Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0614400-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:23844616:23848520:1 gene:Os11g0614400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Patatin-related phospholipase A II theta description:Similar to Patatin-like protein 1. (Os11t0614400-01)
Sequence

ATGGCGAGCAATGGCGAGGCGACGACGGGGAGCGAGACGGCGGCGCCGGCGCCGGTGCCG
GAGCCGACCCCGCCGCCGTGCCAGGGGAGGCTCATCACCGTGCTGAGCATCGACGGCGGC
GGCATCCGCGGCCTCATCCCGGCCACCATCCTCGCCTGCCTCGAGGCCAAGCTCCAGGAG
CTGGACGGGCCGGAGGCGAGGATCGCGGACTACTTCGACGTGATCGCCGGGACGAGCACC
GGGGCGCTGATCACGTCCATGCTGGCGGCGCCGGACGACGACCGGCGGCCGCTCTTCGCC
GCCGGCGACCTCACCAACTTCTACCTCGAGAACGGGCCCAAGATCTTCCCGCAGCGGAGG
GTTGGGTTCTTGACACCAGTGGCAAACCTGATCGGCGTGGTGAGGGGGCCCAAGTACGAT
GGCTCGTTCTTGCATGACAAGATCAAGAGCCTTACGCATGACGTTACCATCTCAAACACG
GTCACCAACATCGTTGTACCGGCTTTCGATGTCAAATACTTACAACCCATCATCTTTTCC
ACCTATGAGGCCAAGAATGAGCCCCTCAAGAATGCCCACCTCTCCGACATCTGTATCAGC
ACGTCAGCAGCGCCGACATACTTCCCCGCGCACTTCTTCAAGACCACCGACGTCTCCTCC
GGCAAGTCTCGGGAGTTCCACCTCATCGATGGCGGTGTCGCTGCAAACAACCCGACAATG
GTAGCCATGTCTATGATCAGCAAGGAAGTGTTGCGTGAGAACCAGGACTTTAAATTGGGT
AAGCCAGCAGATTACAAGCACTACCTGGTGATCTCAATCGGGACAGGGACGGCGAAGATG
GCGGAGAAGTACACCGCGCCGGCATGCGCCAAATGGGGTGTGCTCCGGTGGCTCTATGAC
GGCGGCTTCACCCCACTCATCGACATCTTCACTCATGCTAGTGCTGACATGGTCGACATC
CACGCGTCCGTTCTCTTCCAGTCTCTCTGCTGCGAGAAGAGCTACCTCCGTATTCAGGAC
GATTCGCTGGAGGGGCACACGTCGTCGGTGGACATCGCGACGAAGGAGAACATGGAGGCA
CTGATCAAGATCGGCAAGGACCTTCTGACTAAGCGAGTGGCGAGGGTGAACATCGACACC
GGAGTATACGAGCCCGTTGATGGAGAGGGCACCAACGAGGAGGCACTCGCTCGCTTTGCC
AAGAAGCTCTCAGAGGAGAGAAGGCTACGCAGAAACAACCTCAGTTCCTCTTGA

Peptide Sequence

PEP ID

Os11t0614400-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:23844616:23848520:1 gene:Os11g0614400 transcript:Os11t0614400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Patatin-related phospholipase A II theta description:Similar to Patatin-like protein 1. (Os11t0614400-01)
Sequence

MASNGEATTGSETAAPAPVPEPTPPPCQGRLITVLSIDGGGIRGLIPATILACLEAKLQE
LDGPEARIADYFDVIAGTSTGALITSMLAAPDDDRRPLFAAGDLTNFYLENGPKIFPQRR
VGFLTPVANLIGVVRGPKYDGSFLHDKIKSLTHDVTISNTVTNIVVPAFDVKYLQPIIFS
TYEAKNEPLKNAHLSDICISTSAAPTYFPAHFFKTTDVSSGKSREFHLIDGGVAANNPTM
VAMSMISKEVLRENQDFKLGKPADYKHYLVISIGTGTAKMAEKYTAPACAKWGVLRWLYD
GGFTPLIDIFTHASADMVDIHASVLFQSLCCEKSYLRIQDDSLEGHTSSVDIATKENMEA
LIKIGKDLLTKRVARVNIDTGVYEPVDGEGTNEEALARFAKKLSEERRLRRNNLSSS

