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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0615200-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:23913819:23917177:-1 gene:Os11g0615200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GRF-interacting factor 1 description:SSXT family protein. (Os11t0615200-01)
Sequence

ATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGGCGGCC
GGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCC
ATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCTCAGCTT
CAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCCAACCACCTCAGAATCCAGGA
AGTCGCCCTCAGATGATGCAGCCTGGTGCTACCCCAGGTGCTGGGCATTACATGTCCCAA
GTACCGATGTTCCCTCCAAGAACTCCCTTAACCCCACAACAGATGCAAGAGCAGCAGCAG
CAGCAACTCCAGCAACAGCAAGCTCAGGCTCTAGCCTTCCCCGGCCAGATGCTAATGAGA
CCAGGTACTGTCAATGGCATGCAATCTATCCCAGTTGCTGACCCTGCTCGCGCAGCCGAT
CTTCAGACGGCAGCACCGGGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCAACCTCG
GAGCCTTCCGGGACCGAGAGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGAC
ATAGCGGAGAAGTCCTGA

Peptide Sequence

PEP ID

Os11t0615200-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:23913819:23917177:-1 gene:Os11g0615200 transcript:Os11t0615200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GRF-interacting factor 1 description:SSXT family protein. (Os11t0615200-01)
Sequence

MQQQMAMPAGAAAAAVPPAAGITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQL
QKNLLYLAAIADAQPPQNPGSRPQMMQPGATPGAGHYMSQVPMFPPRTPLTPQQMQEQQQ
QQLQQQQAQALAFPGQMLMRPGTVNGMQSIPVADPARAADLQTAAPGSVDGRGNKQDATS
EPSGTESHKSAGADNDAGGDIAEKS

Transcript Sequence

Transcript ID

Os11t0615200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:23913819:23917177:-1 gene:Os11g0615200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GRF-interacting factor 1 description:SSXT family protein. (Os11t0615200-01)
Sequence

GAAAAGCACAAAGCACCCACCAAATCCACCCTCGACCAAGAAACTGAGGCAAGAAGAAGA
AGAAGAAGAAGCCGCCGCGGCGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCC
GCCGCCGCGGTGCCGCCGGCGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGAT
GAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAA
TGTGCTCAGTACCAAGCTCAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGAT
GCCCAACCACCTCAGAATCCAGGAAGTCGCCCTCAGATGATGCAGCCTGGTGCTACCCCA
GGTGCTGGGCATTACATGTCCCAAGTACCGATGTTCCCTCCAAGAACTCCCTTAACCCCA
CAACAGATGCAAGAGCAGCAGCAGCAGCAACTCCAGCAACAGCAAGCTCAGGCTCTAGCC
TTCCCCGGCCAGATGCTAATGAGACCAGGTACTGTCAATGGCATGCAATCTATCCCAGTT
GCTGACCCTGCTCGCGCAGCCGATCTTCAGACGGCAGCACCGGGCTCGGTAGATGGCCGA
GGAAACAAGCAGGATGCAACCTCGGAGCCTTCCGGGACCGAGAGCCACAAGAGTGCGGGA
GCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGAGCTAGCACAAGTGTTAGG
ATGAATAATGCCATGTATACTAGCAATGAAAAAGAAAGAAAGCCCCCTGCCTCGTGGATC
ACAAGTAGTCCTTACTCATCACCCCCTGTGTTTTAGAAGGCTCGTCTTATCGGTGTTGTA
GAACAAAACTTTTAGATTGATGATGATGTAACCTATCAGAGATTCTTATCTCATCCTACA
ATTGTTGTAGCTATTATGGAATAATTTTACCAGCCTGAGAGAGTTTTTACTTC