Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0615100-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:23909878:23913296:1 gene:Os11g0615100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Pol I subunit RPA49, RNA polymerase II subunit RPA49 description:RNA polymerase I associated factor, A49-like domain containing protein. (Os11t0615100-01)
Sequence	ATGGCGGACCACCAGCCCGCCGCCTCCTCCCCCAAGAGGAAGAAGAAGCACTCCAAGAAG CCGGAGGACAGCAATGCCACCGTCGACGACTCCCTCGCCGCCGCCGCCTCCCCCTCCCCC AAGAAGAAGGAGAAGCACTCCAAGAAGAAGCGGGAAGCCATCGATGCCACCATGGCCGCT GCCTCCCCCAAGAAGAAGGAGAAGAAGCACTCCAAGAAGCAGGAAGACACCAATGTCCCC GAGAAGAAGCGGGAAGTCGTCCATGTCACCGTGGACGCCTCCCTCACCGGCGCCGCCGCC GCGGGCGCAGCCCCCGTCGTCGCCTACTTCCCGACCGGCTACGACCCCCTGGCCGCCGGC GGCGGCAGGAAGGGTAGAGAGGCCCCCCGCACGAGGCTGTTCCGCCACACGAAGCACCCA TCCCGCATCGAGCTCGTGGTCGGCGCCGCCACTGGTGGCGGCGGAGGGCCGGACTTCGTC GGGCGGAGCTACGCCGGCGAGGCCGTGCTGCCGCAGCTCACTGGCTACGCGCTCGGTGTC CTCGACAAGGCCTCCGGCACCCTCAAGGTCGTCCCCATCGCCGCCAACAAGAAACTGGCG CATTCGCAGCACTCTGGGGCAGTAGGGGAGGCAGTATCATCAGCAGGAGATGCTGACTTG AAGGTACAGGATATTACCAAGGCGTTTGGAACCCAGAAAGACAAGGCCAAGGATATTAAG TGGCAGTCATTAAATGAACAAAGGAATGATCCTTCTGCTTTTATGGACCTTGACCTTGGG AATGCTGATACCAGTGTGGGTGCTAATGAAAGTCAAGAACCAACTGTACGGAACATTCCA CCTTATGATCCTGCAGCAGATACATCAGAAAGGGCATATCTTTTTGATGAGATTATTCCA AAGAGTATAAGGCCGCACCTTGTGGATATTATAGGACATTTTGAGTCAGGAGAAATTTCT TCAAAAGGCTATGGGAGTTTTGTGTCAAATCGTGTTAATAAATTACAGGAGCTTCAGGGT GAAGATAAGGAGAGGCTTGCTTGGATACTGTCCTACATCACACATCTCCTATCCCTGCTG GCACGGAACAGCTCCATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCA GTGATCCCACAGTATGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTAGC GCCTTGTCAACAGAGAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTAC GCTGATGACTTCAGATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAG ATGATTAAACCATATTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAA TCCTCTGTAATGACACTTCCAGCTCCCCTCAAGTTCCCAAAAGAAGCTACAAGGAGAAAG CGACGAAGGTTCTGA

Peptide Sequence

PEP ID	Os11t0615100-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:23909878:23913296:1 gene:Os11g0615100 transcript:Os11t0615100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Pol I subunit RPA49, RNA polymerase II subunit RPA49 description:RNA polymerase I associated factor, A49-like domain containing protein. (Os11t0615100-01)
Sequence	MADHQPAASSPKRKKKHSKKPEDSNATVDDSLAAAASPSPKKKEKHSKKKREAIDATMAA ASPKKKEKKHSKKQEDTNVPEKKREVVHVTVDASLTGAAAAGAAPVVAYFPTGYDPLAAG GGRKGREAPRTRLFRHTKHPSRIELVVGAATGGGGGPDFVGRSYAGEAVLPQLTGYALGV LDKASGTLKVVPIAANKKLAHSQHSGAVGEAVSSAGDADLKVQDITKAFGTQKDKAKDIK WQSLNEQRNDPSAFMDLDLGNADTSVGANESQEPTVRNIPPYDPAADTSERAYLFDEIIP KSIRPHLVDIIGHFESGEISSKGYGSFVSNRVNKLQELQGEDKERLAWILSYITHLLSLL ARNSSMSKRHRKENQATSGPVIPQYVYRKMVLMFTEPGSSALSTEKHELLINYILVLTLY ADDFRSDPKDICEDLKMTRQMIKPYYDQLGCKSSSAGAFKSSVMTLPAPLKFPKEATRRK RRRF

