATGGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACA
AAGGGTGCTAATGCTGGTGAAGAGAAACAAAATACAGACTCCAAGGGTATGATAGAGTTG
ACAAATGGTTCATCAGAAGGTGGAAAGGATAATGCAAATGAAGATGGTCCTGAAAACAAC
CCACAGTACACGACTGTTTATGTTGGCAATCTTCCTCATGATGTCAACAGCAATGATGTG
CACAGATTTTTCCATTCACTTGGGGTTGGTTCAATTGAGGAGGTGCGTGTAACGCGTGAT
AAAGGTTTTGGCTTTGTGCGTTACAGCACCCATGAAGAAGCTGCTCTAGCAATTCAGACT
GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGTGTTCCTGGGGAAGCAAGCCAACT
CCACCAGGGACAGCATCCGCGCCCCTACCCCCTCCAGCACCAGCACCATTCAATCCTGGC
ATGTCGGCGACCGACCTCCTAGCCTACGAGCGCACCCTGGCGCTGAGCAAGATGGCAGCG
AACCCGGCCCTGATGAGTCAGCACGCCGCCCTAAAGCAGGCTGCCGCCATGGGGATGGGC
GCCGGAGCCAGCCAGGCCATCTACGACGGCGGCTACCAGAGTGCCAACGCCGTCTTCTAC
TAG

Peptide Sequence

PEP ID

Os11t0620100-03
PEP Infomation

pep chromosome:IRGSP-1.0:11:24170746:24172973:-1 gene:Os11g0620100 transcript:Os11t0620100-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oligouridylate binding protein. (Os11t0620100-01);Hypothetical conserved gene. (Os11t0620100-03)
Sequence

FGQPIKVNWAYASTQREDTSGHFNIFVGDLCPEVTDAALFAFFAGFTSCSDARVMWDQKT
GRSRGFGFVSFRNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMIEL
TNGSSEGGKDNANEDGPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRD
KGFGFVRYSTHEEAALAIQTGNGQLIGGRQIKCSWGSKPTPPGTASAPLPPPAPAPFNPG
MSATDLLAYERTLALSKMAANPALMSQHAALKQAAAMGMGAGASQAIYDGGYQSANAVFY

Transcript Sequence

Transcript ID

Os11t0620100-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:24170746:24172973:-1 gene:Os11g0620100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oligouridylate binding protein. (Os11t0620100-01);Hypothetical conserved gene. (Os11t0620100-03)
Sequence

TTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCA
GGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGCTTTGTTT
GCTTTTTTCGCTGGATTTACCAGTTGCTCAGATGCTAGGGTAATGTGGGATCAGAAAACT
GGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGGACGCACAAAATGCC
ATAAATGAACTGAATGGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACA
AAGGGTGCTAATGCTGGTGAAGAGAAACAAAATACAGACTCCAAGGGTATGATAGAGTTG
ACAAATGGTTCATCAGAAGGTGGAAAGGATAATGCAAATGAAGATGGTCCTGAAAACAAC
CCACAGTACACGACTGTTTATGTTGGCAATCTTCCTCATGATGTCAACAGCAATGATGTG
CACAGATTTTTCCATTCACTTGGGGTTGGTTCAATTGAGGAGGTGCGTGTAACGCGTGAT
AAAGGTTTTGGCTTTGTGCGTTACAGCACCCATGAAGAAGCTGCTCTAGCAATTCAGACT
GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGTGTTCCTGGGGAAGCAAGCCAACT
CCACCAGGGACAGCATCCGCGCCCCTACCCCCTCCAGCACCAGCACCATTCAATCCTGGC
ATGTCGGCGACCGACCTCCTAGCCTACGAGCGCACCCTGGCGCTGAGCAAGATGGCAGCG
AACCCGGCCCTGATGAGTCAGCACGCCGCCCTAAAGCAGGCTGCCGCCATGGGGATGGGC
GCCGGAGCCAGCCAGGCCATCTACGACGGCGGCTACCAGAGTGCCAACGCCGTCTTCTAC
TAGAGTGACCTGAGTACCTGACCCCCCATGAAGCAGACCACCACCATTGCCTGCCTGCCT
CTGTATGACCAAGGAGGATGATGATGACCCCTCCACCCCCTTATACATATAGTAGATGAA
GCCTTACCTGAACCTCTCCTTTTCTACCTTTGTTATTTGCCAATCTAGTAATCTTCTCTT
CGCTGGATGCTGGCTATATATATATATCTAGAACATATATATAATGTTTTTCTGCATTTT
TAGAGATATGGAAACGACCTTTGGTATTTGGATGGTTCCCTCTGTTACTATCATCGTATC
ATGTCGGTGTCATATTGTATTGCTCTATGCGCATTTTTTTTTTAATTTTACCTTGCTCTC
AATTAACGAT