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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0604600-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:23291111:23294409:1 gene:Os11g0604600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11t0604600-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11t0604600-02)
Sequence

ATGGGGGAGCAGCCGGCGCGGGGGGCGGCGTCGTCGGCGTCGGAGTCGTCGCCGCTGATC
CCACCGCCGTCGGAGATCGACATCGAGGCCGGGGCCGGGGACCAGTTCCAGTGCCGGATC
TGCCTCGAGACCGACGGGAGGGATTTCATCGCGCCGTGCAAGTGCAAGGGGACGTCCAAG
TACGTCCACCGCGACTGCCTCGACCACTGGAGAGCCGTGAAGGAAGGATTTGCCTTTTCG
CATTGCACCACTTGTAAAGCTCCTTACTATTTGAGGGTTCATGTTCACACTGATAGGAAA
TGGCGAACATTGAAATTTCGTTTCTTCGTTACTAGAGATATATTATTCATCTTTGCTCTA
GTGCAGTTTGTCATATCTGCATTAGCGTATTTGGTGCATTTTATTGATGGATTACAGAAT
TACTGGTTGAGGACAGCCTGGGCATTTGACAATGAAGTTAGTTTTTATTACATATGTGGG
GCATTGCTATTTTTTGCTTTGCTTGGGTTATCAGGATGCTTCATAACTTGTTATGACCGA
AGAGTACGGAATGACCTGGCACAGCCTTGTCGAGAGTTATGTCTTTGTTGCTGCCAACCA
GGGATGTGTGCAGATTGCCATCTACCTGGTACGCTTTGCATGTGGACAGATTGCACTACA
TGCTTTGAGGGCTGTGCAACGACAGCTGGAGAGTGTGGTGGTTGCTTGGGTGGTGCTGGA
GAAGCAGGGTTACCATTGCTCTTTATCATGGGAGTAATCGTGCTTGGACTATTCACAGTT
ATCGGCATTTTCTACAGCGTCTTGGTAGCAACCATGGTGGGTCAGCGGATCTGGCAGAGA
CACTACCATATTCTTGCAAAACGAATGTTAACTAAGGAATATGTTGTGGAAGATGTCGAT
GGCGAGCGCGCGGATTGGTGTCCGCCCCCTCTCCCTTCGGAGCATGTCCAACAGCTGAAG
TCTCTGGGGCTTCTATAA

Peptide Sequence

PEP ID

Os11t0604600-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:23291111:23294409:1 gene:Os11g0604600 transcript:Os11t0604600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11t0604600-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11t0604600-02)
Sequence

MGEQPARGAASSASESSPLIPPPSEIDIEAGAGDQFQCRICLETDGRDFIAPCKCKGTSK
YVHRDCLDHWRAVKEGFAFSHCTTCKAPYYLRVHVHTDRKWRTLKFRFFVTRDILFIFAL
VQFVISALAYLVHFIDGLQNYWLRTAWAFDNEVSFYYICGALLFFALLGLSGCFITCYDR
RVRNDLAQPCRELCLCCCQPGMCADCHLPGTLCMWTDCTTCFEGCATTAGECGGCLGGAG
EAGLPLLFIMGVIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVD
GERADWCPPPLPSEHVQQLKSLGLL

Transcript Sequence

Transcript ID

Os11t0604600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:23291111:23294409:1 gene:Os11g0604600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11t0604600-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11t0604600-02)
Sequence

GTCGTCGGCTTCGATTCGATCGATCGAGGCGAGGAGGAGGAGGAGCTAGGGTTTCGGATG
GGAGGAGGAGGAGGGTTGTAGAAGCGCGGGGGCAGGCTGCGGTGGATCGTCGATGGGGGA
GCAGCCGGCGCGGGGGGCGGCGTCGTCGGCGTCGGAGTCGTCGCCGCTGATCCCACCGCC
GTCGGAGATCGACATCGAGGCCGGGGCCGGGGACCAGTTCCAGTGCCGGATCTGCCTCGA
GACCGACGGGAGGGATTTCATCGCGCCGTGCAAGTGCAAGGGGACGTCCAAGTACGTCCA
CCGCGACTGCCTCGACCACTGGAGAGCCGTGAAGGAAGGATTTGCCTTTTCGCATTGCAC
CACTTGTAAAGCTCCTTACTATTTGAGGGTTCATGTTCACACTGATAGGAAATGGCGAAC
ATTGAAATTTCGTTTCTTCGTTACTAGAGATATATTATTCATCTTTGCTCTAGTGCAGTT
TGTCATATCTGCATTAGCGTATTTGGTGCATTTTATTGATGGATTACAGAATTACTGGTT
GAGGACAGCCTGGGCATTTGACAATGAAGTTAGTTTTTATTACATATGTGGGGCATTGCT
ATTTTTTGCTTTGCTTGGGTTATCAGGATGCTTCATAACTTGTTATGACCGAAGAGTACG
GAATGACCTGGCACAGCCTTGTCGAGAGTTATGTCTTTGTTGCTGCCAACCAGGGATGTG
TGCAGATTGCCATCTACCTGGTACGCTTTGCATGTGGACAGATTGCACTACATGCTTTGA
GGGCTGTGCAACGACAGCTGGAGAGTGTGGTGGTTGCTTGGGTGGTGCTGGAGAAGCAGG
GTTACCATTGCTCTTTATCATGGGAGTAATCGTGCTTGGACTATTCACAGTTATCGGCAT
TTTCTACAGCGTCTTGGTAGCAACCATGGTGGGTCAGCGGATCTGGCAGAGACACTACCA
TATTCTTGCAAAACGAATGTTAACTAAGGAATATGTTGTGGAAGATGTCGATGGCGAGCG
CGCGGATTGGTGTCCGCCCCCTCTCCCTTCGGAGCATGTCCAACAGCTGAAGTCTCTGGG
GCTTCTATAATCTGTAGCCCATGATTATACCAATGATGACCTTAATTTAGGACTTGCGGC
ACTATCCAGCTGTACAGGAGATGATACAAATTAAGCGGTGAAGCAGGCGTTTCGGTTTTT
AAGCAGCCAAATGCACAACAATATCGTTTGTCTTTTTTTGTACATTGTAACAAGGGAATA
CCTATCTGAAAAATGACA