Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0603200-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:23230112:23233926:1 gene:Os11g0603200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABC TRANSPORTER F FAMILY MEMBER 6 description:Similar to ABCF-type protein. (Os11t0603200-01);Similar to ABCF-type protein. (Os11t0603200-02)
Sequence	ATGGCGGCGCCACCCATGGAGCTCCTCTCCTCCAAGCTCCTCCGCTCCTCCCTCCGCCTC CCCCCCTCCCCTTCCCTCCCCTCCCCCTCCTCCCGCCGCCTCCGCCGCCACGCCCCCATC CACTGCCGCCTCACCTCCTCCACCACCACCACCACCACCCAAGAAGAGCAGTCCGCCGCC GACGACCTCTCCTCCCTCCTCTCCACCTCCACCTCCGACGAGCCCTCCTCCTCGAAGAAG AAGCGGTCGAATAGCAGCAGCGGCGCGTCGAGCATCCCGACGGGGGTGCGGCTGGAGGGC ATCGCCAAGTCCTACAAGGGGGTGACCGTGCTCAGGGACGTTTCTTGGGAGGTGCAGCGC GGCGAGAAGGTCGGACTCGTCGGCGTCAACGGCGCCGGCAAGACGACCCAGCTCCGCATC ATCGCCGGCCTCGAGGACCCCGACGCCGGCGCCGTCGTCAAGGCCAAGGACAACATGAGG ATCGCCTTCCTCAGCCAGGAGTTCGAGGTGTGCGCGTCGCGCACCGTCAGGGAGGAGTTC CTCGCCGCGTTCGAGGAGGAGATGGAGGTGAGGTCCCGCCTGGAGAAGGTGCAGGCCGCG CTGGAGGGCGCCACCGAGGACATGGACCTCATGGGGCGCCTCCTCGACGAGCTCGACCTG CTGCAGCGGCGGTCGCAGGACGTCGACCTCGGGATGGTCGAGGTCAAGATCCAGAAGCTC ATGCCCGAGCTCGGGTTCGCTCCCGAGGACGCCGACCGCCTCGTCGCCTCCTTCAGTGGT GGGTGGCAGATGAGGATGTCCCTCGGCAAGATTCTTCTTCAGGATCCCGATTTGCTGCTG CTCGATGAGCCGACCAATCACGTCGATTTGGACACCATTGAGTGGCTGGAGAGTTACCTC AAGACGCAGGAAGTGCCGATGGTCATCATTTCTCATGACAGGGCTTTCCTGGATCAGTTG TGTACCAAGATAGTGGAAACTGAATTCGGCGTGTCCAAAACGTACAAGGGAAACTATTCG GAATACGTTTTGGCGAAGGCGATTTGGGTGGAGACTCAATATGCCGCATGGGAGAAGCAG CAGAAGGAGATTGAGCAGACAAAGGAACTGATAAACAGACTTGGGGCTGGAGTTAACGCA GGGCGTGCATCGAGTGAGCAGAAGAAATTGGAAAAGCTTGAAAAGGAAGGATTGATTGAG AAGCCTTTCCAAAGGAAGCAGTTGAAGATCAGATTTCCAGAGCGTGGGCAAAGCGGTAGA ACTGTATTGACAATAAGGAATCTCGAATTTGGATTTGGGGAAGAGAAATTGTTCAATAAT GCAAATCTAATAGTTGAGAGAGGTGAAAAGATAGCCATAATTGGCCCCAATGGATGTGGG AAAAGCACTTTACTTAAGCTTATTTTGGGGATGGAGAAGACACAAGGAGGCGAAGTACTT CTTGGGGAGCATAATGTATTGCCTAATTATTTCGAGCAAAATCAGGCTGAAGCACTTGAT TTGGAGAAAACTGTGCTGGATACTGTAGCAGAAGCAGCAGAGGATTGGAAAATTGATGAT ATCAAAGGTCTCCTTGGTCGTTGCAATTTTAGGGATGATATGTTGGATAGAAAGGTTCAA TTCTTAAGTGGTGGAGAGAAGGCGAGGCTTGCCTTCTGCAAGTTCTTGGTGACTCCATCT ACTTTATTGATATTGGATGAACCAACAAATCACCTTGATATTCCATCGAAAGAAATGCTT