Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0607100-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:23427261:23429925:1 gene:Os11g0607100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0607100-01)
Sequence

ATGCTTGCTCGCCGTTGCCATGGCCTCCTCCTCCGCCGCCGCCGCCGCCTTCTCCCCAAC
CTCCCACCACTCTCCACCGCCGCTATCTCCACCCCGTCTCCGCCTCCGCCTCCGGATGCT
ACCCTCGATGGTGCCGCGCCCGGCGACCCCGGCGCGCTCGCCCCCGACGACGCCATCGCG
TCCCTCCCCACCGTGGCGGACTCCGCGGGCTCCGCGGCGGCGCTGGCGCTGTTCCGCCGC
CTCGCGTCGCGCCCGGACCTGCGCCGCCTCATGCGGCTCTACGTCACCGCGGCCACCGCC
TTCGTCGCGAGGGGGAGCCTCCCGATGGCGCACGAGGTCATGCGGGGGATGGTGGCCGCC
TTCGGCGAGGCCGGGAGGCTCCCCGAGGCCGCCGACATGGTCCTCGAGATGCGCAGCCAC
GGGCTCCCGCTCTGCGTCGAGACGGCGAACTGGGTGCTCAGGGTCGGGCTGGAGACCGGG
AGCTTCGTGTACGCGCGCAAGGTGTTCGACGGAATGACGAGGGCCGGTGTGTGCCCCGAT
GAGCGCAGCTTCCGGGCGCTGGTCGTGGTGTGCTGCCGGGAGGGAAAGGTGGAGGAGGTT
GATGCCTTGCTGGCGGCAATGTGGCGTTATGGGTTCTCGCTGGATAACGCGACGTGCACG
GTGGTCGTGCGGTCGCTCTGTGAGAAGGGACGGTTCAAGGATGTGTCTGAGTTCTTCAGG
AGGATGTTGGAGACGGGCACGCCACCGAACGTGGTGAATTACACTGCATGGATTGATGGG
CTGTGCAAGAGACGCTACGTGAAGCAAGCCTTCCATGTGCTGGAGGAGATGGTTGGAAGA
GGGTTGAAGCCTAATGTGTACACGCACACAACGTTGATTGATGGTCTCTGCAAGATTGGG
TGGACAGAGCGGGCGTTCCGGCTTTTCTTGAAGCTCATCAAGAGTAGCTCGTACAAGCCA
AATGTCCACACGTACACTGTAATGATTGGAGGGTATTGCAGGGAGGGCAAACTTGCTCGT
GCTGAGATGCTATTGGTGAGGATGGTTGAGCAGGGGTTGAAACCAAACACAAATACATAC
ACTACGCTTATTGGTGGGCATTGCAAGGGGGGCAGTTTTGATCGTGCATTTGAACTAATG
AATAAGATGAAGCAAGAAGGCTTCCTACCTAATATTTACACATACAATGCTGTTATTGAT
GGCTTCTGCAAGAAAGGAAAGATTCAAGAGGCTTACAAGGTGCTCCGAATGGCCACTAGT
CAGGGGCTCAAGTTTGATAAGATAACATATACTATACTGATAACTGAGCACTGCAAACAA
GGTCACATAACATATGCTCTAGATTTGTTCGATCGGATGGTGGAAAATGGTTGCTGTCCT
GATATAGAAGCATACACTAGCCTCATTTCTACATATTGTCAGCAGAGACAAATGGAAGAA
AGTCAGAAATTTTTTGACAAATGTCTTATGATAGGACTACTGCCAACCAAACAAACGTAT
ACATCAATGATTGCAGGGTACTGCAAAGTGGGAAGATCAACCTTGGCTTTGAGGGTCTTT
GAAAGGATGGTTCAAAATGGATGTTTTGCGGACTCTATAACTTATGGTGCTCTAATAAGT
GGTCTCTGCAAAGAATCGAGGCTAGAGGAAGCAAAGGCTTTATACGAAGGCATGCTTGAT
AAACGTTTGGTGCCATGTGAAGTAACTCGTGTCACTTTAACTTTTGAATATTGCAGGAGG
GAGAAAACAAGCATTGCTGTATCAGTCTTGGATAGATTGGACAAACGGCAGCAGGTTCAT
ACAGTAGATGTAGTAGTTAGAAAGCTCAGTGCCTTGGGAGATGTGGATGCTGCCAGTCTT
TTTCTTAAAAAAGTTTTGGACGAGGATTATGCTGTTGACCATGCAACTTATACTGGCTTC
ATCAATTCTTGTTATGAAAATAATAGATATGCCCTAGCTTCTGAAATGTCTGAAAAATTC
TCAAAGAAAATATCTAGCTTTAAAGAAAAAAGATGA

Peptide Sequence

PEP ID

Os11t0607100-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:23427261:23429925:1 gene:Os11g0607100 transcript:Os11t0607100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0607100-01)
Sequence

MLARRCHGLLLRRRRRLLPNLPPLSTAAISTPSPPPPPDATLDGAAPGDPGALAPDDAIA
SLPTVADSAGSAAALALFRRLASRPDLRRLMRLYVTAATAFVARGSLPMAHEVMRGMVAA
FGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPD
ERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFR
RMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIG
WTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTY
TTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATS
QGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEE
SQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALIS
GLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQQVH
TVDVVVRKLSALGDVDAASLFLKKVLDEDYAVDHATYTGFINSCYENNRYALASEMSEKF
SKKISSFKEKR

Transcript Sequence

Transcript ID

Os11t0607100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:23427261:23429925:1 gene:Os11g0607100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0607100-01)
Sequence