Transcript Sequence

Transcript ID

Os11t0614400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:23844616:23848520:1 gene:Os11g0614400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Patatin-related phospholipase A II theta description:Similar to Patatin-like protein 1. (Os11t0614400-01)
Sequence

AGAAAGCACAAGATCCGAGGAGCAGATCGACCAAAAGTTTCTGATCCCCTCTTCTTCTCG
CTTGCTTCTCTCCTACTCGATCAATCTCGCTAGAGCTTCTTGCTTGCTTTGATCTCTCGA
GCCTCTAGCCTAGCTTAGCTAGCTAAGCTAGCTACTCATCAGTGTCCTAAGTAGAGTTGC
TAGCTAGCTAAGCATGGCGAGCAATGGCGAGGCGACGACGGGGAGCGAGACGGCGGCGCC
GGCGCCGGTGCCGGAGCCGACCCCGCCGCCGTGCCAGGGGAGGCTCATCACCGTGCTGAG
CATCGACGGCGGCGGCATCCGCGGCCTCATCCCGGCCACCATCCTCGCCTGCCTCGAGGC
CAAGCTCCAGGAGCTGGACGGGCCGGAGGCGAGGATCGCGGACTACTTCGACGTGATCGC
CGGGACGAGCACCGGGGCGCTGATCACGTCCATGCTGGCGGCGCCGGACGACGACCGGCG
GCCGCTCTTCGCCGCCGGCGACCTCACCAACTTCTACCTCGAGAACGGGCCCAAGATCTT
CCCGCAGCGGAGGGTTGGGTTCTTGACACCAGTGGCAAACCTGATCGGCGTGGTGAGGGG
GCCCAAGTACGATGGCTCGTTCTTGCATGACAAGATCAAGAGCCTTACGCATGACGTTAC
CATCTCAAACACGGTCACCAACATCGTTGTACCGGCTTTCGATGTCAAATACTTACAACC
CATCATCTTTTCCACCTATGAGGCCAAGAATGAGCCCCTCAAGAATGCCCACCTCTCCGA
CATCTGTATCAGCACGTCAGCAGCGCCGACATACTTCCCCGCGCACTTCTTCAAGACCAC
CGACGTCTCCTCCGGCAAGTCTCGGGAGTTCCACCTCATCGATGGCGGTGTCGCTGCAAA
CAACCCGACAATGGTAGCCATGTCTATGATCAGCAAGGAAGTGTTGCGTGAGAACCAGGA
CTTTAAATTGGGTAAGCCAGCAGATTACAAGCACTACCTGGTGATCTCAATCGGGACAGG
GACGGCGAAGATGGCGGAGAAGTACACCGCGCCGGCATGCGCCAAATGGGGTGTGCTCCG
GTGGCTCTATGACGGCGGCTTCACCCCACTCATCGACATCTTCACTCATGCTAGTGCTGA
CATGGTCGACATCCACGCGTCCGTTCTCTTCCAGTCTCTCTGCTGCGAGAAGAGCTACCT
CCGTATTCAGGACGATTCGCTGGAGGGGCACACGTCGTCGGTGGACATCGCGACGAAGGA
GAACATGGAGGCACTGATCAAGATCGGCAAGGACCTTCTGACTAAGCGAGTGGCGAGGGT
GAACATCGACACCGGAGTATACGAGCCCGTTGATGGAGAGGGCACCAACGAGGAGGCACT
CGCTCGCTTTGCCAAGAAGCTCTCAGAGGAGAGAAGGCTACGCAGAAACAACCTCAGTTC
CTCTTGAGCTGAGCTAAAGCTAAGTTAGCTAGCTAGCTCAGTTCTAGCTAAGCTAAGCTA
AGATGTAAAATTAAGTAATACAGCCTGTGATGTAGTAAGTGTGATGTGGGTGAGGTATTA
TGCATATTGTAATAATGTTGGTTTGGTTTTCAATAATTAATCAGCATGTGTTTATTTG