GAGGAGGCAATTTCAGAATACACAGGCACTGTTATAACAGTTTCTCATGACCGGTATTTC GTAAAGCAAATTGTTAACAGAGTTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAA GGAGATTACAATTATTACCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGT GAGGAAGAGCTCGAGGAGAAAGCCCCCAAAGTAAAGGCCAAGTCAAAAATGTCAAAGGCA GAGAAAATTGCCAGAAAGAAGCAGAAGATGCAGGCATTCCAGCAAAGCAAGCAAAAATCG AAATCGCTGAAAAACGCGAAGAGGTGGAAGTGA

Peptide Sequence

PEP ID	Os11t0603200-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:23230112:23233926:1 gene:Os11g0603200 transcript:Os11t0603200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABC TRANSPORTER F FAMILY MEMBER 6 description:Similar to ABCF-type protein. (Os11t0603200-01);Similar to ABCF-type protein. (Os11t0603200-02)
Sequence	MAAPPMELLSSKLLRSSLRLPPSPSLPSPSSRRLRRHAPIHCRLTSSTTTTTTQEEQSAA DDLSSLLSTSTSDEPSSSKKKRSNSSSGASSIPTGVRLEGIAKSYKGVTVLRDVSWEVQR GEKVGLVGVNGAGKTTQLRIIAGLEDPDAGAVVKAKDNMRIAFLSQEFEVCASRTVREEF LAAFEEEMEVRSRLEKVQAALEGATEDMDLMGRLLDELDLLQRRSQDVDLGMVEVKIQKL MPELGFAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHVDLDTIEWLESYL KTQEVPMVIISHDRAFLDQLCTKIVETEFGVSKTYKGNYSEYVLAKAIWVETQYAAWEKQ QKEIEQTKELINRLGAGVNAGRASSEQKKLEKLEKEGLIEKPFQRKQLKIRFPERGQSGR TVLTIRNLEFGFGEEKLFNNANLIVERGEKIAIIGPNGCGKSTLLKLILGMEKTQGGEVL LGEHNVLPNYFEQNQAEALDLEKTVLDTVAEAAEDWKIDDIKGLLGRCNFRDDMLDRKVQ FLSGGEKARLAFCKFLVTPSTLLILDEPTNHLDIPSKEMLEEAISEYTGTVITVSHDRYF VKQIVNRVIEVKDQTIQDYQGDYNYYLERNLEARERELAREEELEEKAPKVKAKSKMSKA EKIARKKQKMQAFQQSKQKSKSLKNAKRWK

Transcript Sequence

Transcript ID	Os11t0603200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:23230112:23233926:1 gene:Os11g0603200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABC TRANSPORTER F FAMILY MEMBER 6 description:Similar to ABCF-type protein. (Os11t0603200-01);Similar to ABCF-type protein. (Os11t0603200-02)
Sequence	CCCTCCCATTTGGGCTTTTATTTTTGTGTGGTGTGGCCACTCCCTCCTCCACCCAAACCC CTCTTCCCCCAACCCAACCTCTCGCGCGCGAGGAGCTCCATCCATGGCGGCGCCACCCAT GGAGCTCCTCTCCTCCAAGCTCCTCCGCTCCTCCCTCCGCCTCCCCCCCTCCCCTTCCCT CCCCTCCCCCTCCTCCCGCCGCCTCCGCCGCCACGCCCCCATCCACTGCCGCCTCACCTC CTCCACCACCACCACCACCACCCAAGAAGAGCAGTCCGCCGCCGACGACCTCTCCTCCCT CCTCTCCACCTCCACCTCCGACGAGCCCTCCTCCTCGAAGAAGAAGCGGTCGAATAGCAG