AGCATTCTGCGTGGAGAGAGAGATGCTTGCTCGCCGTTGCCATGGCCTCCTCCTCCGCCG
CCGCCGCCGCCTTCTCCCCAACCTCCCACCACTCTCCACCGCCGCTATCTCCACCCCGTC
TCCGCCTCCGCCTCCGGATGCTACCCTCGATGGTGCCGCGCCCGGCGACCCCGGCGCGCT
CGCCCCCGACGACGCCATCGCGTCCCTCCCCACCGTGGCGGACTCCGCGGGCTCCGCGGC
GGCGCTGGCGCTGTTCCGCCGCCTCGCGTCGCGCCCGGACCTGCGCCGCCTCATGCGGCT
CTACGTCACCGCGGCCACCGCCTTCGTCGCGAGGGGGAGCCTCCCGATGGCGCACGAGGT
CATGCGGGGGATGGTGGCCGCCTTCGGCGAGGCCGGGAGGCTCCCCGAGGCCGCCGACAT
GGTCCTCGAGATGCGCAGCCACGGGCTCCCGCTCTGCGTCGAGACGGCGAACTGGGTGCT
CAGGGTCGGGCTGGAGACCGGGAGCTTCGTGTACGCGCGCAAGGTGTTCGACGGAATGAC
GAGGGCCGGTGTGTGCCCCGATGAGCGCAGCTTCCGGGCGCTGGTCGTGGTGTGCTGCCG
GGAGGGAAAGGTGGAGGAGGTTGATGCCTTGCTGGCGGCAATGTGGCGTTATGGGTTCTC
GCTGGATAACGCGACGTGCACGGTGGTCGTGCGGTCGCTCTGTGAGAAGGGACGGTTCAA
GGATGTGTCTGAGTTCTTCAGGAGGATGTTGGAGACGGGCACGCCACCGAACGTGGTGAA
TTACACTGCATGGATTGATGGGCTGTGCAAGAGACGCTACGTGAAGCAAGCCTTCCATGT
GCTGGAGGAGATGGTTGGAAGAGGGTTGAAGCCTAATGTGTACACGCACACAACGTTGAT
TGATGGTCTCTGCAAGATTGGGTGGACAGAGCGGGCGTTCCGGCTTTTCTTGAAGCTCAT
CAAGAGTAGCTCGTACAAGCCAAATGTCCACACGTACACTGTAATGATTGGAGGGTATTG
CAGGGAGGGCAAACTTGCTCGTGCTGAGATGCTATTGGTGAGGATGGTTGAGCAGGGGTT
GAAACCAAACACAAATACATACACTACGCTTATTGGTGGGCATTGCAAGGGGGGCAGTTT
TGATCGTGCATTTGAACTAATGAATAAGATGAAGCAAGAAGGCTTCCTACCTAATATTTA
CACATACAATGCTGTTATTGATGGCTTCTGCAAGAAAGGAAAGATTCAAGAGGCTTACAA
GGTGCTCCGAATGGCCACTAGTCAGGGGCTCAAGTTTGATAAGATAACATATACTATACT
GATAACTGAGCACTGCAAACAAGGTCACATAACATATGCTCTAGATTTGTTCGATCGGAT
GGTGGAAAATGGTTGCTGTCCTGATATAGAAGCATACACTAGCCTCATTTCTACATATTG
TCAGCAGAGACAAATGGAAGAAAGTCAGAAATTTTTTGACAAATGTCTTATGATAGGACT
ACTGCCAACCAAACAAACGTATACATCAATGATTGCAGGGTACTGCAAAGTGGGAAGATC
AACCTTGGCTTTGAGGGTCTTTGAAAGGATGGTTCAAAATGGATGTTTTGCGGACTCTAT
AACTTATGGTGCTCTAATAAGTGGTCTCTGCAAAGAATCGAGGCTAGAGGAAGCAAAGGC
TTTATACGAAGGCATGCTTGATAAACGTTTGGTGCCATGTGAAGTAACTCGTGTCACTTT
AACTTTTGAATATTGCAGGAGGGAGAAAACAAGCATTGCTGTATCAGTCTTGGATAGATT
GGACAAACGGCAGCAGGTTCATACAGTAGATGTAGTAGTTAGAAAGCTCAGTGCCTTGGG
AGATGTGGATGCTGCCAGTCTTTTTCTTAAAAAAGTTTTGGACGAGGATTATGCTGTTGA
CCATGCAACTTATACTGGCTTCATCAATTCTTGTTATGAAAATAATAGATATGCCCTAGC
TTCTGAAATGTCTGAAAAATTCTCAAAGAAAATATCTAGCTTTAAAGAAAAAAGATGATT
TAGCAACAGCCATTGCTTGATCAGAAAGGGTGGTGCATTGCTTCTACTGATACAGACAAG
AAATTCTACATTCAAGGTATAGACCTGACTTTCTCAAATGGAGTGGGGGAGAACTTGAAG
ATAGTAATGGCATCTTCTTTGCATAAAATTCTGTGAGAACTGAGAAGAAACAAGGTCATT
CGTTGATTTGATGGAGAAATGAAGAACAAGTCTTTCTTGAATACTTGGGAGATAGTAGTC
ACTAACAAAATCCATCTGTGCATTGTATAATGAAGGTTATTTCATTAACCATTATACTGG
TTCTGAACAATTAGTTCAATTTTGTACTTAAGCAACAAGGATGTTGTTTCATAGAAAAGT
TATCCATTATTCCTACC