Transcript Sequence

Transcript ID	Os11t0615100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:23909878:23913296:1 gene:Os11g0615100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Pol I subunit RPA49, RNA polymerase II subunit RPA49 description:RNA polymerase I associated factor, A49-like domain containing protein. (Os11t0615100-01)
Sequence	ACCTCAAGAACCCTAGACAATTGGCGACCTCGAAAAGCCCTAGAGCCGTCTCCAATGGCG GACCACCAGCCCGCCGCCTCCTCCCCCAAGAGGAAGAAGAAGCACTCCAAGAAGCCGGAG GACAGCAATGCCACCGTCGACGACTCCCTCGCCGCCGCCGCCTCCCCCTCCCCCAAGAAG AAGGAGAAGCACTCCAAGAAGAAGCGGGAAGCCATCGATGCCACCATGGCCGCTGCCTCC CCCAAGAAGAAGGAGAAGAAGCACTCCAAGAAGCAGGAAGACACCAATGTCCCCGAGAAG AAGCGGGAAGTCGTCCATGTCACCGTGGACGCCTCCCTCACCGGCGCCGCCGCCGCGGGC GCAGCCCCCGTCGTCGCCTACTTCCCGACCGGCTACGACCCCCTGGCCGCCGGCGGCGGC AGGAAGGGTAGAGAGGCCCCCCGCACGAGGCTGTTCCGCCACACGAAGCACCCATCCCGC ATCGAGCTCGTGGTCGGCGCCGCCACTGGTGGCGGCGGAGGGCCGGACTTCGTCGGGCGG AGCTACGCCGGCGAGGCCGTGCTGCCGCAGCTCACTGGCTACGCGCTCGGTGTCCTCGAC AAGGCCTCCGGCACCCTCAAGGTCGTCCCCATCGCCGCCAACAAGAAACTGGCGCATTCG CAGCACTCTGGGGCAGTAGGGGAGGCAGTATCATCAGCAGGAGATGCTGACTTGAAGGTA CAGGATATTACCAAGGCGTTTGGAACCCAGAAAGACAAGGCCAAGGATATTAAGTGGCAG TCATTAAATGAACAAAGGAATGATCCTTCTGCTTTTATGGACCTTGACCTTGGGAATGCT GATACCAGTGTGGGTGCTAATGAAAGTCAAGAACCAACTGTACGGAACATTCCACCTTAT GATCCTGCAGCAGATACATCAGAAAGGGCATATCTTTTTGATGAGATTATTCCAAAGAGT ATAAGGCCGCACCTTGTGGATATTATAGGACATTTTGAGTCAGGAGAAATTTCTTCAAAA GGCTATGGGAGTTTTGTGTCAAATCGTGTTAATAAATTACAGGAGCTTCAGGGTGAAGAT AAGGAGAGGCTTGCTTGGATACTGTCCTACATCACACATCTCCTATCCCTGCTGGCACGG AACAGCTCCATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATC CCACAGTATGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTAGCGCCTTG TCAACAGAGAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGAT GACTTCAGATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATT AAACCATATTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCT GTAATGACACTTCCAGCTCCCCTCAAGTTCCCAAAAGAAGCTACAAGGAGAAAGCGACGA AGGTTCTGATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAA GATTGTTCGAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAA ACATGTGGAATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTC ACAAAGGCAGAATATTGTTTATGTATTGATGACATTTTTTAACCCTTTTTTTTTCTCATC TTGCCTACCAGAATTTACATTGAAGATATCTAGC