CAGCGGCGCGTCGAGCATCCCGACGGGGGTGCGGCTGGAGGGCATCGCCAAGTCCTACAA GGGGGTGACCGTGCTCAGGGACGTTTCTTGGGAGGTGCAGCGCGGCGAGAAGGTCGGACT CGTCGGCGTCAACGGCGCCGGCAAGACGACCCAGCTCCGCATCATCGCCGGCCTCGAGGA CCCCGACGCCGGCGCCGTCGTCAAGGCCAAGGACAACATGAGGATCGCCTTCCTCAGCCA GGAGTTCGAGGTGTGCGCGTCGCGCACCGTCAGGGAGGAGTTCCTCGCCGCGTTCGAGGA GGAGATGGAGGTGAGGTCCCGCCTGGAGAAGGTGCAGGCCGCGCTGGAGGGCGCCACCGA GGACATGGACCTCATGGGGCGCCTCCTCGACGAGCTCGACCTGCTGCAGCGGCGGTCGCA GGACGTCGACCTCGGGATGGTCGAGGTCAAGATCCAGAAGCTCATGCCCGAGCTCGGGTT CGCTCCCGAGGACGCCGACCGCCTCGTCGCCTCCTTCAGTGGTGGGTGGCAGATGAGGAT GTCCCTCGGCAAGATTCTTCTTCAGGATCCCGATTTGCTGCTGCTCGATGAGCCGACCAA TCACGTCGATTTGGACACCATTGAGTGGCTGGAGAGTTACCTCAAGACGCAGGAAGTGCC GATGGTCATCATTTCTCATGACAGGGCTTTCCTGGATCAGTTGTGTACCAAGATAGTGGA AACTGAATTCGGCGTGTCCAAAACGTACAAGGGAAACTATTCGGAATACGTTTTGGCGAA GGCGATTTGGGTGGAGACTCAATATGCCGCATGGGAGAAGCAGCAGAAGGAGATTGAGCA GACAAAGGAACTGATAAACAGACTTGGGGCTGGAGTTAACGCAGGGCGTGCATCGAGTGA GCAGAAGAAATTGGAAAAGCTTGAAAAGGAAGGATTGATTGAGAAGCCTTTCCAAAGGAA GCAGTTGAAGATCAGATTTCCAGAGCGTGGGCAAAGCGGTAGAACTGTATTGACAATAAG GAATCTCGAATTTGGATTTGGGGAAGAGAAATTGTTCAATAATGCAAATCTAATAGTTGA GAGAGGTGAAAAGATAGCCATAATTGGCCCCAATGGATGTGGGAAAAGCACTTTACTTAA GCTTATTTTGGGGATGGAGAAGACACAAGGAGGCGAAGTACTTCTTGGGGAGCATAATGT ATTGCCTAATTATTTCGAGCAAAATCAGGCTGAAGCACTTGATTTGGAGAAAACTGTGCT GGATACTGTAGCAGAAGCAGCAGAGGATTGGAAAATTGATGATATCAAAGGTCTCCTTGG TCGTTGCAATTTTAGGGATGATATGTTGGATAGAAAGGTTCAATTCTTAAGTGGTGGAGA GAAGGCGAGGCTTGCCTTCTGCAAGTTCTTGGTGACTCCATCTACTTTATTGATATTGGA TGAACCAACAAATCACCTTGATATTCCATCGAAAGAAATGCTTGAGGAGGCAATTTCAGA ATACACAGGCACTGTTATAACAGTTTCTCATGACCGGTATTTCGTAAAGCAAATTGTTAA CAGAGTTATTGAAGTGAAAGATCAGACTATTCAGGACTATCAAGGAGATTACAATTATTA CCTTGAAAGGAATCTTGAGGCCAGAGAGAGGGAACTTGCACGTGAGGAAGAGCTCGAGGA GAAAGCCCCCAAAGTAAAGGCCAAGTCAAAAATGTCAAAGGCAGAGAAAATTGCCAGAAA GAAGCAGAAGATGCAGGCATTCCAGCAAAGCAAGCAAAAATCGAAATCGCTGAAAAACGC GAAGAGGTGGAAGTGAGAATCCTGATTCATGGTATCATCCACGGTGCCATACACCTCATT TGCGACACCAGTGACAAGGCAGGCGCATGGCCTGCTGTAATGCTATTATACTCCATATAT CACTAGCAACTGGTGTACATACATCAGAAAGGAAGTAATCCTAGCAGTAGCATCATAGGA GGACCAAATGCTGTAACTAAAGCAGGAAATGATACATGACCTTGTACATAATGCAGGCAG TTTCTGATGGAGGCATGCTTTATTTTGTATCAAGTAGCAATACC